Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004083

Physical Location & Seq

Genomic Coordinates Reverse (-)

22651805 .. 22652747

Gene Structure 943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g29640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGGAGAGTTCAAACACTTGGTGATAGTTAAGTTCAAGCAAGATGTGGTGGTGGAGGAGATTCTCACAGGGTTGGAGAAGTTGGTTGCTGAGATTGATGCTGTTAAGTCGTATGAATGGGGACAGGACTTGGAGAGCCAGGAGATGCTTACACAAGGTTTCACTCATGCCATCTTGATGACTTTTGACAAGAAGGAAGATTACAGTGTGTTTCTCAGCCACCCTAAACATGCAGAATTTTCTGCTACATTTTCTACTGTTCTAGAAAAGATTGTGCTGCTTGATTTCTCAGCTACTCTTGTCAAGCCTGCACCACCACCACCACCACCTCCACCAGCACCAGAAGTTAAAGCTGAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dabb

Protein Analysis

121

Amino Acids

13.41

Weight (kDa)

4.88

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dabb	PF07876	5 - 97	1e-21	Stress responsive A/B Barrel Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22580
fragaria_vesca	FvH4_3g29640
malus_domestica	MD03G1136000.v1.1 MD11G1158500.v1.1
prunus_persica	Prupe.6G120300_v2.0.a1
pyrus_communis	pycom03g09190
rosa_chinensis	RchiOBHm_Chr5g0055001
rosa_laevigata	RLG00000034955
rosa_multiflora	Rmu_co8073320.1_g000001 Rmu_sc0000502.1_g000018 Rmu_sc0000631.1_g000027 Rmu_sc0000894.1_g000005 Rmu_sc0001023.1_g000031 Rmu_sc0002590.1_g000009 Rmu_sc0002700.1_g000034 Rmu_sc0002831.1_g000015 Rmu_sc0003351.1_g000004 Rmu_sc0004354.1_g000003 Rmu_sc0007341.1_g000039 Rmu_sc0011695.1_g000003 Rmu_sc0018119.1_g000001 Rmu_ssc0000184.1_g000026 Rmu_ssc0000238.1_g000026
rosa_roxburghii	Rroxscaffold_1G00025510 Rroxscaffold_3G00240200 Rroxscaffold_4G00316460 Rroxscaffold_7G00186340
rosa_rugosa	Rorug05G0289800
rosa_samantha	Rh5AG359900 Rh5BG370900 Rh5CG393200 Rh5DG384700
rosa_wichuraiana	Rw5G033860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	236
AdeI	CACNNNGTG	1 cut(s)	22
AgsI	TTSAA	2 cut(s)	13, 37
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	2 cut(s)	293, 353
AluI	AGCT	2 cut(s)	293, 353
ApeKI	GCWGC	1 cut(s)	277
ApoI	RAATTY	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	34
BarI	GAAGNNNNNNTAC	2 cut(s)	185, 217
BbvCI	CCTCAGC	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	264
BccI	CCATC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	140
BfaI	CTAG	1 cut(s)	263
BisI	GCNGC	1 cut(s)	278
BlsI	GCNGC	1 cut(s)	279
Bme1390I	CCNGG	1 cut(s)	140
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	2 cut(s)	88, 135
Bpu10I	CCTNAGC	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	140
BseMII	CTCAG	4 cut(s)	81, 229, 303, 345
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	264
BsgI	GTGCAG	1 cut(s)	294
BslFI	GGGAC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	135
BspCNI	CTCAG	4 cut(s)	82, 228, 302, 346
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	2 cut(s)	206, 259
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	4 cut(s)	90, 215, 289, 354
BstNI	CCWGG	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	138
BstV1I	GCAGC	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	309
CviAII	CATG	2 cut(s)	167, 230
CviJI	RGCY	5 cut(s)	138, 219, 293, 307, 353
CviKI_1	RGCY	5 cut(s)	138, 219, 293, 307, 353
DdeI	CTNAG	4 cut(s)	90, 215, 289, 354
DraIII	CACNNNGTG	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	138
FaeI	CATG	2 cut(s)	170, 233
FaiI	YATR	3 cut(s)	114, 168, 231
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	2 cut(s)	166, 229
Fnu4HI	GCNGC	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	278
FspBI	CTAG	1 cut(s)	263
GluI	GCNGC	1 cut(s)	278
Hin1II	CATG	2 cut(s)	170, 233
HinfI	GANTC	1 cut(s)	61
HphI	GGTGA	1 cut(s)	34
Hpy188III	TCNNGA	2 cut(s)	175, 263
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	2 cut(s)	206, 259
HpyCH4V	TGCA	2 cut(s)	233, 311
HpyF3I	CTNAG	4 cut(s)	90, 215, 289, 354
Hsp92II	CATG	2 cut(s)	170, 233
LpnPI	CCDG	7 cut(s)	54, 110, 125, 152, 321, 348, 354
Lsp1109I	GCAGC	1 cut(s)	264
LweI	GCATC	2 cut(s)	88, 135
MaeI	CTAG	1 cut(s)	263
MboII	GAAGA	1 cut(s)	209
MluCI	AATT	1 cut(s)	236
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	3 cut(s)	49, 339, 349
MseI	TTAA	4 cut(s)	30, 105, 348, 361
MslI	CAYNNNNRTG	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	140
NlaIII	CATG	2 cut(s)	170, 233
NspI	RCATGY	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	61
PkrI	GCNGC	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	4 cut(s)	30, 105, 348, 361
SatI	GCNGC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	140
SetI	ASST	5 cut(s)	160, 295, 331, 355, 360
SfaNI	GCATC	2 cut(s)	88, 135
SmiMI	CAYNNNNRTG	1 cut(s)	176
Sse9I	AATT	1 cut(s)	236
SspMI	CTAG	1 cut(s)	263
StyD4I	CCNGG	1 cut(s)	138
TaaI	ACNGT	2 cut(s)	206, 259
TasI	AATT	1 cut(s)	236
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	4 cut(s)	30, 105, 348, 361
Tru9I	TTAA	4 cut(s)	30, 105, 348, 361
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	1 cut(s)	277
TspDTI	ATGAA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	211
XapI	RAATTY	1 cut(s)	236
XbaI	TCTAGA	1 cut(s)	262
XceI	RCATGY	1 cut(s)	233
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.