Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004354.1

Orthogroup ID

OG0004083

Physical Location & Seq

Genomic Coordinates Forward (+)

9129 .. 10898

Gene Structure 1770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004354.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atggcttccctagaactagacatccttcctttcggagaccgtacgtactccgcctcgacgaccactctctcacggttccttccggctgaacgcctagtctcgctcaacaactcggcggccccaatttacgccgacgggtcgttgatcatcccagcaccagcaggttctttgactggtatcgggttagattgggagcttcagccccaagctgcttgtgccaagatgggagagttcaaacacttggtgatagttaagttcaaggcagatgtggtggtggaggagatcctcacagggctggagaagttggttgcggagattgatgctgttaagtcctatgaatggggacaggacttggagagccaggagatgctcacacaaggtttcactcatgccatcttgatgacattcgacaagaaggacgattacactctgtttctcagccaccctaaacatgcagacttttctggtacattttcgactgttatagaaaagattgtgctgcttgatttcccagctactcttgtcaagcctccaccaccaccacctccaccagcagcagaagttaaagaagaggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dabb

Protein Analysis

192

Amino Acids

20.94

Weight (kDa)

4.66

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22580
fragaria_vesca	FvH4_3g29640
malus_domestica	MD03G1136000.v1.1 MD11G1158500.v1.1
prunus_persica	Prupe.6G120300_v2.0.a1
pyrus_communis	pycom03g09190
rosa_chinensis	RchiOBHm_Chr5g0055001
rosa_laevigata	RLG00000034955
rosa_multiflora	Rmu_co8073320.1_g000001 Rmu_sc0000502.1_g000018 Rmu_sc0000631.1_g000027 Rmu_sc0000894.1_g000005 Rmu_sc0001023.1_g000031 Rmu_sc0002590.1_g000009 Rmu_sc0002700.1_g000034 Rmu_sc0002831.1_g000015 Rmu_sc0003351.1_g000004 Rmu_sc0004354.1_g000003 Rmu_sc0007341.1_g000039 Rmu_sc0011695.1_g000003 Rmu_sc0018119.1_g000001 Rmu_ssc0000184.1_g000026 Rmu_ssc0000238.1_g000026
rosa_roxburghii	Rroxscaffold_1G00025510 Rroxscaffold_3G00240200 Rroxscaffold_4G00316460 Rroxscaffold_7G00186340
rosa_rugosa	Rorug05G0289800
rosa_samantha	Rh5AG359900 Rh5BG370900 Rh5CG393200 Rh5DG384700
rosa_wichuraiana	Rw5G033860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	152
AciI	CCGC	3 cut(s)	51, 116, 311
AclWI	GGATC	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	182
AdeI	CACNNNGTG	1 cut(s)	244
AfaI	GTAC	3 cut(s)	43, 47, 469
AfiI	CCNNNNNNNGG	1 cut(s)	339
AgsI	TTSAA	2 cut(s)	235, 259
AjnI	CCWGG	1 cut(s)	360
AloI	GAACNNNNNNTCC	1 cut(s)	38
AluBI	AGCT	3 cut(s)	196, 209, 515
AluI	AGCT	3 cut(s)	196, 209, 515
Alw26I	GTCTC	2 cut(s)	30, 103
AlwI	GGATC	1 cut(s)	277
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	3 cut(s)	209, 499, 554
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	256
BarI	GAAGNNNNNNTAC	2 cut(s)	407, 439
BbvI	GCAGC	3 cut(s)	196, 486, 566
BccI	CCATC	2 cut(s)	217, 401
BciT130I	CCWGG	1 cut(s)	362
BclI	TGATCA	1 cut(s)	144
BcoDI	GTCTC	2 cut(s)	30, 103
BfaI	CTAG	3 cut(s)	11, 17, 95
BfuAI	ACCTGC	1 cut(s)	152
BisI	GCNGC	4 cut(s)	117, 210, 500, 555
BlsI	GCNGC	4 cut(s)	118, 211, 501, 556
Bme1390I	CCNGG	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	2 cut(s)	77, 120
BmrFI	CCNGG	1 cut(s)	362
BmsI	GCATC	2 cut(s)	310, 357
BpmI	CTGGAG	1 cut(s)	317
BsaAI	YACGTR	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	339
Bse1I	ACTGG	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	362
BseGI	GGATG	2 cut(s)	21, 147
BseLI	CCNNNNNNNGG	1 cut(s)	339
BseMII	CTCAG	1 cut(s)	451
BseNI	ACTGG	1 cut(s)	178
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	3 cut(s)	196, 486, 566
BseYI	CCCAGC	2 cut(s)	151, 511
BshFI	GGCC	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	83
BsiWI	CGTACG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	1 cut(s)	339
BsmAI	GTCTC	2 cut(s)	30, 103
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	1 cut(s)	119
Bso31I	GGTCTC	1 cut(s)	30
Bsp143I	GATC	2 cut(s)	144, 282
BspACI	CCGC	3 cut(s)	51, 116, 311
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	450
BspLI	GGNNCC	2 cut(s)	77, 120
BspMI	ACCTGC	1 cut(s)	152
BspPI	GGATC	1 cut(s)	277
BspTNI	GGTCTC	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	178
