Rmu_sc0003351.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003351.1
OG0004083
Physical Location & Seq
Reverse (-)
6163 .. 6480
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003351.1_g000004.1.cds

Sequence Viewer

Length: 318 bp
atgaagcaggcggcttctgatgatggtgaggatgatgatgatctcgggtttgttcctgaggccttgatgtgtactccatttaaaagggtgggtctttttcaccagcagaagcagagaaaaccagaccttgtcttgctcaacaactcggcggccccaatttacgccgacaggtcgttgatcatctcggcaccagcaggttcttcgaccggtatcgggttcgattgggagcttcagccccaagctgcttggagccacgaaaccctaagaagaagaaaatcccagaagaagaaggaagaaaaagaaaaggaaaaaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.86

Weight (kDa)

7.85

Isoelectric Point (pI)

61.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 185
AccB1I GGYRCC 1 cut(s) 187
AciI CCGC 2 cut(s) 11, 149
AcuI CTGAAG 1 cut(s) 215
AfaI GTAC 1 cut(s) 73
AfiI CCNNNNNNNGG 1 cut(s) 213
AgeI ACCGGT 1 cut(s) 206
AluBI AGCT 2 cut(s) 229, 242
AluI AGCT 2 cut(s) 229, 242
Ama87I CYCGRG 1 cut(s) 44
AoxI GGCC 2 cut(s) 60, 150
ApeKI GCWGC 1 cut(s) 242
AsiGI ACCGGT 1 cut(s) 206
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 2 cut(s) 38, 92
AvaI CYCGRG 1 cut(s) 44
AxyI CCTNAGG 1 cut(s) 57
BanI GGYRCC 1 cut(s) 187
BbvI GCAGC 1 cut(s) 229
BccI CCATC 1 cut(s) 17
BcgI CGANNNNNNTGC 2 cut(s) 183, 217
BclI TGATCA 1 cut(s) 177
BfuAI ACCTGC 1 cut(s) 185
BisI GCNGC 3 cut(s) 12, 150, 243
BlsI GCNGC 3 cut(s) 13, 151, 244
BmeT110I CYCGRG 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 3 cut(s) 153, 189, 251
BsaBI GATNNNNATC 1 cut(s) 39
BsaWI WCCGGW 1 cut(s) 206
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse118I RCCGGY 1 cut(s) 206
Bse21I CCTNAGG 1 cut(s) 57
Bse8I GATNNNNATC 1 cut(s) 39
BseGI GGATG 1 cut(s) 37
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 213
BseMII CTCAG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 229
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 2 cut(s) 62, 152
BshNI GGYRCC 1 cut(s) 187
BshTI ACCGGT 1 cut(s) 206
BsiEI CGRYCG 1 cut(s) 207
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 1 cut(s) 207
BslI CCNNNNNNNGG 1 cut(s) 213
BsnI GGCC 2 cut(s) 62, 152
BsoBI CYCGRG 1 cut(s) 44
Bsp143I GATC 2 cut(s) 40, 177
BspACI CCGC 2 cut(s) 11, 149
BspANI GGCC 2 cut(s) 62, 152
BspCNI CTCAG 1 cut(s) 49
BspLI GGNNCC 3 cut(s) 153, 189, 251
BspMI ACCTGC 1 cut(s) 185
BspT107I GGYRCC 1 cut(s) 187
BsrFI RCCGGY 1 cut(s) 206
BssAI RCCGGY 1 cut(s) 206
BssMI GATC 2 cut(s) 40, 177
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 2 cut(s) 57, 263
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 2 cut(s) 43, 180
BstMBI GATC 2 cut(s) 40, 177
BstMCI CGRYCG 1 cut(s) 207
BstV1I GCAGC 1 cut(s) 229
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 2 cut(s) 62, 152
BtsCI GGATG 1 cut(s) 37
BveI ACCTGC 1 cut(s) 185
Cac8I GCNNGC 1 cut(s) 9
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 72
CspAI ACCGGT 1 cut(s) 206
CviJI RGCY 7 cut(s) 14, 62, 152, 229, 235, 242, 252
CviKI_1 RGCY 7 cut(s) 14, 62, 152, 229, 235, 242, 252
CviQI GTAC 1 cut(s) 72
DdeI CTNAG 2 cut(s) 57, 263
DpnI GATC 2 cut(s) 42, 179
DpnII GATC 2 cut(s) 40, 177
DraI TTTAAA 1 cut(s) 82
Eco147I AGGCCT 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 215
Eco81I CCTNAGG 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 44
FbaI TGATCA 1 cut(s) 177
Fnu4HI GCNGC 3 cut(s) 12, 150, 243
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 3 cut(s) 12, 150, 243
GluI GCNGC 3 cut(s) 12, 150, 243
HaeIII GGCC 2 cut(s) 62, 152
HapII CCGG 1 cut(s) 207
HpaII CCGG 1 cut(s) 207
HphI GGTGA 2 cut(s) 38, 92
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 1 cut(s) 72
HpyAV CCTTC 1 cut(s) 283
HpyF3I CTNAG 2 cut(s) 57, 263
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 2 cut(s) 40, 177
LmnI GCTCC 2 cut(s) 226, 249
LpnPI CCDG 8 cut(s) 69, 116, 135, 154, 180, 204, 220, 293
Lsp1109I GCAGC 1 cut(s) 229
MalI GATC 2 cut(s) 42, 179
MboI GATC 2 cut(s) 40, 177
MboII GAAGA 6 cut(s) 192, 279, 282, 295, 298, 305
MluCI AATT 1 cut(s) 156
MnlI CCTC 2 cut(s) 22, 52
MseI TTAA 1 cut(s) 81
MspI CCGG 1 cut(s) 207
NdeII GATC 2 cut(s) 40, 177
NlaIV GGNNCC 3 cut(s) 153, 189, 251
NmeAIII GCCGAG 2 cut(s) 125, 164
PceI AGGCCT 1 cut(s) 62
PflFI GACNNNGTC 1 cut(s) 128
PinAI ACCGGT 1 cut(s) 206
PkrI GCNGC 3 cut(s) 13, 151, 244
PspN4I GGNNCC 3 cut(s) 153, 189, 251
PspPI GGNCC 1 cut(s) 151
PsyI GACNNNGTC 1 cut(s) 128
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 3 cut(s) 12, 150, 243
Sau3AI GATC 2 cut(s) 40, 177
Sau96I GGNCC 1 cut(s) 151
SetI ASST 5 cut(s) 129, 173, 199, 231, 244
Sse9I AATT 1 cut(s) 156
SseBI AGGCCT 1 cut(s) 62
SsiI CCGC 2 cut(s) 11, 149
StuI AGGCCT 1 cut(s) 62
TaqI TCGA 2 cut(s) 203, 219
TasI AATT 1 cut(s) 156
TatI WGTACW 1 cut(s) 71
TauI GCSGC 2 cut(s) 14, 152
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.