Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002831.1

Orthogroup ID

OG0004083

Physical Location & Seq

Genomic Coordinates Forward (+)

53112 .. 53414

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002831.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atggcttccctagaattggacagccttccctttggagaccttacgtactccgcctcgacgaccactctctcacggtacattatggctgaacgcctcgtctcgctcaacaacttggcggccccaatttacgtcgatgggtcgttgatcatcccagcaccaataggttcttcgactggtattaggttcgattgggagcttcagccccaagctgcttggtgccgtgaaaccctaagaagaagaagaagaaaatcccagaagaaaaagaaggaagaaaaagaaatgaaaagaaaagaaaaaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

100

Amino Acids

11.5

Weight (kDa)

9.94

Isoelectric Point (pI)

65.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22580
fragaria_vesca	FvH4_3g29640
malus_domestica	MD03G1136000.v1.1 MD11G1158500.v1.1
prunus_persica	Prupe.6G120300_v2.0.a1
pyrus_communis	pycom03g09190
rosa_chinensis	RchiOBHm_Chr5g0055001
rosa_laevigata	RLG00000034955
rosa_multiflora	Rmu_co8073320.1_g000001 Rmu_sc0000502.1_g000018 Rmu_sc0000631.1_g000027 Rmu_sc0000894.1_g000005 Rmu_sc0001023.1_g000031 Rmu_sc0002590.1_g000009 Rmu_sc0002700.1_g000034 Rmu_sc0002831.1_g000015 Rmu_sc0003351.1_g000004 Rmu_sc0004354.1_g000003 Rmu_sc0007341.1_g000039 Rmu_sc0011695.1_g000003 Rmu_sc0018119.1_g000001 Rmu_ssc0000184.1_g000026 Rmu_ssc0000238.1_g000026
rosa_roxburghii	Rroxscaffold_1G00025510 Rroxscaffold_3G00240200 Rroxscaffold_4G00316460 Rroxscaffold_7G00186340
rosa_rugosa	Rorug05G0289800
rosa_samantha	Rh5AG359900 Rh5BG370900 Rh5CG393200 Rh5DG384700
rosa_wichuraiana	Rw5G033860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	216
AciI	CCGC	2 cut(s)	51, 116
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	2 cut(s)	47, 77
AfiI	CCNNNNNNNGG	1 cut(s)	16
AjuI	GAANNNNNNNTTGG	2 cut(s)	151, 183
AluBI	AGCT	2 cut(s)	196, 209
AluI	AGCT	2 cut(s)	196, 209
Alw26I	GTCTC	2 cut(s)	30, 103
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	118
BanI	GGYRCC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	1 cut(s)	128
BceAI	ACGGC	1 cut(s)	204
BclI	TGATCA	1 cut(s)	144
BcoDI	GTCTC	2 cut(s)	30, 103
BfaI	CTAG	1 cut(s)	11
BisI	GCNGC	2 cut(s)	117, 210
BlsI	GCNGC	2 cut(s)	118, 211
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	2 cut(s)	120, 218
BsaAI	YACGTR	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	178
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseNI	ACTGG	1 cut(s)	178
BseXI	GCAGC	1 cut(s)	196
BseYI	CCCAGC	1 cut(s)	151
BshFI	GGCC	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	216
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	2 cut(s)	30, 103
BsmBI	CGTCTC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	119
Bso31I	GGTCTC	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	144
BspACI	CCGC	2 cut(s)	51, 116
BspANI	GGCC	1 cut(s)	119
BspLI	GGNNCC	2 cut(s)	120, 218
BspT107I	GGYRCC	1 cut(s)	216
BspTNI	GGTCTC	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	178
BssMI	GATC	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	75
BstBAI	YACGTR	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	147
BstKTI	GATC	1 cut(s)	147
BstMAI	GTCTC	2 cut(s)	30, 103
BstMBI	GATC	1 cut(s)	144
BstSNI	TACGTA	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	46, 76
CviJI	RGCY	7 cut(s)	5, 24, 86, 119, 196, 202, 209
CviKI_1	RGCY	7 cut(s)	5, 24, 86, 119, 196, 202, 209
CviQI	GTAC	2 cut(s)	46, 76
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
EciI	GGCGGA	1 cut(s)	40
Eco105I	TACGTA	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	182
Esp3I	CGTCTC	1 cut(s)	103
FaiI	YATR	1 cut(s)	83
FbaI	TGATCA	1 cut(s)	144
Fnu4HI	GCNGC	2 cut(s)	117, 210
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	2 cut(s)	117, 210
FspBI	CTAG	1 cut(s)	11
GluI	GCNGC	2 cut(s)	117, 210
GsaI	CCCAGC	1 cut(s)	155
HaeIII	GGCC	1 cut(s)	119
Hpy99I	CGWCG	2 cut(s)	61, 134
HpyAV	CCTTC	2 cut(s)	35, 259
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4IV	ACGT	2 cut(s)	44, 129
HpyF3I	CTNAG	1 cut(s)	230
HpySE526I	ACGT	2 cut(s)	44, 129
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	3 cut(s)	159, 165, 266
Lsp1109I	GCAGC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	2 cut(s)	44, 129
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MboII	GAAGA	7 cut(s)	159, 246, 249, 252, 255, 268, 281
MluCI	AATT	2 cut(s)	14, 123
MnlI	CCTC	2 cut(s)	64, 104
NdeII	GATC	1 cut(s)	144
NlaIV	GGNNCC	2 cut(s)	120, 218
PkrI	GCNGC	2 cut(s)	118, 211
Ppu21I	YACGTR	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	151
PspN4I	GGNNCC	2 cut(s)	120, 218
PspPI	GGNCC	1 cut(s)	118
RsaI	GTAC	2 cut(s)	47, 77
RsaNI	GTAC	2 cut(s)	46, 76
SatI	GCNGC	2 cut(s)	117, 210
Sau3AI	GATC	1 cut(s)	144
Sau96I	GGNCC	1 cut(s)	118
SetI	ASST	7 cut(s)	42, 47, 132, 166, 185, 198, 211
SnaBI	TACGTA	1 cut(s)	45
Sse9I	AATT	2 cut(s)	14, 123
SsiI	CCGC	2 cut(s)	51, 116
SspMI	CTAG	1 cut(s)	11
TaaI	ACNGT	1 cut(s)	75
TaiI	ACGT	2 cut(s)	47, 132
TaqI	TCGA	4 cut(s)	56, 132, 170, 186
TasI	AATT	2 cut(s)	14, 123
TauI	GCSGC	1 cut(s)	119
TseI	GCWGC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	296
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.