Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001023.1

Orthogroup ID

OG0004083

Physical Location & Seq

Genomic Coordinates Forward (+)

147753 .. 148067

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001023.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atggcttccctagaaatggacagccttcccttcggagaccgtacgtactccgcctcgatgaccactctctcacggtaccttccggctaaacgcctcttctcgctcaacaactcggtggccccaatttacgccgacgagtcgttgatcatcccagcaccagcaggttctacgaccggtatcgggttcgattgggagcttcagccccaagctgcttggtgttgcgaaaccctaagaagaagaagaagaaaatcccagaagaagaagaagaagaagaagaaggaagaaaaagaaatgaaaagaaaaggaaaaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.91

Weight (kDa)

10.1

Isoelectric Point (pI)

70.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22580
fragaria_vesca	FvH4_3g29640
malus_domestica	MD03G1136000.v1.1 MD11G1158500.v1.1
prunus_persica	Prupe.6G120300_v2.0.a1
pyrus_communis	pycom03g09190
rosa_chinensis	RchiOBHm_Chr5g0055001
rosa_laevigata	RLG00000034955
rosa_multiflora	Rmu_co8073320.1_g000001 Rmu_sc0000502.1_g000018 Rmu_sc0000631.1_g000027 Rmu_sc0000894.1_g000005 Rmu_sc0001023.1_g000031 Rmu_sc0002590.1_g000009 Rmu_sc0002700.1_g000034 Rmu_sc0002831.1_g000015 Rmu_sc0003351.1_g000004 Rmu_sc0004354.1_g000003 Rmu_sc0007341.1_g000039 Rmu_sc0011695.1_g000003 Rmu_sc0018119.1_g000001 Rmu_ssc0000184.1_g000026 Rmu_ssc0000238.1_g000026
rosa_roxburghii	Rroxscaffold_1G00025510 Rroxscaffold_3G00240200 Rroxscaffold_4G00316460 Rroxscaffold_7G00186340
rosa_rugosa	Rorug05G0289800
rosa_samantha	Rh5AG359900 Rh5BG370900 Rh5CG393200 Rh5DG384700
rosa_wichuraiana	Rw5G033860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	152
Acc65I	GGTACC	1 cut(s)	75
AccB1I	GGYRCC	1 cut(s)	75
AciI	CCGC	1 cut(s)	51
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	3 cut(s)	43, 47, 77
AfiI	CCNNNNNNNGG	2 cut(s)	16, 180
AgeI	ACCGGT	1 cut(s)	173
AluBI	AGCT	2 cut(s)	196, 209
AluI	AGCT	2 cut(s)	196, 209
Alw26I	GTCTC	1 cut(s)	30
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	1 cut(s)	209
AsiGI	ACCGGT	1 cut(s)	173
Asp718I	GGTACC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	118
BanI	GGYRCC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	196
BclI	TGATCA	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	152
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	2 cut(s)	77, 120
BsaAI	YACGTR	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	30
BsaWI	WCCGGW	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 180
Bse118I	RCCGGY	1 cut(s)	173
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	2 cut(s)	16, 180
BseXI	GCAGC	1 cut(s)	196
BseYI	CCCAGC	1 cut(s)	151
Bsh1285I	CGRYCG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	75
BshTI	ACCGGT	1 cut(s)	173
BsiEI	CGRYCG	1 cut(s)	174
BsiSI	CCGG	2 cut(s)	83, 174
BsiWI	CGTACG	1 cut(s)	41
BslI	CCNNNNNNNGG	2 cut(s)	16, 180
BsmAI	GTCTC	1 cut(s)	30
BsnI	GGCC	1 cut(s)	119
Bso31I	GGTCTC	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	144
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	1 cut(s)	119
BspLI	GGNNCC	2 cut(s)	77, 120
BspMI	ACCTGC	1 cut(s)	152
BspT107I	GGYRCC	1 cut(s)	75
BspTNI	GGTCTC	1 cut(s)	30
BsrFI	RCCGGY	1 cut(s)	173
BssAI	RCCGGY	1 cut(s)	173
BssMI	GATC	1 cut(s)	144
Bst4CI	ACNGT	2 cut(s)	41, 75
Bst6I	CTCTTC	1 cut(s)	101
BstBAI	YACGTR	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	147
BstKTI	GATC	1 cut(s)	147
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	1 cut(s)	144
BstMCI	CGRYCG	1 cut(s)	174
BstSNI	TACGTA	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	147
BveI	ACCTGC	1 cut(s)	152
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	118
Csp6I	GTAC	3 cut(s)	42, 46, 76
CspAI	ACCGGT	1 cut(s)	173
CviJI	RGCY	7 cut(s)	5, 24, 86, 119, 196, 202, 209
CviKI_1	RGCY	7 cut(s)	5, 24, 86, 119, 196, 202, 209
CviQI	GTAC	3 cut(s)	42, 46, 76
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
EciI	GGCGGA	1 cut(s)	40
Eco105I	TACGTA	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	182
FbaI	TGATCA	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	1 cut(s)	11
GluI	GCNGC	1 cut(s)	210
GsaI	CCCAGC	1 cut(s)	155
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	2 cut(s)	83, 174
HinfI	GANTC	1 cut(s)	137
HpaII	CCGG	2 cut(s)	83, 174
Hpy188I	TCNGA	1 cut(s)	35
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	4 cut(s)	35, 40, 89, 271
HpyCH4III	ACNGT	2 cut(s)	41, 75
HpyCH4IV	ACGT	1 cut(s)	44
HpyF3I	CTNAG	1 cut(s)	230
HpySE526I	ACGT	1 cut(s)	44
KpnI	GGTACC	1 cut(s)	79
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	6 cut(s)	96, 147, 165, 171, 187, 266
Lsp1109I	GCAGC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	44
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MluCI	AATT	1 cut(s)	123
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	2 cut(s)	64, 104
MspI	CCGG	2 cut(s)	83, 174
NdeII	GATC	1 cut(s)	144
NlaIV	GGNNCC	2 cut(s)	77, 120
Pfl23II	CGTACG	1 cut(s)	41
PinAI	ACCGGT	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	211
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
Ppu21I	YACGTR	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	151
PspLI	CGTACG	1 cut(s)	41
PspN4I	GGNNCC	2 cut(s)	77, 120
PspPI	GGNCC	1 cut(s)	118
RsaI	GTAC	3 cut(s)	43, 47, 77
RsaNI	GTAC	3 cut(s)	42, 46, 76
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	1 cut(s)	144
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	1 cut(s)	146
SetI	ASST	5 cut(s)	47, 81, 166, 198, 211
SnaBI	TACGTA	1 cut(s)	45
Sse9I	AATT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	51
SspMI	CTAG	1 cut(s)	11
TaaI	ACNGT	2 cut(s)	41, 75
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	2 cut(s)	56, 186
TasI	AATT	1 cut(s)	123
TseI	GCWGC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	308
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.