Rroxscaffold_1G00025510

Stress responsive A/B Barrel Domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004083
Physical Location & Seq
Forward (+)
32005268 .. 32006315
1048 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00025510.1

Sequence Viewer

Length: 363 bp
ATGGGAGAGTTCAAGCACTTGGTGATAGTTAAGTTCAAGGCAGATGTGGTGGTGGAGGAGATCCTCACAGGGCTGGAGAAGTTGGTTGCCGAGATTGATGCTGTTAAGTCCTATGAATGGGGACAGGACTTGGAGAGCCAGGAGATGCTTACACAAGGTTTCACTCATGCCATCTTGATGACATTCGACAAGAAGGAAGATTACACTCTGTTTCTCAGCCACCCTAAACATGCAGAATTTTCTGGTACATTTTCGACTGTTATAGAAAAGATTGTGCTGCTTGATTTCCCAGCTACTCTTGTCAAGCCTCCACCACCACCACCACCACCTCCACCAGCAGCAGAAGTTAAAGCAGAGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dabb

Protein Analysis

120

Amino Acids

13.37

Weight (kDa)

4.88

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dabb PF07876 5 - 97 4.7e-21 Stress responsive A/B Barrel Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 55
AcsI RAATTY 1 cut(s) 236
AdeI CACNNNGTG 1 cut(s) 22
AfaI GTAC 1 cut(s) 247
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 2 cut(s) 13, 37
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
AlwI GGATC 1 cut(s) 55
ApeKI GCWGC 2 cut(s) 277, 338
ApoI RAATTY 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 34
BarI GAAGNNNNNNTAC 2 cut(s) 185, 217
BbvI GCAGC 2 cut(s) 264, 350
BccI CCATC 1 cut(s) 179
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 1 cut(s) 140
BisI GCNGC 2 cut(s) 278, 339
BlsI GCNGC 2 cut(s) 279, 340
Bme1390I CCNGG 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 140
BmsI GCATC 2 cut(s) 88, 135
BpmI CTGGAG 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 117
BseBI CCWGG 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 229
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 264, 350
BseYI CCCAGC 1 cut(s) 289
BslFI GGGAC 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 135
Bsp143I GATC 1 cut(s) 60
BspCNI CTCAG 1 cut(s) 228
BspPI GGATC 1 cut(s) 55
BssMI GATC 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 1 cut(s) 259
BstDEI CTNAG 1 cut(s) 215
BstKTI GATC 1 cut(s) 63
BstMBI GATC 1 cut(s) 60
BstNI CCWGG 1 cut(s) 140
BstNSI RCATGY 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 264, 350
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
Csp6I GTAC 1 cut(s) 246
CviAII CATG 2 cut(s) 167, 230
CviJI RGCY 5 cut(s) 73, 138, 219, 293, 307
CviKI_1 RGCY 5 cut(s) 73, 138, 219, 293, 307
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 1 cut(s) 215
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
DraIII CACNNNGTG 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 138
FaeI CATG 2 cut(s) 170, 233
FaiI YATR 4 cut(s) 114, 168, 231, 263
FaqI GGGAC 1 cut(s) 135
FatI CATG 2 cut(s) 166, 229
Fnu4HI GCNGC 2 cut(s) 278, 339
Fsp4HI GCNGC 2 cut(s) 278, 339
GluI GCNGC 2 cut(s) 278, 339
GsaI CCCAGC 1 cut(s) 293
GsuI CTGGAG 1 cut(s) 95
Hin1II CATG 2 cut(s) 170, 233
HphI GGTGA 1 cut(s) 34
Hpy188III TCNNGA 1 cut(s) 175
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4V TGCA 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 215
Hsp92II CATG 2 cut(s) 170, 233
Kzo9I GATC 1 cut(s) 60
LpnPI CCDG 8 cut(s) 54, 59, 110, 125, 152, 228, 303, 348
Lsp1109I GCAGC 2 cut(s) 264, 350
LweI GCATC 2 cut(s) 88, 135
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 1 cut(s) 209
MflI RGATCY 1 cut(s) 60
MluCI AATT 1 cut(s) 236
MnlI CCTC 5 cut(s) 49, 74, 318, 339, 349
MseI TTAA 4 cut(s) 30, 105, 348, 361
MslI CAYNNNNRTG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 140
NdeII GATC 1 cut(s) 60
NlaIII CATG 2 cut(s) 170, 233
NmeAIII GCCGAG 1 cut(s) 115
NspI RCATGY 1 cut(s) 233
PkrI GCNGC 2 cut(s) 279, 340
Psp6I CCWGG 1 cut(s) 138
PspFI CCCAGC 1 cut(s) 289
PspGI CCWGG 1 cut(s) 138
PsuI RGATCY 1 cut(s) 60
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 176
SaqAI TTAA 4 cut(s) 30, 105, 348, 361
SatI GCNGC 2 cut(s) 278, 339
Sau3AI GATC 1 cut(s) 60
ScrFI CCNGG 1 cut(s) 140
SetI ASST 4 cut(s) 160, 295, 331, 360
SfaNI GCATC 2 cut(s) 88, 135
SmiMI CAYNNNNRTG 1 cut(s) 176
Sse9I AATT 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 259
TaqI TCGA 2 cut(s) 186, 254
TasI AATT 1 cut(s) 236
Tru1I TTAA 4 cut(s) 30, 105, 348, 361
Tru9I TTAA 4 cut(s) 30, 105, 348, 361
TseI GCWGC 2 cut(s) 277, 338
TspDTI ATGAA 1 cut(s) 129
XapI RAATTY 1 cut(s) 236
XceI RCATGY 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.