Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007341.1

Orthogroup ID

OG0004083

Physical Location & Seq

Genomic Coordinates Forward (+)

143477 .. 145713

Gene Structure 2237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007341.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgaggcgttcagccggaaggtaccgtgagagagtggtcgtcgagcatggtagcgatctgggcgccgaacgggagggattgagtgatcagacagggaaagtgatgggaggaggtggttattccacaggagtacgagggagatggatttgtagctggaattggagaggatctcggcggcaactggacagccttcccttcggagaccgtacgtactccgcctcgatgaccactctctcatggttccttccggctgaacgcctcgtctcgctcaacaacttggcggccccaatttactccgacgggtcgttgatcatcccagcaccagcaggttcttcgaccgatcttgaggaagaagcaggtgccgccaaacgtggtgctaccaaatcaaacctacggtttgcagagctcccgccacagcattttcagatctcgtatctgcagctttgcaattcgaaaatggcgacccagatgagcaagaagcgaaagttctttgttgatggtgttttcttcgccgagctcaacgagcttctaatgagggagctctccgaggacggctactccggcactgaggtcagggttactccggcactgaggtcagggttacgccgacacgcactgagagcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KH_2 Ribosomal_S3_C

Protein Analysis

208

Amino Acids

23.07

Weight (kDa)

