Rmu_ssc0000238.1_g000026

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000238.1
OG0004083
Physical Location & Seq
Forward (+)
107982 .. 108299
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000238.1_g000026.1.cds

Sequence Viewer

Length: 318 bp
atgaagcaggcggcttctgatgatggtgaggaggatgatgttctcaggtttgttcctcaggccttgatgtgtactccatttaaaagggtgggtctttttcaccagcagaagcagagaaaaccagaccttgtctcgctcaacaactcggcagccccaatttacgccgacaggtcgttgatcatctcggcaccagtaggtttttcgaccggtatcgggtttgattgggagcttcaaccccaagctacttggcgccacgaaaccctaagaagaagaaaatcccagaagaagaaggaagaaaaagaaaaggaaaaaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.11

Weight (kDa)

9.52

Isoelectric Point (pI)

64.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 187, 249
AciI CCGC 1 cut(s) 11
AcyI GRCGYC 1 cut(s) 250
AfaI GTAC 1 cut(s) 73
AfiI CCNNNNNNNGG 1 cut(s) 213
AgeI ACCGGT 1 cut(s) 206
AgsI TTSAA 1 cut(s) 233
AluBI AGCT 2 cut(s) 229, 242
AluI AGCT 2 cut(s) 229, 242
Alw26I GTCTC 1 cut(s) 136
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 149
AsiGI ACCGGT 1 cut(s) 206
AspLEI GCGC 1 cut(s) 252
AsuHPI GGTGA 2 cut(s) 38, 92
AxyI CCTNAGG 1 cut(s) 57
BanI GGYRCC 2 cut(s) 187, 249
BbvI GCAGC 1 cut(s) 161
BccI CCATC 1 cut(s) 17
BclI TGATCA 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 136
BfoI RGCGCY 1 cut(s) 253
BisI GCNGC 2 cut(s) 12, 150
BlsI GCNGC 2 cut(s) 13, 151
BmiI GGNNCC 2 cut(s) 189, 251
BsaHI GRCGYC 1 cut(s) 250
BsaWI WCCGGW 1 cut(s) 206
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 191
Bse21I CCTNAGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 58, 71
BseNI ACTGG 1 cut(s) 191
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 161
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 1 cut(s) 62
BshNI GGYRCC 2 cut(s) 187, 249
BshTI ACCGGT 1 cut(s) 206
BsiEI CGRYCG 1 cut(s) 207
BsiSI CCGG 1 cut(s) 207
BslI CCNNNNNNNGG 1 cut(s) 213
BsmAI GTCTC 1 cut(s) 136
BsnI GGCC 1 cut(s) 62
Bsp143I GATC 1 cut(s) 177
BspACI CCGC 1 cut(s) 11
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 2 cut(s) 57, 70
BspLI GGNNCC 2 cut(s) 189, 251
BspT107I GGYRCC 2 cut(s) 187, 249
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 1 cut(s) 191
BssAI RCCGGY 1 cut(s) 206
BssMI GATC 1 cut(s) 177
BssNI GRCGYC 1 cut(s) 250
BstACI GRCGYC 1 cut(s) 250
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 3 cut(s) 44, 57, 263
BstF5I GGATG 1 cut(s) 40
BstH2I RGCGCY 1 cut(s) 253
BstHHI GCGC 1 cut(s) 252
BstKTI GATC 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 1 cut(s) 177
BstMCI CGRYCG 1 cut(s) 207
BstV1I GCAGC 1 cut(s) 161
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 1 cut(s) 62
BtsCI GGATG 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 9
CfoI GCGC 1 cut(s) 252
Cfr10I RCCGGY 1 cut(s) 206
Csp6I GTAC 1 cut(s) 72
CspAI ACCGGT 1 cut(s) 206
CviJI RGCY 5 cut(s) 14, 62, 152, 229, 242
CviKI_1 RGCY 5 cut(s) 14, 62, 152, 229, 242
CviQI GTAC 1 cut(s) 72
DdeI CTNAG 3 cut(s) 44, 57, 263
DinI GGCGCC 1 cut(s) 251
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
DraI TTTAAA 1 cut(s) 82
Eco147I AGGCCT 1 cut(s) 62
Eco81I CCTNAGG 1 cut(s) 57
EgeI GGCGCC 1 cut(s) 251
EheI GGCGCC 1 cut(s) 251
FbaI TGATCA 1 cut(s) 177
Fnu4HI GCNGC 2 cut(s) 12, 150
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 2 cut(s) 12, 150
GlaI GCGC 1 cut(s) 251
GluI GCNGC 2 cut(s) 12, 150
HaeII RGCGCY 1 cut(s) 253
HaeIII GGCC 1 cut(s) 62
HapII CCGG 1 cut(s) 207
HhaI GCGC 1 cut(s) 252
Hin1I GRCGYC 1 cut(s) 250
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HpaII CCGG 1 cut(s) 207
HphI GGTGA 2 cut(s) 38, 92
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 1 cut(s) 19
Hpy8I GTNNAC 1 cut(s) 72
HpyAV CCTTC 1 cut(s) 283
HpyF3I CTNAG 3 cut(s) 44, 57, 263
Hsp92I GRCGYC 1 cut(s) 250
HspAI GCGC 1 cut(s) 250
KasI GGCGCC 1 cut(s) 249
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 8 cut(s) 31, 44, 116, 135, 154, 204, 220, 293
Lsp1109I GCAGC 1 cut(s) 161
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 5 cut(s) 279, 282, 295, 298, 305
MluCI AATT 1 cut(s) 156
Mly113I GGCGCC 1 cut(s) 250
MnlI CCTC 3 cut(s) 22, 25, 66
MseI TTAA 1 cut(s) 81
MspI CCGG 1 cut(s) 207
NarI GGCGCC 1 cut(s) 250
NdeII GATC 1 cut(s) 177
NlaIV GGNNCC 2 cut(s) 189, 251
NmeAIII GCCGAG 2 cut(s) 125, 164
PceI AGGCCT 1 cut(s) 62
PflFI GACNNNGTC 1 cut(s) 128
PinAI ACCGGT 1 cut(s) 206
PkrI GCNGC 2 cut(s) 13, 151
PluTI GGCGCC 1 cut(s) 253
PspN4I GGNNCC 2 cut(s) 189, 251
PsyI GACNNNGTC 1 cut(s) 128
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 2 cut(s) 12, 150
Sau3AI GATC 1 cut(s) 177
SetI ASST 6 cut(s) 50, 129, 173, 199, 231, 244
SfoI GGCGCC 1 cut(s) 251
Sse9I AATT 1 cut(s) 156
SseBI AGGCCT 1 cut(s) 62
SsiI CCGC 1 cut(s) 11
SspDI GGCGCC 1 cut(s) 249
StuI AGGCCT 1 cut(s) 62
TaqI TCGA 1 cut(s) 203
TasI AATT 1 cut(s) 156
TatI WGTACW 1 cut(s) 71
TauI GCSGC 1 cut(s) 14
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.