Rroxscaffold_3G00240200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004083
Physical Location & Seq
Forward (+)
31854314 .. 31858167
3854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00240200.1

Sequence Viewer

Length: 573 bp
ATGGCCACTCTCTCGGGGTACCTTACGGCTGACCGCCTCGTCTCGCTCAACAACTCGGCGGCCCCAATTTACTCCAACGGGTCGTTGATCCTCTCGGCACCAGCAGGTTCTTCGACCGGTTTGATTGGGAGCTTCAGCCCCTTGGCGCCGCGAAACCCTAAGAAGAAGAAGAAGAAGAAGAAGATCCCAAAAGAAGAAGAAGAAGAGAAGAAGAAGGAAGAAAAAGAAATGAAAAGAAAAGGAATAAAACGAATTAACAAAAAAAAAGGGGGCAACATGGTCCTTGGCAAAAACTGTACCTTCGACGTCGATTTGGTGGCCGGAGATGGTCGGAATCGCCGAAATCGACAAAACCTCTCGTTGGGCTACGGTAATCCTTGCGGCTCACCCCGAGCTCCTCCGGCCGAGCCACCGCAAAACACTACCACAAGCGTGACAAGGAGGAGGAGGCGAGCTTGCCCGGTGCCGGATTCCTTTGTGGGTCGGGCCGAGAAGGGAGAAATCGAGAGGAAGAAGAAACCAGATCGAAGAGGAAGAAAGGGTCGGGGGGGAAGGAGAGAGAAAAGCCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

20.98

Weight (kDa)

10.77

Isoelectric Point (pI)

