Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004083

Physical Location & Seq

Genomic Coordinates Reverse (-)

25671215 .. 25672802

Gene Structure 1588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00186340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCCGAAGAAAAGAAACGGATTCAAGAGAAGGCACCGGTTCGCCGCACACCAAATTCCGGCGAACCCAGCTCCACCAACCACCTCCTCCCATCGCTTTCGCTGTCCGATCACTCAAGTCCCTCCCGTTCGGCGCCAATATCGCTACCATGCTCGACGGTACCTTCCGGCCGACCGCTTCGTCTCGCTCAACAACTCGGCGGCCCTAATTTACGCCGACGGGTCGTTGATCCTCTCGGCACCACCAGGTTCTTCGACCGGTTTGATTGGGAGCTTCAGCCCCTTGGCGCCACGAAACCCTAAGAAGAAGAAGAAGATCCCGAGAAGAAGAAGCGAGAGAAGAAGAAGGAGGAAAAAGAAACGAAAAGAAAAGGAAAAAAATGAATTAACAAAAAAAAAAAGGGCTGTGTCACTAGAGGAGCTCCCCGAACCCCAAAGTTCCAAGAACGAGACTCGAAGGCGATGCCTTGCTCGCTCCTCTGTCCAAGACGGTGACTCCATAGAGGCGGAGCATGCTTCGGGCGGGGTGTCGGTTCGCCATCGAACCGGTGCTAGGAAGGACAAGCATCATCAAGTTCCGGACTTGTCTTCATTTTGGCGGCTTCAAGTCTCACGGGGACAACGTTTGGATGAGGGTGTTGCCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

24.6

Weight (kDa)

11.55

Isoelectric Point (pI)