9.68

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22580
fragaria_vesca	FvH4_3g29640
malus_domestica	MD03G1136000.v1.1 MD11G1158500.v1.1
prunus_persica	Prupe.6G120300_v2.0.a1
pyrus_communis	pycom03g09190
rosa_chinensis	RchiOBHm_Chr5g0055001
rosa_laevigata	RLG00000034955
rosa_multiflora	Rmu_co8073320.1_g000001 Rmu_sc0000502.1_g000018 Rmu_sc0000631.1_g000027 Rmu_sc0000894.1_g000005 Rmu_sc0001023.1_g000031 Rmu_sc0002590.1_g000009 Rmu_sc0002700.1_g000034 Rmu_sc0002831.1_g000015 Rmu_sc0003351.1_g000004 Rmu_sc0004354.1_g000003 Rmu_sc0007341.1_g000039 Rmu_sc0011695.1_g000003 Rmu_sc0018119.1_g000001 Rmu_ssc0000184.1_g000026 Rmu_ssc0000238.1_g000026
rosa_roxburghii	Rroxscaffold_1G00025510 Rroxscaffold_3G00240200 Rroxscaffold_4G00316460 Rroxscaffold_7G00186340
rosa_rugosa	Rorug05G0289800
rosa_samantha	Rh5AG359900 Rh5BG370900 Rh5CG393200 Rh5DG384700
rosa_wichuraiana	Rw5G033860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	347
Acc36I	ACCTGC	2 cut(s)	317, 347
Acc65I	GGTACC	1 cut(s)	21
AccB1I	GGYRCC	3 cut(s)	21, 62, 359
AciI	CCGC	5 cut(s)	175, 216, 281, 363, 410
AclWI	GGATC	1 cut(s)	175
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	4 cut(s)	23, 132, 208, 212
AluBI	AGCT	6 cut(s)	153, 406, 442, 517, 526, 541
AluI	AGCT	6 cut(s)	153, 406, 442, 517, 526, 541
Alw21I	GWGCWC	3 cut(s)	408, 519, 543
Alw26I	GTCTC	2 cut(s)	195, 268
AlwI	GGATC	1 cut(s)	175
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	1 cut(s)	439
Asp718I	GGTACC	1 cut(s)	21
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	283
AsuII	TTCGAA	1 cut(s)	452
BanI	GGYRCC	3 cut(s)	21, 62, 359
BanII	GRGCYC	3 cut(s)	408, 519, 543
Bbv12I	GWGCWC	3 cut(s)	408, 519, 543
BbvI	GCAGC	1 cut(s)	451
BccI	CCATC	3 cut(s)	97, 135, 491
BceAI	ACGGC	1 cut(s)	568
BcgI	CGANNNNNNTGC	2 cut(s)	315, 349
BclI	TGATCA	2 cut(s)	85, 309
BcoDI	GTCTC	2 cut(s)	195, 268
BfmI	CTRYAG	1 cut(s)	437
BfoI	RGCGCY	1 cut(s)	66
BfuAI	ACCTGC	2 cut(s)	317, 347
BglII	AGATCT	1 cut(s)	426
BisI	GCNGC	4 cut(s)	176, 282, 363, 440
BlsI	GCNGC	4 cut(s)	177, 283, 364, 441
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	5 cut(s)	23, 64, 242, 285, 361
BplI	GAGNNNNNCTC	2 cut(s)	154, 186
Bpu14I	TTCGAA	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	365
BsaAI	YACGTR	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	63
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	546
BsaXI	ACNNNNNCTCC	2 cut(s)	542, 572
Bse1I	ACTGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	546
BseGI	GGATG	1 cut(s)	312
BseMII	CTCAG	3 cut(s)	558, 581, 608
BseNI	ACTGG	1 cut(s)	186
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	451
BseYI	CCCAGC	1 cut(s)	316
Bsh1285I	CGRYCG	1 cut(s)	339
BshFI	GGCC	1 cut(s)	284
BshNI	GGYRCC	3 cut(s)	21, 62, 359
BsiEI	CGRYCG	1 cut(s)	339
BsiHKAI	GWGCWC	3 cut(s)	408, 519, 543
BsiSI	CCGG	4 cut(s)	15, 248, 561, 584
BsiWI	CGTACG	1 cut(s)	206
BsmAI	GTCTC	2 cut(s)	195, 268
BsmBI	CGTCTC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	284
Bso31I	GGTCTC	1 cut(s)	195
Bsp119I	TTCGAA	1 cut(s)	452
Bsp1286I	GDGCHC	3 cut(s)	408, 519, 543
Bsp143I	GATC	6 cut(s)	55, 85, 167, 309, 340, 426
BspACI	CCGC	5 cut(s)	175, 216, 281, 363, 410
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	3 cut(s)	559, 582, 609
BspLI	GGNNCC	5 cut(s)	23, 64, 242, 285, 361
BspMAI	CTGCAG	1 cut(s)	441
BspMI	ACCTGC	2 cut(s)	317, 347
BspPI	GGATC	1 cut(s)	175
BspT104I	TTCGAA	1 cut(s)	452
BspT107I	GGYRCC	3 cut(s)	21, 62, 359
BspTNI	GGTCTC	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	546
BssMI	GATC	6 cut(s)	55, 85, 167, 309, 340, 426
BssNI	GRCGYC	1 cut(s)	63
Bst4CI	ACNGT	3 cut(s)	26, 206, 396
BstACI	GRCGYC	1 cut(s)	63
BstBAI	YACGTR	1 cut(s)	210
BstBI	TTCGAA	1 cut(s)	452
BstDEI	CTNAG	3 cut(s)	567, 590, 617
BstF5I	GGATG	1 cut(s)	312
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	6 cut(s)	58, 88, 170, 312, 343, 429
BstMAI	GTCTC	2 cut(s)	195, 268
BstMBI	GATC	6 cut(s)	55, 85, 167, 309, 340, 426
BstMCI	CGRYCG	1 cut(s)	339
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 362, 523, 561, 620
BstSFI	CTRYAG	1 cut(s)	437
BstSNI	TACGTA	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	451
