Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002590.1

Orthogroup ID

OG0004083

Physical Location & Seq

Genomic Coordinates Forward (+)

40589 .. 41101

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002590.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ctgtccagttctagggaagccattttagctattcttcttctctttcctcctctctctctcctctccttctcctccgcccaaaccatcactaatgccgccgagatcctctccaattcctgctacaaatccatctccctcgcactcctgtggattaaccacctcctcctatcgctttccctgtctgatcactcgagtccctcccgttcggcgccaagatcgctaccatgctcgacggctactctctcacggtaccttccggctgaacgcctcgtctcgctcaacaactcggcgaccccaatttacgccgacgggtcgttgatcatctcagcaccagtaggttcttcgaccggtatcgggttcgattggaagcttcagccccaagctgcttggcgccgccaaactctaagaagaagaagaagaaaatcccagaagaagaagaatgaagaagaagaaggaagaaaaagaaatgaaaagaaaaggaaaaaaaatgaattaacaaaaaaaaaagggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

18.92

Weight (kDa)

10.59

Isoelectric Point (pI)

76.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22580
fragaria_vesca	FvH4_3g29640
malus_domestica	MD03G1136000.v1.1 MD11G1158500.v1.1
prunus_persica	Prupe.6G120300_v2.0.a1
pyrus_communis	pycom03g09190
rosa_chinensis	RchiOBHm_Chr5g0055001
rosa_laevigata	RLG00000034955
rosa_multiflora	Rmu_co8073320.1_g000001 Rmu_sc0000502.1_g000018 Rmu_sc0000631.1_g000027 Rmu_sc0000894.1_g000005 Rmu_sc0001023.1_g000031 Rmu_sc0002590.1_g000009 Rmu_sc0002700.1_g000034 Rmu_sc0002831.1_g000015 Rmu_sc0003351.1_g000004 Rmu_sc0004354.1_g000003 Rmu_sc0007341.1_g000039 Rmu_sc0011695.1_g000003 Rmu_sc0018119.1_g000001 Rmu_ssc0000184.1_g000026 Rmu_ssc0000238.1_g000026
rosa_roxburghii	Rroxscaffold_1G00025510 Rroxscaffold_3G00240200 Rroxscaffold_4G00316460 Rroxscaffold_7G00186340
rosa_rugosa	Rorug05G0289800
rosa_samantha	Rh5AG359900 Rh5BG370900 Rh5CG393200 Rh5DG384700
rosa_wichuraiana	Rw5G033860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	249
AccB1I	GGYRCC	3 cut(s)	208, 249, 390
AciI	CCGC	3 cut(s)	75, 96, 394
AclWI	GGATC	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	356
AcyI	GRCGYC	2 cut(s)	209, 391
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	2 cut(s)	12, 354
AgeI	ACCGGT	1 cut(s)	347
AleI	CACNNNNGTG	1 cut(s)	145
AluBI	AGCT	3 cut(s)	29, 370, 383
AluI	AGCT	3 cut(s)	29, 370, 383
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	1 cut(s)	97
Ama87I	CYCGRG	1 cut(s)	190
ApeKI	GCWGC	1 cut(s)	383
AsiGI	ACCGGT	1 cut(s)	347
Asp718I	GGTACC	1 cut(s)	249
AspLEI	GCGC	2 cut(s)	211, 393
AvaI	CYCGRG	1 cut(s)	190
BanI	GGYRCC	3 cut(s)	208, 249, 390
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	2 cut(s)	92, 137
BceAI	ACGGC	1 cut(s)	249
BclI	TGATCA	2 cut(s)	184, 318