82.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22580
fragaria_vesca	FvH4_3g29640
malus_domestica	MD03G1136000.v1.1 MD11G1158500.v1.1
prunus_persica	Prupe.6G120300_v2.0.a1
pyrus_communis	pycom03g09190
rosa_chinensis	RchiOBHm_Chr5g0055001
rosa_laevigata	RLG00000034955
rosa_multiflora	Rmu_co8073320.1_g000001 Rmu_sc0000502.1_g000018 Rmu_sc0000631.1_g000027 Rmu_sc0000894.1_g000005 Rmu_sc0001023.1_g000031 Rmu_sc0002590.1_g000009 Rmu_sc0002700.1_g000034 Rmu_sc0002831.1_g000015 Rmu_sc0003351.1_g000004 Rmu_sc0004354.1_g000003 Rmu_sc0007341.1_g000039 Rmu_sc0011695.1_g000003 Rmu_sc0018119.1_g000001 Rmu_ssc0000184.1_g000026 Rmu_ssc0000238.1_g000026
rosa_roxburghii	Rroxscaffold_1G00025510 Rroxscaffold_3G00240200 Rroxscaffold_4G00316460 Rroxscaffold_7G00186340
rosa_rugosa	Rorug05G0289800
rosa_samantha	Rh5AG359900 Rh5BG370900 Rh5CG393200 Rh5DG384700
rosa_wichuraiana	Rw5G033860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
Acc65I	GGTACC	1 cut(s)	159
AccB1I	GGYRCC	5 cut(s)	33, 132, 159, 238, 286
AccIII	TCCGGA	1 cut(s)	577
AciI	CCGC	6 cut(s)	45, 175, 200, 506, 522, 598
AclI	AACGTT	1 cut(s)	622
AclWI	GGATC	2 cut(s)	223, 310
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	54
AcuI	CTGAAG	1 cut(s)	259
AcyI	GRCGYC	2 cut(s)	133, 287
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	2 cut(s)	58, 552
AgeI	ACCGGT	3 cut(s)	36, 257, 545
AgsI	TTSAA	2 cut(s)	25, 605
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	3 cut(s)	71, 273, 421
AluI	AGCT	3 cut(s)	71, 273, 421
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	3 cut(s)	187, 443, 613
AlwI	GGATC	2 cut(s)	223, 310
Ama87I	CYCGRG	1 cut(s)	319
Aor13HI	TCCGGA	1 cut(s)	577
AoxI	GGCC	2 cut(s)	168, 201
ApoI	RAATTY	1 cut(s)	54
AsiGI	ACCGGT	3 cut(s)	36, 257, 545
Asp718I	GGTACC	1 cut(s)	159
AspLEI	GCGC	2 cut(s)	135, 289
AspS9I	GGNCC	1 cut(s)	202
AsuHPI	GGTGA	1 cut(s)	503
AvaI	CYCGRG	1 cut(s)	319
BanI	GGYRCC	5 cut(s)	33, 132, 159, 238, 286
BanII	GRGCYC	1 cut(s)	423
BbsI	GAAGAC	1 cut(s)	579
Bbv12I	GWGCWC	1 cut(s)	423
BccI	CCATC	2 cut(s)	99, 546
BcgI	CGANNNNNNTGC	2 cut(s)	444, 478
BciT130I	CCWGG	1 cut(s)	246
BcoDI	GTCTC	3 cut(s)	187, 443, 613
BfaI	CTAG	2 cut(s)	413, 552
BfoI	RGCGCY	2 cut(s)	136, 290
BisI	GCNGC	3 cut(s)	45, 201, 599
BlsI	GCNGC	3 cut(s)	46, 202, 600
Bme1390I	CCNGG	1 cut(s)	246
BmeT110I	CYCGRG	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	5 cut(s)	35, 134, 161, 240, 288
BmrFI	CCNGG	1 cut(s)	246
BmsI	GCATC	2 cut(s)	452, 574
BpiI	GAAGAC	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	99
BsaHI	GRCGYC	2 cut(s)	133, 287
BsaJI	CCNNGG	1 cut(s)	282
BsaWI	WCCGGW	4 cut(s)	36, 257, 545, 577
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 552
Bse118I	RCCGGY	3 cut(s)	36, 257, 545
BseAI	TCCGGA	1 cut(s)	577
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	634
BseLI	CCNNNNNNNGG	2 cut(s)	58, 552
BseRI	GAGGAG	3 cut(s)	76, 431, 466
BseX3I	CGGCCG	1 cut(s)	168
BseYI	CCCAGC	1 cut(s)	67
Bsh1285I	CGRYCG	3 cut(s)	171, 175, 258
BshFI	GGCC	2 cut(s)	170, 203
BshNI	GGYRCC	5 cut(s)	33, 132, 159, 238, 286
BshTI	ACCGGT	3 cut(s)	36, 257, 545
BsiEI	CGRYCG	3 cut(s)	171, 175, 258
BsiHKAI	GWGCWC	1 cut(s)	423
BsiHKCI	CYCGRG	1 cut(s)	319
BsiSI	CCGG	6 cut(s)	37, 59, 167, 258, 546, 578
BslFI	GGGAC	2 cut(s)	104, 630