BstX2I	RGATCY	2 cut(s)	167, 426
BstYI	RGATCY	2 cut(s)	167, 426
BsuRI	GGCC	1 cut(s)	284
BtsCI	GGATG	1 cut(s)	312
BtsIMutI	CAGTG	3 cut(s)	564, 587, 614
BveI	ACCTGC	2 cut(s)	317, 347
CfoI	GCGC	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	283
Csp6I	GTAC	4 cut(s)	22, 131, 207, 211
CviAII	CATG	2 cut(s)	47, 237
CviQI	GTAC	4 cut(s)	22, 131, 207, 211
DdeI	CTNAG	3 cut(s)	567, 590, 617
DinI	GGCGCC	1 cut(s)	64
DpnI	GATC	6 cut(s)	57, 87, 169, 311, 342, 428
DpnII	GATC	6 cut(s)	55, 85, 167, 309, 340, 426
EciI	GGCGGA	1 cut(s)	205
Ecl136II	GAGCTC	3 cut(s)	406, 517, 541
Eco105I	TACGTA	1 cut(s)	210
Eco24I	GRGCYC	3 cut(s)	408, 519, 543
Eco31I	GGTCTC	1 cut(s)	195
Eco53kI	GAGCTC	3 cut(s)	406, 517, 541
EcoICRI	GAGCTC	3 cut(s)	406, 517, 541
EcoT38I	GRGCYC	3 cut(s)	408, 519, 543
EgeI	GGCGCC	1 cut(s)	64
EheI	GGCGCC	1 cut(s)	64
Esp3I	CGTCTC	1 cut(s)	268
FaeI	CATG	2 cut(s)	50, 240
FaiI	YATR	3 cut(s)	48, 238, 625
FatI	CATG	2 cut(s)	46, 236
FauI	CCCGC	1 cut(s)	417
FbaI	TGATCA	2 cut(s)	85, 309
Fnu4HI	GCNGC	4 cut(s)	176, 282, 363, 440
FokI	GGATG	1 cut(s)	299
FriOI	GRGCYC	3 cut(s)	408, 519, 543
Fsp4HI	GCNGC	4 cut(s)	176, 282, 363, 440
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	4 cut(s)	176, 282, 363, 440
GsaI	CCCAGC	1 cut(s)	320
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	284
HapII	CCGG	4 cut(s)	15, 248, 561, 584
HhaI	GCGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	2 cut(s)	50, 240
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HpaII	CCGG	4 cut(s)	15, 248, 561, 584
Hpy188I	TCNGA	5 cut(s)	90, 200, 298, 426, 547
Hpy188III	TCNNGA	1 cut(s)	344
Hpy99I	CGWCG	2 cut(s)	44, 302
HpyAV	CCTTC	4 cut(s)	12, 200, 205, 254
HpyCH4III	ACNGT	3 cut(s)	26, 206, 396
HpyCH4IV	ACGT	2 cut(s)	209, 370
HpyCH4V	TGCA	3 cut(s)	401, 439, 447
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 362, 523, 561, 620
HpyF3I	CTNAG	3 cut(s)	567, 590, 617
HpySE526I	ACGT	2 cut(s)	209, 370
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	50, 240
HspAI	GCGC	1 cut(s)	63
KasI	GGCGCC	1 cut(s)	62
KpnI	GGTACC	1 cut(s)	25
Ksp22I	TGATCA	2 cut(s)	85, 309
Kzo9I	GATC	6 cut(s)	55, 85, 167, 309, 340, 426
LmnI	GCTCC	2 cut(s)	411, 538
Lsp1109I	GCAGC	1 cut(s)	451
MaeII	ACGT	2 cut(s)	209, 370
MaeIII	GTNAC	2 cut(s)	577, 600
MalI	GATC	6 cut(s)	57, 87, 169, 311, 342, 428
MboI	GATC	6 cut(s)	55, 85, 167, 309, 340, 426
MboII	GAAGA	3 cut(s)	324, 362, 499
MflI	RGATCY	2 cut(s)	167, 426
MhlI	GDGCHC	3 cut(s)	408, 519, 543
MluCI	AATT	3 cut(s)	157, 288, 448
Mly113I	GGCGCC	1 cut(s)	63
MmeI	TCCRAC	1 cut(s)	321
MspI	CCGG	4 cut(s)	15, 248, 561, 584
MwoI	GCNNNNNNNGC	5 cut(s)	60, 362, 523, 561, 620
NarI	GGCGCC	1 cut(s)	63
NdeII	GATC	6 cut(s)	55, 85, 167, 309, 340, 426
NlaIII	CATG	2 cut(s)	50, 240
NlaIV	GGNNCC	5 cut(s)	23, 64, 242, 285, 361
NmeAIII	GCCGAG	2 cut(s)	151, 538
NspV	TTCGAA	1 cut(s)	452
PaqCI	CACCTGC	1 cut(s)	347
PcsI	WCGNNNNNNNCGW	1 cut(s)	458
Pfl23II	CGTACG	1 cut(s)	206
PkrI	GCNGC	4 cut(s)	177, 283, 364, 441
PluTI	GGCGCC	1 cut(s)	66
Ppu21I	YACGTR	1 cut(s)	210
Psp124BI	GAGCTC	3 cut(s)	408, 519, 543
PspFI	CCCAGC	1 cut(s)	316
PspLI	CGTACG	1 cut(s)	206
PspN4I	GGNNCC	5 cut(s)	23, 64, 242, 285, 361
PspPI	GGNCC	1 cut(s)	283
PstI	CTGCAG	1 cut(s)	441
PsuI	RGATCY	2 cut(s)	167, 426
RsaI	GTAC	4 cut(s)	23, 132, 208, 212
RsaNI	GTAC	4 cut(s)	22, 131, 207, 211
SacI	GAGCTC	3 cut(s)	408, 519, 543
SatI	GCNGC	4 cut(s)	176, 282, 363, 440
Sau3AI	GATC	6 cut(s)	55, 85, 167, 309, 340, 426
Sau96I	GGNCC	1 cut(s)	283
SduI	GDGCHC	3 cut(s)	408, 519, 543
SfcI	CTRYAG	1 cut(s)	437
SfoI	GGCGCC	1 cut(s)	64
SfuI	TTCGAA	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
SnaBI	TACGTA	1 cut(s)	210
Sse9I	AATT	3 cut(s)	157, 288, 448
SsiI	CCGC	5 cut(s)	175, 216, 281, 363, 410
SspDI	GGCGCC	1 cut(s)	62
SstI	GAGCTC	3 cut(s)	408, 519, 543
TaaI	ACNGT	3 cut(s)	26, 206, 396
TaiI	ACGT	2 cut(s)	212, 373
TaqI	TCGA	4 cut(s)	42, 221, 335, 452
TaqII	GACCGA	1 cut(s)	353
TasI	AATT	3 cut(s)	157, 288, 448
TauI	GCSGC	3 cut(s)	178, 284, 365
TscAI	CASTG	3 cut(s)	571, 594, 621
TseI	GCWGC	1 cut(s)	439
TspRI	CASTG	3 cut(s)	571, 594, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.