AT5G22580

Stress responsive A/B Barrel Domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0004083
Physical Location & Seq
Forward (+)
7502427 .. 7503463
1037 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G22580.1

Sequence Viewer

Length: 336 bp
ATGGCAACTTCAGGGTTTAAGCATTTGGTGGTTGTGAAGTTTAAGGAAGATACAAAGGTTGATGAGATCTTGAAGGGCTTGGAGAATCTTGTTTCTCAGATTGATACTGTCAAATCCTTTGAATGGGGAGAAGATAAAGAGAGTCACGATATGCTTAGACAAGGATTCACTCATGCATTTTCGATGACCTTTGAGAACAAAGATGGTTACGTCGCCTTCACAAGCCATCCTCTTCATGTTGAATTCTCAGCCGCTTTCACCGCCGTCATCGACAAGATCGTTCTCCTCGATTTCCCCGTCGCCGCTGTCAAATCTTCCGTTGTTGCAACACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dabb

Protein Analysis

111

Amino Acids

12.35

Weight (kDa)

5.42

Isoelectric Point (pI)

15.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dabb PF07876 7 - 99 8e-26 Stress responsive A/B Barrel Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 252, 261, 303
AcsI RAATTY 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 123
AgsI TTSAA 3 cut(s) 73, 122, 242
ApoI RAATTY 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 250
BaeI ACNNNNGTAYC 2 cut(s) 42, 75
BccI CCATC 2 cut(s) 197, 234
BceAI ACGGC 1 cut(s) 248
BglII AGATCT 1 cut(s) 66
BisI GCNGC 2 cut(s) 252, 303
BlsI GCNGC 2 cut(s) 253, 304
Bsc4I CCNNNNNNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMII CTCAG 2 cut(s) 110, 261
BseRI GAGGAG 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 123
Bsp143I GATC 2 cut(s) 66, 276
BspACI CCGC 3 cut(s) 252, 261, 303
BspCNI CTCAG 2 cut(s) 109, 260
BssMI GATC 2 cut(s) 66, 276
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 1 cut(s) 237
BstDEI CTNAG 3 cut(s) 96, 155, 247
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 2 cut(s) 69, 279
BstMBI GATC 2 cut(s) 66, 276
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BtsCI GGATG 1 cut(s) 226
CviAII CATG 3 cut(s) 173, 236, 333
CviJI RGCY 3 cut(s) 78, 225, 251
CviKI_1 RGCY 3 cut(s) 78, 225, 251
DdeI CTNAG 3 cut(s) 96, 155, 247
DpnI GATC 2 cut(s) 68, 278
DpnII GATC 2 cut(s) 66, 276
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
EcoRI GAATTC 1 cut(s) 242
EcoT22I ATGCAT 1 cut(s) 178
FaeI CATG 3 cut(s) 176, 239, 336
FaiI YATR 4 cut(s) 152, 174, 237, 334
FatI CATG 3 cut(s) 172, 235, 332
Fnu4HI GCNGC 2 cut(s) 252, 303
FokI GGATG 1 cut(s) 213
Fsp4HI GCNGC 2 cut(s) 252, 303
GluI GCNGC 2 cut(s) 252, 303
Hin1II CATG 3 cut(s) 176, 239, 336
HinfI GANTC 3 cut(s) 85, 142, 165
HphI GGTGA 1 cut(s) 250
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 2 cut(s) 70, 146
Hpy99I CGWCG 2 cut(s) 215, 302
HpyAV CCTTC 2 cut(s) 67, 226
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 2 cut(s) 176, 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 3 cut(s) 96, 155, 247
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 3 cut(s) 176, 239, 336
Kzo9I GATC 2 cut(s) 66, 276
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 2 cut(s) 143, 206
MalI GATC 2 cut(s) 68, 278
MboI GATC 2 cut(s) 66, 276
MboII GAAGA 4 cut(s) 59, 143, 224, 306
MflI RGATCY 1 cut(s) 66
MluCI AATT 1 cut(s) 242
MlyI GAGTC 1 cut(s) 151
MnlI CCTC 2 cut(s) 240, 296
Mph1103I ATGCAT 1 cut(s) 178
MseI TTAA 2 cut(s) 18, 42
MspA1I CMGCKG 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 260
NdeII GATC 2 cut(s) 66, 276
NlaIII CATG 3 cut(s) 176, 239, 336
NmuCI GTSAC 1 cut(s) 143
NsiI ATGCAT 1 cut(s) 178
PcsI WCGNNNNNNNCGW 3 cut(s) 276, 285, 294
PfeI GAWTC 2 cut(s) 85, 165
PkrI GCNGC 2 cut(s) 253, 304
PleI GAGTC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 150
PsuI RGATCY 1 cut(s) 66
SaqAI TTAA 2 cut(s) 18, 42
SatI GCNGC 2 cut(s) 252, 303
Sau3AI GATC 2 cut(s) 66, 276
SchI GAGTC 1 cut(s) 151
SetI ASST 3 cut(s) 60, 191, 213
Sse9I AATT 1 cut(s) 242
SsiI CCGC 3 cut(s) 252, 261, 303
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 1 cut(s) 213
TaqI TCGA 3 cut(s) 182, 270, 288
TasI AATT 1 cut(s) 242
TauI GCSGC 2 cut(s) 254, 305
TfiI GAWTC 2 cut(s) 85, 165
Tru1I TTAA 2 cut(s) 18, 42
Tru9I TTAA 2 cut(s) 18, 42
TseFI GTSAC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 224
TspGWI ACGGA 1 cut(s) 307
XapI RAATTY 1 cut(s) 242
Zsp2I ATGCAT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.