BslI	CCNNNNNNNGG	2 cut(s)	58, 552
BsmAI	GTCTC	3 cut(s)	187, 443, 613
BsmBI	CGTCTC	1 cut(s)	187
BsmFI	GGGAC	2 cut(s)	104, 630
BsnI	GGCC	2 cut(s)	170, 203
BsoBI	CYCGRG	1 cut(s)	319
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp13I	TCCGGA	1 cut(s)	577
Bsp143I	GATC	3 cut(s)	108, 228, 315
BspACI	CCGC	6 cut(s)	45, 175, 200, 506, 522, 598
BspANI	GGCC	2 cut(s)	170, 203
BspEI	TCCGGA	1 cut(s)	577
BspLI	GGNNCC	5 cut(s)	35, 134, 161, 240, 288
BspPI	GGATC	2 cut(s)	223, 310
BspT107I	GGYRCC	5 cut(s)	33, 132, 159, 238, 286
BsrFI	RCCGGY	3 cut(s)	36, 257, 545
BssAI	RCCGGY	3 cut(s)	36, 257, 545
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	3 cut(s)	108, 228, 315
BssNI	GRCGYC	2 cut(s)	133, 287
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	159, 491
BstACI	GRCGYC	2 cut(s)	133, 287
BstC8I	GCNNGC	2 cut(s)	472, 513
BstDEI	CTNAG	1 cut(s)	300
BstF5I	GGATG	1 cut(s)	634
BstH2I	RGCGCY	2 cut(s)	136, 290
BstHHI	GCGC	2 cut(s)	135, 289
BstKTI	GATC	3 cut(s)	111, 231, 318
BstMAI	GTCTC	3 cut(s)	187, 443, 613
BstMBI	GATC	3 cut(s)	108, 228, 315
BstMCI	CGRYCG	3 cut(s)	171, 175, 258
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 141, 471, 512
BstNI	CCWGG	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	515
BstSCI	CCNGG	1 cut(s)	244
BstV2I	GAAGAC	1 cut(s)	579
BstX2I	RGATCY	1 cut(s)	315
BstYI	RGATCY	1 cut(s)	315
BstZI	CGGCCG	1 cut(s)	168
BsuRI	GGCC	2 cut(s)	170, 203
BtgZI	GCGATG	2 cut(s)	77, 475
BtsCI	GGATG	1 cut(s)	634
Cac8I	GCNNGC	2 cut(s)	472, 513
CfoI	GCGC	2 cut(s)	135, 289
Cfr10I	RCCGGY	3 cut(s)	36, 257, 545
Cfr13I	GGNCC	1 cut(s)	202
CsiI	ACCWGGT	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	160
CspAI	ACCGGT	3 cut(s)	36, 257, 545
CviAII	CATG	2 cut(s)	149, 512
CviJI	RGCY	8 cut(s)	71, 170, 203, 273, 279, 404, 421, 601
CviKI_1	RGCY	8 cut(s)	71, 170, 203, 273, 279, 404, 421, 601
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	1 cut(s)	300
DinI	GGCGCC	2 cut(s)	134, 288
DpnI	GATC	3 cut(s)	110, 230, 317
DpnII	GATC	3 cut(s)	108, 228, 315
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
EaeI	YGGCCR	1 cut(s)	168
EagI	CGGCCG	1 cut(s)	168
EciI	GGCGGA	1 cut(s)	521
Ecl136II	GAGCTC	1 cut(s)	421
EclXI	CGGCCG	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	423
Eco52I	CGGCCG	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	421
Eco57I	CTGAAG	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	319
EcoICRI	GAGCTC	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	423
EgeI	GGCGCC	2 cut(s)	134, 288
EheI	GGCGCC	2 cut(s)	134, 288
ErhI	CCWWGG	1 cut(s)	282
Esp3I	CGTCTC	1 cut(s)	187
FaeI	CATG	2 cut(s)	152, 515
FaiI	YATR	3 cut(s)	150, 500, 513
FaqI	GGGAC	2 cut(s)	104, 630
FatI	CATG	2 cut(s)	148, 511
FauI	CCCGC	1 cut(s)	515
Fnu4HI	GCNGC	3 cut(s)	45, 201, 599
FokI	GGATG	1 cut(s)	641
FriOI	GRGCYC	1 cut(s)	423
Fsp4HI	GCNGC	3 cut(s)	45, 201, 599
FspBI	CTAG	2 cut(s)	413, 552
GlaI	GCGC	2 cut(s)	134, 288
GluI	GCNGC	3 cut(s)	45, 201, 599
GsaI	CCCAGC	1 cut(s)	71
HaeII	RGCGCY	2 cut(s)	136, 290
HaeIII	GGCC	2 cut(s)	170, 203
HapII	CCGG	6 cut(s)	37, 59, 167, 258, 546, 578
HhaI	GCGC	2 cut(s)	135, 289
Hin1I	GRCGYC	2 cut(s)	133, 287
Hin1II	CATG	2 cut(s)	152, 515
Hin6I	GCGC	2 cut(s)	133, 287
HinP1I	GCGC	2 cut(s)	133, 287
HinfI	GANTC	3 cut(s)	21, 451, 494