BcoDI	GTCTC	1 cut(s)	277
BfaI	CTAG	1 cut(s)	12
BfoI	RGCGCY	2 cut(s)	212, 394
BisI	GCNGC	3 cut(s)	96, 384, 394
BlsI	GCNGC	3 cut(s)	97, 385, 395
BmeT110I	CYCGRG	1 cut(s)	190
BmiI	GGNNCC	3 cut(s)	210, 251, 392
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
BsaHI	GRCGYC	2 cut(s)	209, 391
BsaWI	WCCGGW	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 354
Bse118I	RCCGGY	1 cut(s)	347
Bse1I	ACTGG	2 cut(s)	6, 332
BseLI	CCNNNNNNNGG	2 cut(s)	12, 354
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	2 cut(s)	6, 332
BseRI	GAGGAG	4 cut(s)	39, 50, 61, 152
BseXI	GCAGC	1 cut(s)	370
Bsh1285I	CGRYCG	1 cut(s)	348
BshNI	GGYRCC	3 cut(s)	208, 249, 390
BshTI	ACCGGT	1 cut(s)	347
BsiEI	CGRYCG	1 cut(s)	348
BsiHKCI	CYCGRG	1 cut(s)	190
BsiSI	CCGG	2 cut(s)	257, 348
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	2 cut(s)	12, 354
BsmAI	GTCTC	1 cut(s)	277
BsmBI	CGTCTC	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	180
BsoBI	CYCGRG	1 cut(s)	190
Bsp143I	GATC	4 cut(s)	102, 184, 215, 318
BspACI	CCGC	3 cut(s)	75, 96, 394
BspCNI	CTCAG	1 cut(s)	338
BspLI	GGNNCC	3 cut(s)	210, 251, 392
BspPI	GGATC	1 cut(s)	97
BspT107I	GGYRCC	3 cut(s)	208, 249, 390
BsrFI	RCCGGY	1 cut(s)	347
BsrI	ACTGG	2 cut(s)	6, 332
BssAI	RCCGGY	1 cut(s)	347
BssMI	GATC	4 cut(s)	102, 184, 215, 318
BssNI	GRCGYC	2 cut(s)	209, 391
Bst4CI	ACNGT	1 cut(s)	249
BstACI	GRCGYC	2 cut(s)	209, 391
BstDEI	CTNAG	2 cut(s)	325, 404
BstH2I	RGCGCY	2 cut(s)	212, 394
BstHHI	GCGC	2 cut(s)	211, 393
BstKTI	GATC	4 cut(s)	105, 187, 218, 321
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	4 cut(s)	102, 184, 215, 318
BstMCI	CGRYCG	1 cut(s)	348
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 217
BstV1I	GCAGC	1 cut(s)	370
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
CfoI	GCGC	2 cut(s)	211, 393
Cfr10I	RCCGGY	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	250
CspAI	ACCGGT	1 cut(s)	347
CviAII	CATG	1 cut(s)	225
CviJI	RGCY	7 cut(s)	20, 29, 236, 260, 370, 376, 383
CviKI_1	RGCY	7 cut(s)	20, 29, 236, 260, 370, 376, 383
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	2 cut(s)	325, 404
DinI	GGCGCC	2 cut(s)	210, 392
DpnI	GATC	4 cut(s)	104, 186, 217, 320
DpnII	GATC	4 cut(s)	102, 184, 215, 318
EciI	GGCGGA	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	356
Eco88I	CYCGRG	1 cut(s)	190
EgeI	GGCGCC	2 cut(s)	210, 392
EheI	GGCGCC	2 cut(s)	210, 392
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	1 cut(s)	228
FaiI	YATR	1 cut(s)	226
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	1 cut(s)	224
FbaI	TGATCA	2 cut(s)	184, 318
Fnu4HI	GCNGC	3 cut(s)	96, 384, 394
