MD11G1158500.v1.1

Stress responsive A/B Barrel Domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0004083
Physical Location & Seq
Reverse (-)
15402139 .. 15403405
1267 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1158500.v1.1.491

Sequence Viewer

Length: 396 bp
ATGGGTAGTACAGTAGAACTGGAAAATAATATTATGGGGGAGTTCAAGCACTTGGTGATTGTTAAGTTCAAGGAAAATGTGTTGATGGAGGAGATTCTGAAAGATATGGAGAAAATGGTTGCTGAGATTGATGCTATTAAGTCCTTTGAATGGGGACAGGACTTGGAAAGCCTAGAGATGCTTAGGCAAGGGTTTACCCATGCCTTCTTGATGACATTTAAAAATAAAGAAGGTTACAGTGCGTTTCTCGGCCACCCTAAACATCAAGAATTTTCGGCTACATTTTCAACAGCTATAGAAAAGATTGTGCTGCTTGATTTCCCGGCTACCCTTGTCAAGCCACCACCCAAGGCACCAGCAGAGGAACCATCAGCTGCCCAGAATGATCAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dabb

Protein Analysis

132

Amino Acids

14.84

Weight (kDa)

5.08

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dabb PF07876 16 - 108 2.6e-23 Stress responsive A/B Barrel Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 352
AcoI YGGCCR 1 cut(s) 250
AcsI RAATTY 1 cut(s) 269
AdeI CACNNNGTG 1 cut(s) 55
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 1 cut(s) 150
AgsI TTSAA 4 cut(s) 46, 70, 149, 288
AluBI AGCT 2 cut(s) 293, 374
AluI AGCT 2 cut(s) 293, 374
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 2 cut(s) 310, 374
ApoI RAATTY 1 cut(s) 269
AsuC2I CCSGG 1 cut(s) 323
AsuHPI GGTGA 1 cut(s) 67
BanI GGYRCC 1 cut(s) 352
BbvI GCAGC 2 cut(s) 297, 361
BccI CCATC 2 cut(s) 79, 376
BclI TGATCA 1 cut(s) 385
BcnI CCSGG 1 cut(s) 323
BfaI CTAG 1 cut(s) 173
BfmI CTRYAG 1 cut(s) 294
BisI GCNGC 2 cut(s) 311, 375
BlsI GCNGC 2 cut(s) 312, 376
Bme1390I CCNGG 1 cut(s) 323
BmiI GGNNCC 2 cut(s) 354, 366
BmrFI CCNGG 1 cut(s) 323
BmsI GCATC 2 cut(s) 121, 168
Bpu10I CCTNAGC 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 348
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 348
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 24
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 2 cut(s) 297, 361
BshFI GGCC 1 cut(s) 252
BshNI GGYRCC 1 cut(s) 352
BsiSI CCGG 1 cut(s) 323
BslFI GGGAC 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 168
BsnI GGCC 1 cut(s) 252
Bsp143I GATC 1 cut(s) 385
BspANI GGCC 1 cut(s) 252
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 2 cut(s) 354, 366
BspT107I GGYRCC 1 cut(s) 352
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 1 cut(s) 385
BssT1I CCWWGG 1 cut(s) 348
Bst4CI ACNGT 2 cut(s) 13, 239
BstDEI CTNAG 2 cut(s) 123, 182
BstKTI GATC 1 cut(s) 388
BstMBI GATC 1 cut(s) 385
BstSCI CCNGG 1 cut(s) 321
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 2 cut(s) 297, 361
BsuRI GGCC 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 244
Csp6I GTAC 1 cut(s) 9
CviAII CATG 1 cut(s) 200
CviJI RGCY 7 cut(s) 171, 252, 278, 293, 326, 340, 374
CviKI_1 RGCY 7 cut(s) 171, 252, 278, 293, 326, 340, 374
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 2 cut(s) 123, 182
DpnI GATC 1 cut(s) 387
DpnII GATC 1 cut(s) 385
DraI TTTAAA 1 cut(s) 220
DraIII CACNNNGTG 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 1 cut(s) 203
FaiI YATR 4 cut(s) 35, 107, 201, 296
FaqI GGGAC 1 cut(s) 168
FatI CATG 1 cut(s) 199
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 2 cut(s) 311, 375
Fsp4HI GCNGC 2 cut(s) 311, 375
FspBI CTAG 1 cut(s) 173
GluI GCNGC 2 cut(s) 311, 375
HaeIII GGCC 1 cut(s) 252
HapII CCGG 1 cut(s) 323
Hin1II CATG 1 cut(s) 203
HinfI GANTC 1 cut(s) 94
HpaII CCGG 1 cut(s) 323
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 2 cut(s) 99, 390
Hpy188III TCNNGA 2 cut(s) 208, 266
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 2 cut(s) 214, 224
HpyCH4III ACNGT 2 cut(s) 13, 239
HpyF3I CTNAG 2 cut(s) 123, 182
Hsp92II CATG 1 cut(s) 203
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 1 cut(s) 385
LpnPI CCDG 5 cut(s) 5, 143, 336, 369, 392
Lsp1109I GCAGC 2 cut(s) 297, 361
LweI GCATC 2 cut(s) 121, 168
MaeI CTAG 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 233
MalI GATC 1 cut(s) 387
MboI GATC 1 cut(s) 385
MluCI AATT 1 cut(s) 269
MnlI CCTC 2 cut(s) 82, 355
MseI TTAA 3 cut(s) 63, 138, 219
MspA1I CMGCKG 1 cut(s) 374
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 323
NciI CCSGG 1 cut(s) 323
NdeII GATC 1 cut(s) 385
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 2 cut(s) 354, 366
NmeAIII GCCGAG 1 cut(s) 228
PfeI GAWTC 1 cut(s) 94
PkrI GCNGC 2 cut(s) 312, 376
PspN4I GGNNCC 2 cut(s) 354, 366
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
SaqAI TTAA 3 cut(s) 63, 138, 219
SatI GCNGC 2 cut(s) 311, 375
Sau3AI GATC 1 cut(s) 385
ScrFI CCNGG 1 cut(s) 323
SetI ASST 3 cut(s) 235, 295, 376
SfaNI GCATC 2 cut(s) 121, 168
SfcI CTRYAG 1 cut(s) 294
Sse9I AATT 1 cut(s) 269
SspI AATATT 1 cut(s) 31
SspMI CTAG 1 cut(s) 173
StyD4I CCNGG 1 cut(s) 321
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 2 cut(s) 13, 239
TasI AATT 1 cut(s) 269
TatI WGTACW 1 cut(s) 8
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 3 cut(s) 63, 138, 219
Tru9I TTAA 3 cut(s) 63, 138, 219
TscAI CASTG 1 cut(s) 244
TseI GCWGC 2 cut(s) 310, 374
TspRI CASTG 1 cut(s) 244
XapI RAATTY 1 cut(s) 269
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.