HpaII	CCGG	6 cut(s)	37, 59, 167, 258, 546, 578
HphI	GGTGA	1 cut(s)	503
Hpy188I	TCNGA	1 cut(s)	108
Hpy188III	TCNNGA	3 cut(s)	25, 319, 578
Hpy99I	CGWCG	2 cut(s)	159, 221
HpyAV	CCTTC	5 cut(s)	24, 173, 339, 450, 550
HpyCH4III	ACNGT	2 cut(s)	159, 491
HpyCH4IV	ACGT	1 cut(s)	622
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 141, 471, 512
HpyF3I	CTNAG	1 cut(s)	300
HpySE526I	ACGT	1 cut(s)	622
Hsp92I	GRCGYC	2 cut(s)	133, 287
Hsp92II	CATG	2 cut(s)	152, 515
HspAI	GCGC	2 cut(s)	133, 287
KasI	GGCGCC	2 cut(s)	132, 286
Kpn2I	TCCGGA	1 cut(s)	577
KpnI	GGTACC	1 cut(s)	163
Kzo9I	GATC	3 cut(s)	108, 228, 315
LmnI	GCTCC	6 cut(s)	76, 270, 418, 426, 479, 508
LpnPI	CCDG	9 cut(s)	50, 72, 81, 180, 231, 258, 271, 559, 591
LweI	GCATC	2 cut(s)	452, 574
MabI	ACCWGGT	1 cut(s)	244
MaeI	CTAG	2 cut(s)	413, 552
MaeII	ACGT	1 cut(s)	622
MaeIII	GTNAC	2 cut(s)	408, 491
MalI	GATC	3 cut(s)	110, 230, 317
MboI	GATC	3 cut(s)	108, 228, 315
MflI	RGATCY	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	423
MluCI	AATT	3 cut(s)	54, 207, 383
Mly113I	GGCGCC	2 cut(s)	133, 287
MlyI	GAGTC	2 cut(s)	445, 488
MnlI	CCTC	9 cut(s)	94, 97, 132, 242, 342, 409, 487, 496, 625
MroI	TCCGGA	1 cut(s)	577
MseI	TTAA	1 cut(s)	386
MspI	CCGG	6 cut(s)	37, 59, 167, 258, 546, 578
MspR9I	CCNGG	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	4 cut(s)	68, 141, 471, 512
NarI	GGCGCC	2 cut(s)	133, 287
NdeII	GATC	3 cut(s)	108, 228, 315
NlaIII	CATG	2 cut(s)	152, 515
NlaIV	GGNNCC	5 cut(s)	35, 134, 161, 240, 288
NmeAIII	GCCGAG	2 cut(s)	176, 215
NmuCI	GTSAC	2 cut(s)	408, 491
NspI	RCATGY	1 cut(s)	515
PaeI	GCATGC	1 cut(s)	515
PcsI	WCGNNNNNNNCGW	1 cut(s)	619
PfeI	GAWTC	1 cut(s)	21
PinAI	ACCGGT	3 cut(s)	36, 257, 545
PkrI	GCNGC	3 cut(s)	46, 202, 600
PleI	GAGTC	2 cut(s)	445, 488
PluTI	GGCGCC	2 cut(s)	136, 290
PpsI	GAGTC	2 cut(s)	445, 488
Psp124BI	GAGCTC	1 cut(s)	423
Psp1406I	AACGTT	1 cut(s)	622
Psp6I	CCWGG	1 cut(s)	244
PspFI	CCCAGC	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	5 cut(s)	35, 134, 161, 240, 288
PspPI	GGNCC	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	315
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SacI	GAGCTC	1 cut(s)	423
SaqAI	TTAA	1 cut(s)	386
SatI	GCNGC	3 cut(s)	45, 201, 599
Sau3AI	GATC	3 cut(s)	108, 228, 315
Sau96I	GGNCC	1 cut(s)	202
SchI	GAGTC	2 cut(s)	445, 488
ScrFI	CCNGG	1 cut(s)	246
SduI	GDGCHC	1 cut(s)	423
SetI	ASST	7 cut(s)	73, 86, 165, 250, 275, 423, 625
SexAI	ACCWGGT	1 cut(s)	244
SfaNI	GCATC	2 cut(s)	452, 574
SfoI	GGCGCC	2 cut(s)	134, 288
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
SphI	GCATGC	1 cut(s)	515
Sse9I	AATT	3 cut(s)	54, 207, 383
SsiI	CCGC	6 cut(s)	45, 175, 200, 506, 522, 598
SspDI	GGCGCC	2 cut(s)	132, 286
SspMI	CTAG	2 cut(s)	413, 552
SstI	GAGCTC	1 cut(s)	423
StyD4I	CCNGG	1 cut(s)	244
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	2 cut(s)	159, 491
TaiI	ACGT	1 cut(s)	625
TaqI	TCGA	4 cut(s)	154, 254, 454, 541
TasI	AATT	3 cut(s)	54, 207, 383
TauI	GCSGC	3 cut(s)	47, 203, 601
TfiI	GAWTC	1 cut(s)	21
Tru1I	TTAA	1 cut(s)	386
Tru9I	TTAA	1 cut(s)	386
TseFI	GTSAC	2 cut(s)	408, 491
Tsp45I	GTSAC	2 cut(s)	408, 491
TspDTI	ATGAA	2 cut(s)	396, 579
TspGWI	ACGGA	1 cut(s)	33
XapI	RAATTY	1 cut(s)	54
XceI	RCATGY	1 cut(s)	515
XspI	CTAG	2 cut(s)	413, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.