Rmu_co8073320.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8073320.1
OG0004083
Physical Location & Seq
Forward (+)
1 .. 578
578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8073320.1_g000001.1.cds

Sequence Viewer

Length: 310 bp
gaccgccgagttgttgagcaagacaaggcgttcagccgaaaggtaccgtgagagagtggccgtcgagcttggtctctcacggtacctttcggctgaacgccttgtctcgctcaacaactcggcgaccccaatttacgccgacgggtcgttgatcatctcagcaccagcaggttcttcgatcggtatcgggttcaattggaagcttcagccccaagctacttggcgccgggaaaccctaagaagaagaagaagaaaatcccagaagaagaagaaggaagaaaaagaaatgaaaagaaaaggaaaaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.77

Weight (kDa)

11.17

Isoelectric Point (pI)

65.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 159
Acc65I GGTACC 2 cut(s) 43, 82
AccB1I GGYRCC 3 cut(s) 43, 82, 223
AciI CCGC 1 cut(s) 4
AcoI YGGCCR 1 cut(s) 58
AcuI CTGAAG 1 cut(s) 189
AcyI GRCGYC 1 cut(s) 224
AfaI GTAC 2 cut(s) 45, 84
AgsI TTSAA 1 cut(s) 194
AluBI AGCT 3 cut(s) 68, 203, 216
AluI AGCT 3 cut(s) 68, 203, 216
Alw26I GTCTC 2 cut(s) 78, 110
AoxI GGCC 1 cut(s) 58
Asp718I GGTACC 2 cut(s) 43, 82
AspLEI GCGC 1 cut(s) 226
AsuC2I CCSGG 1 cut(s) 228
BanI GGYRCC 3 cut(s) 43, 82, 223
BceAI ACGGC 1 cut(s) 45
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BclI TGATCA 1 cut(s) 151
BcnI CCSGG 1 cut(s) 228
BcoDI GTCTC 2 cut(s) 78, 110
BfoI RGCGCY 1 cut(s) 227
BfuAI ACCTGC 1 cut(s) 159
Bme1390I CCNGG 1 cut(s) 228
BmiI GGNNCC 3 cut(s) 45, 84, 225
BmrFI CCNGG 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 228
BsaBI GATNNNNATC 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 224
BsaI GGTCTC 1 cut(s) 78
Bse8I GATNNNNATC 1 cut(s) 183
BseJI GATNNNNATC 1 cut(s) 183
BseMII CTCAG 1 cut(s) 172
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 1 cut(s) 60
BshNI GGYRCC 3 cut(s) 43, 82, 223
BsiEI CGRYCG 1 cut(s) 181
BsiSI CCGG 1 cut(s) 227
BsmAI GTCTC 2 cut(s) 78, 110
BsnI GGCC 1 cut(s) 60
Bso31I GGTCTC 1 cut(s) 78
Bsp143I GATC 2 cut(s) 151, 178
BspACI CCGC 1 cut(s) 4
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 1 cut(s) 171
BspLI GGNNCC 3 cut(s) 45, 84, 225
BspMI ACCTGC 1 cut(s) 159
BspT107I GGYRCC 3 cut(s) 43, 82, 223
BspTNI GGTCTC 1 cut(s) 78
BssMI GATC 2 cut(s) 151, 178
BssNI GRCGYC 1 cut(s) 224
Bst4CI ACNGT 2 cut(s) 48, 82
BstACI GRCGYC 1 cut(s) 224
BstDEI CTNAG 2 cut(s) 158, 237
BstH2I RGCGCY 1 cut(s) 227
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 2 cut(s) 154, 181
BstMAI GTCTC 2 cut(s) 78, 110
BstMBI GATC 2 cut(s) 151, 178
BstMCI CGRYCG 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 226
BsuRI GGCC 1 cut(s) 60
BveI ACCTGC 1 cut(s) 159
CfoI GCGC 1 cut(s) 226
Csp6I GTAC 2 cut(s) 44, 83
CviJI RGCY 7 cut(s) 36, 60, 68, 93, 203, 209, 216
CviKI_1 RGCY 7 cut(s) 36, 60, 68, 93, 203, 209, 216
CviQI GTAC 2 cut(s) 44, 83
DdeI CTNAG 2 cut(s) 158, 237
DinI GGCGCC 1 cut(s) 225
DpnI GATC 2 cut(s) 153, 180
DpnII GATC 2 cut(s) 151, 178
EaeI YGGCCR 1 cut(s) 58
Eco31I GGTCTC 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 189
EgeI GGCGCC 1 cut(s) 225
EheI GGCGCC 1 cut(s) 225
FbaI TGATCA 1 cut(s) 151
GlaI GCGC 1 cut(s) 225
HaeII RGCGCY 1 cut(s) 227
HaeIII GGCC 1 cut(s) 60
HapII CCGG 1 cut(s) 227
HhaI GCGC 1 cut(s) 226
Hin1I GRCGYC 1 cut(s) 224
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HindIII AAGCTT 1 cut(s) 201
HpaII CCGG 1 cut(s) 227
Hpy99I CGWCG 2 cut(s) 66, 144
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 2 cut(s) 48, 82
HpyF3I CTNAG 2 cut(s) 158, 237
Hsp92I GRCGYC 1 cut(s) 224
HspAI GCGC 1 cut(s) 224
KasI GGCGCC 1 cut(s) 223
KpnI GGTACC 2 cut(s) 47, 86
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 2 cut(s) 151, 178
LpnPI CCDG 4 cut(s) 154, 178, 240, 273
MalI GATC 2 cut(s) 153, 180
MboI GATC 2 cut(s) 151, 178
MboII GAAGA 9 cut(s) 166, 253, 256, 259, 262, 275, 278, 281, 288
MfeI CAATTG 1 cut(s) 194
MluCI AATT 2 cut(s) 130, 194
Mly113I GGCGCC 1 cut(s) 224
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 1 cut(s) 228
MunI CAATTG 1 cut(s) 194
NarI GGCGCC 1 cut(s) 224
NciI CCSGG 1 cut(s) 228
NdeII GATC 2 cut(s) 151, 178
NlaIV GGNNCC 3 cut(s) 45, 84, 225
NmeAIII GCCGAG 2 cut(s) 32, 99
Ple19I CGATCG 1 cut(s) 181
PluTI GGCGCC 1 cut(s) 227
PspN4I GGNNCC 3 cut(s) 45, 84, 225
PvuI CGATCG 1 cut(s) 181
RsaI GTAC 2 cut(s) 45, 84
RsaNI GTAC 2 cut(s) 44, 83
Sau3AI GATC 2 cut(s) 151, 178
ScrFI CCNGG 1 cut(s) 228
SetI ASST 6 cut(s) 45, 70, 88, 173, 205, 218
SfoI GGCGCC 1 cut(s) 225
Sse9I AATT 2 cut(s) 130, 194
SsiI CCGC 1 cut(s) 4
SspDI GGCGCC 1 cut(s) 223
StyD4I CCNGG 1 cut(s) 226
TaaI ACNGT 2 cut(s) 48, 82
TaqI TCGA 2 cut(s) 64, 177
TasI AATT 2 cut(s) 130, 194
TspDTI ATGAA 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.