BssMI	GATC	2 cut(s)	144, 282
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	3 cut(s)	41, 75, 481
Bst6I	CTCTTC	1 cut(s)	564
BstBAI	YACGTR	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	437
BstF5I	GGATG	2 cut(s)	21, 147
BstKTI	GATC	2 cut(s)	147, 285
BstMAI	GTCTC	2 cut(s)	30, 103
BstMBI	GATC	2 cut(s)	144, 282
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	1 cut(s)	362
BstNSI	RCATGY	1 cut(s)	455
BstSCI	CCNGG	1 cut(s)	360
BstSNI	TACGTA	1 cut(s)	45
BstV1I	GCAGC	3 cut(s)	196, 486, 566
BstX2I	RGATCY	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	119
BtsCI	GGATG	2 cut(s)	21, 147
BveI	ACCTGC	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	118
Csp6I	GTAC	3 cut(s)	42, 46, 468
CviAII	CATG	2 cut(s)	389, 452
CviQI	GTAC	3 cut(s)	42, 46, 468
DdeI	CTNAG	1 cut(s)	437
DpnI	GATC	2 cut(s)	146, 284
DpnII	GATC	2 cut(s)	144, 282
DraIII	CACNNNGTG	1 cut(s)	244
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
EciI	GGCGGA	1 cut(s)	40
Eco105I	TACGTA	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	360
FaeI	CATG	2 cut(s)	392, 455
FaiI	YATR	4 cut(s)	336, 390, 453, 485
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	2 cut(s)	388, 451
FbaI	TGATCA	1 cut(s)	144
Fnu4HI	GCNGC	4 cut(s)	117, 210, 500, 555
FokI	GGATG	2 cut(s)	8, 134
Fsp4HI	GCNGC	4 cut(s)	117, 210, 500, 555
FspBI	CTAG	3 cut(s)	11, 17, 95
GluI	GCNGC	4 cut(s)	117, 210, 500, 555
GsaI	CCCAGC	2 cut(s)	155, 515
GsuI	CTGGAG	1 cut(s)	317
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	1 cut(s)	83
Hin1II	CATG	2 cut(s)	392, 455
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	1 cut(s)	256
Hpy188I	TCNGA	1 cut(s)	35
Hpy188III	TCNNGA	1 cut(s)	397
Hpy99I	CGWCG	2 cut(s)	61, 137
HpyAV	CCTTC	3 cut(s)	35, 89, 409
HpyCH4III	ACNGT	3 cut(s)	41, 75, 481
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	1 cut(s)	455
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	1 cut(s)	437
HpySE526I	ACGT	1 cut(s)	44
Hsp92II	CATG	2 cut(s)	392, 455
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	144, 282
LmnI	GCTCC	1 cut(s)	193
Lsp1109I	GCAGC	3 cut(s)	196, 486, 566
LweI	GCATC	2 cut(s)	310, 357
MaeI	CTAG	3 cut(s)	11, 17, 95
MaeII	ACGT	1 cut(s)	44
MalI	GATC	2 cut(s)	146, 284
MboI	GATC	2 cut(s)	144, 282
MflI	RGATCY	1 cut(s)	282
MluCI	AATT	1 cut(s)	123
MnlI	CCTC	6 cut(s)	64, 271, 296, 540, 555, 565
MseI	TTAA	4 cut(s)	252, 327, 564, 577
MslI	CAYNNNNRTG	1 cut(s)	398
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	1 cut(s)	215
NdeII	GATC	2 cut(s)	144, 282
NlaIII	CATG	2 cut(s)	392, 455
NlaIV	GGNNCC	2 cut(s)	77, 120
NmeAIII	GCCGAG	1 cut(s)	92
NspI	RCATGY	1 cut(s)	455
Pfl23II	CGTACG	1 cut(s)	41
PkrI	GCNGC	4 cut(s)	118, 211, 501, 556
Ppu21I	YACGTR	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	360
PspFI	CCCAGC	2 cut(s)	151, 511
PspGI	CCWGG	1 cut(s)	360
PspLI	CGTACG	1 cut(s)	41
PspN4I	GGNNCC	2 cut(s)	77, 120
PspPI	GGNCC	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	282
RsaI	GTAC	3 cut(s)	43, 47, 469
RsaNI	GTAC	3 cut(s)	42, 46, 468
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	4 cut(s)	252, 327, 564, 577
SatI	GCNGC	4 cut(s)	117, 210, 500, 555
Sau3AI	GATC	2 cut(s)	144, 282
Sau96I	GGNCC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	362
SetI	ASST	8 cut(s)	47, 166, 198, 211, 382, 517, 547, 576
SfaNI	GCATC	2 cut(s)	310, 357
SmiMI	CAYNNNNRTG	1 cut(s)	398
SnaBI	TACGTA	1 cut(s)	45
Sse9I	AATT	1 cut(s)	123
SsiI	CCGC	3 cut(s)	51, 116, 311
SspMI	CTAG	3 cut(s)	11, 17, 95
StyD4I	CCNGG	1 cut(s)	360
TaaI	ACNGT	3 cut(s)	41, 75, 481
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	3 cut(s)	56, 408, 476
TasI	AATT	1 cut(s)	123
TauI	GCSGC	1 cut(s)	119
Tru1I	TTAA	4 cut(s)	252, 327, 564, 577
Tru9I	TTAA	4 cut(s)	252, 327, 564, 577
TseI	GCWGC	3 cut(s)	209, 499, 554
TspDTI	ATGAA	1 cut(s)	351
XceI	RCATGY	1 cut(s)	455
XspI	CTAG	3 cut(s)	11, 17, 95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.