Fsp4HI	GCNGC	3 cut(s)	96, 384, 394
FspBI	CTAG	1 cut(s)	12
GlaI	GCGC	2 cut(s)	210, 392
GluI	GCNGC	3 cut(s)	96, 384, 394
HaeII	RGCGCY	2 cut(s)	212, 394
HapII	CCGG	2 cut(s)	257, 348
HhaI	GCGC	2 cut(s)	211, 393
Hin1I	GRCGYC	2 cut(s)	209, 391
Hin1II	CATG	1 cut(s)	228
Hin6I	GCGC	2 cut(s)	209, 391
HinP1I	GCGC	2 cut(s)	209, 391
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	1 cut(s)	193
HpaII	CCGG	2 cut(s)	257, 348
Hpy188I	TCNGA	1 cut(s)	184
Hpy99I	CGWCG	2 cut(s)	235, 311
HpyAV	CCTTC	3 cut(s)	76, 263, 446
HpyCH4III	ACNGT	1 cut(s)	249
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 217
HpyF3I	CTNAG	2 cut(s)	325, 404
Hsp92I	GRCGYC	2 cut(s)	209, 391
Hsp92II	CATG	1 cut(s)	228
HspAI	GCGC	2 cut(s)	209, 391
KasI	GGCGCC	2 cut(s)	208, 390
KpnI	GGTACC	1 cut(s)	253
Ksp22I	TGATCA	2 cut(s)	184, 318
Kzo9I	GATC	4 cut(s)	102, 184, 215, 318
LpnPI	CCDG	8 cut(s)	19, 130, 158, 191, 270, 345, 361, 440
Lsp1109I	GCAGC	1 cut(s)	370
MaeI	CTAG	1 cut(s)	12
MalI	GATC	4 cut(s)	104, 186, 217, 320
MboI	GATC	4 cut(s)	102, 184, 215, 318
MflI	RGATCY	1 cut(s)	102
MluCI	AATT	3 cut(s)	112, 297, 491
Mly113I	GGCGCC	2 cut(s)	209, 391
MlyI	GAGTC	1 cut(s)	202
MseI	TTAA	2 cut(s)	153, 494
MslI	CAYNNNNRTG	1 cut(s)	145
MspI	CCGG	2 cut(s)	257, 348
MwoI	GCNNNNNNNGC	2 cut(s)	26, 217
NarI	GGCGCC	2 cut(s)	209, 391
NdeII	GATC	4 cut(s)	102, 184, 215, 318
NlaIII	CATG	1 cut(s)	228
NlaIV	GGNNCC	3 cut(s)	210, 251, 392
NmeAIII	GCCGAG	2 cut(s)	124, 266
OliI	CACNNNNGTG	1 cut(s)	145
PaeR7I	CTCGAG	1 cut(s)	190
PinAI	ACCGGT	1 cut(s)	347
PkrI	GCNGC	3 cut(s)	97, 385, 395
PleI	GAGTC	1 cut(s)	201
PluTI	GGCGCC	2 cut(s)	212, 394
PpsI	GAGTC	1 cut(s)	201
PspN4I	GGNNCC	3 cut(s)	210, 251, 392
PspXI	VCTCGAGB	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	102
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	145
SaqAI	TTAA	2 cut(s)	153, 494
SatI	GCNGC	3 cut(s)	96, 384, 394
Sau3AI	GATC	4 cut(s)	102, 184, 215, 318
SchI	GAGTC	1 cut(s)	202
SetI	ASST	6 cut(s)	31, 162, 255, 340, 372, 385
SfoI	GGCGCC	2 cut(s)	210, 392
Sfr274I	CTCGAG	1 cut(s)	190
SlaI	CTCGAG	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	145
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	3 cut(s)	112, 297, 491
SsiI	CCGC	3 cut(s)	75, 96, 394
SspDI	GGCGCC	2 cut(s)	208, 390
SspMI	CTAG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	249
TaqI	TCGA	4 cut(s)	191, 230, 344, 360
TasI	AATT	3 cut(s)	112, 297, 491
TauI	GCSGC	2 cut(s)	98, 396
Tru1I	TTAA	2 cut(s)	153, 494
Tru9I	TTAA	2 cut(s)	153, 494
TseI	GCWGC	1 cut(s)	383
TspDTI	ATGAA	3 cut(s)	456, 483, 504
XhoI	CTCGAG	1 cut(s)	190
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.