65.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 38
AatII GACGTC 1 cut(s) 309
Acc36I ACCTGC 1 cut(s) 95
Acc65I GGTACC 1 cut(s) 18
AccB1I GGYRCC 4 cut(s) 18, 97, 145, 463
AccII CGCG 1 cut(s) 151
AciI CCGC 5 cut(s) 34, 59, 149, 381, 413
AclWI GGATC 2 cut(s) 82, 178
AcoI YGGCCR 3 cut(s) 3, 318, 402
AcuI CTGAAG 1 cut(s) 118
AcyI GRCGYC 2 cut(s) 146, 306
AfaI GTAC 2 cut(s) 20, 298
AfiI CCNNNNNNNGG 2 cut(s) 361, 466
AgeI ACCGGT 1 cut(s) 116
AleI CACNNNNGTG 1 cut(s) 431
AluBI AGCT 3 cut(s) 132, 395, 455
AluI AGCT 3 cut(s) 132, 395, 455
Alw21I GWGCWC 1 cut(s) 397
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 2 cut(s) 82, 178
Ama87I CYCGRG 2 cut(s) 13, 390
AoxI GGCC 5 cut(s) 3, 60, 318, 402, 486
AsiGI ACCGGT 1 cut(s) 116
Asp718I GGTACC 1 cut(s) 18
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 3 cut(s) 61, 280, 486
AsuC2I CCSGG 1 cut(s) 461
AsuHPI GGTGA 1 cut(s) 378
AvaI CYCGRG 2 cut(s) 13, 390
AvaII GGWCC 1 cut(s) 280
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 4 cut(s) 18, 97, 145, 463
BanII GRGCYC 1 cut(s) 397
Bbv12I GWGCWC 1 cut(s) 397
BccI CCATC 1 cut(s) 320
BceAI ACGGC 1 cut(s) 42
BcgI CGANNNNNNTGC 2 cut(s) 93, 127
BcnI CCSGG 1 cut(s) 461
BcoDI GTCTC 1 cut(s) 46
BfoI RGCGCY 1 cut(s) 149
BfuAI ACCTGC 1 cut(s) 95
BisI GCNGC 3 cut(s) 60, 149, 382
BlsI GCNGC 3 cut(s) 61, 150, 383
Bme1390I CCNGG 1 cut(s) 461
Bme18I GGWCC 1 cut(s) 280
BmeT110I CYCGRG 2 cut(s) 13, 390
BmgT120I GGNCC 3 cut(s) 61, 280, 486
BmiI GGNNCC 5 cut(s) 20, 63, 99, 147, 465
BmrFI CCNGG 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 461
BsaHI GRCGYC 2 cut(s) 146, 306
BsaJI CCNNGG 2 cut(s) 141, 283
BsaWI WCCGGW 1 cut(s) 116
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 466
Bse118I RCCGGY 2 cut(s) 116, 567
BseDI CCNNGG 2 cut(s) 141, 283
BseLI CCNNNNNNNGG 2 cut(s) 361, 466
BseRI GAGGAG 3 cut(s) 387, 457, 460
BseX3I CGGCCG 1 cut(s) 402
Bsh1236I CGCG 1 cut(s) 151
Bsh1285I CGRYCG 2 cut(s) 117, 405
BshFI GGCC 5 cut(s) 5, 62, 320, 404, 488
BshNI GGYRCC 4 cut(s) 18, 97, 145, 463
BshTI ACCGGT 1 cut(s) 116
BsiEI CGRYCG 2 cut(s) 117, 405
BsiHKAI GWGCWC 1 cut(s) 397
BsiHKCI CYCGRG 2 cut(s) 13, 390
BsiSI CCGG 6 cut(s) 117, 321, 401, 461, 467, 568
BslI CCNNNNNNNGG 2 cut(s) 361, 466
BsmAI GTCTC 1 cut(s) 46
BsmBI CGTCTC 1 cut(s) 46
BsnI GGCC 5 cut(s) 5, 62, 320, 404, 488
BsoBI CYCGRG 2 cut(s) 13, 390
Bsp1286I GDGCHC 1 cut(s) 397
Bsp143I GATC 3 cut(s) 87, 183, 523
BspACI CCGC 5 cut(s) 34, 59, 149, 381, 413
BspANI GGCC 5 cut(s) 5, 62, 320, 404, 488
BspFNI CGCG 1 cut(s) 151
BspLI GGNNCC 5 cut(s) 20, 63, 99, 147, 465
BspMI ACCTGC 1 cut(s) 95
BspPI GGATC 2 cut(s) 82, 178
BspT107I GGYRCC 4 cut(s) 18, 97, 145, 463
BsrFI RCCGGY 2 cut(s) 116, 567
BssAI RCCGGY 2 cut(s) 116, 567
BssECI CCNNGG 2 cut(s) 141, 283
BssMI GATC 3 cut(s) 87, 183, 523
BssNI GRCGYC 2 cut(s) 146, 306
BssT1I CCWWGG 2 cut(s) 141, 283
Bst4CI ACNGT 2 cut(s) 296, 371
Bst6I CTCTTC 2 cut(s) 198, 523
BstACI GRCGYC 2 cut(s) 146, 306
BstC8I GCNNGC 2 cut(s) 453, 457
BstDEI CTNAG 1 cut(s) 159
BstFNI CGCG 1 cut(s) 151
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 3 cut(s) 90, 186, 526
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 3 cut(s) 87, 183, 523
BstMCI CGRYCG 2 cut(s) 117, 405
BstMWI GCNNNNNNNGC 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 459
BstUI CGCG 1 cut(s) 151
BstX2I RGATCY 1 cut(s) 183
BstYI RGATCY 1 cut(s) 183
BstZI CGGCCG 1 cut(s) 402
BsuRI GGCC 5 cut(s) 5, 62, 320, 404, 488
BveI ACCTGC 1 cut(s) 95
Cac8I GCNNGC 2 cut(s) 453, 457
CfoI GCGC 1 cut(s) 148
Cfr10I RCCGGY 2 cut(s) 116, 567
Cfr13I GGNCC 3 cut(s) 61, 280, 486
Csp6I GTAC 2 cut(s) 19, 297
CspAI ACCGGT 1 cut(s) 116
CviAII CATG 1 cut(s) 277
CviQI GTAC 2 cut(s) 19, 297
DdeI CTNAG 1 cut(s) 159
DinI GGCGCC 1 cut(s) 147
DpnI GATC 3 cut(s) 89, 185, 525
DpnII GATC 3 cut(s) 87, 183, 523
DrdI GACNNNNNNGTC 1 cut(s) 38
DseDI GACNNNNNNGTC 1 cut(s) 38
EaeI YGGCCR 3 cut(s) 3, 318, 402
EagI CGGCCG 1 cut(s) 402
Eam1104I CTCTTC 2 cut(s) 198, 523
EarI CTCTTC 2 cut(s) 198, 523
Ecl136II GAGCTC 1 cut(s) 395
EclXI CGGCCG 1 cut(s) 402
Eco130I CCWWGG 2 cut(s) 141, 283
Eco24I GRGCYC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 280
Eco52I CGGCCG 1 cut(s) 402
Eco53kI GAGCTC 1 cut(s) 395
Eco57I CTGAAG 1 cut(s) 118
Eco88I CYCGRG 2 cut(s) 13, 390
EcoICRI GAGCTC 1 cut(s) 395
EcoT14I CCWWGG 2 cut(s) 141, 283
EcoT38I GRGCYC 1 cut(s) 397
EgeI GGCGCC 1 cut(s) 147
EheI GGCGCC 1 cut(s) 147
ErhI CCWWGG 2 cut(s) 141, 283
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 1 cut(s) 280
FaiI YATR 1 cut(s) 278
FatI CATG 1 cut(s) 276
Fnu4HI GCNGC 3 cut(s) 60, 149, 382
FriOI GRGCYC 1 cut(s) 397
Fsp4HI GCNGC 3 cut(s) 60, 149, 382
GlaI GCGC 1 cut(s) 147
GluI GCNGC 3 cut(s) 60, 149, 382
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 5 cut(s) 5, 62, 320, 404, 488
HapII CCGG 6 cut(s) 117, 321, 401, 461, 467, 568
HhaI GCGC 1 cut(s) 148
Hin1I GRCGYC 2 cut(s) 146, 306
Hin1II CATG 1 cut(s) 280
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HinfI GANTC 2 cut(s) 334, 470
HpaII CCGG 6 cut(s) 117, 321, 401, 461, 467, 568
HphI GGTGA 1 cut(s) 378
Hpy188I TCNGA 1 cut(s) 333
Hpy188III TCNNGA 1 cut(s) 505
Hpy99I CGWCG 2 cut(s) 308, 311
HpyAV CCTTC 4 cut(s) 208, 310, 487, 546
HpyCH4III ACNGT 2 cut(s) 296, 371
HpyCH4IV ACGT 1 cut(s) 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 401
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 1 cut(s) 306
Hsp92I GRCGYC 2 cut(s) 146, 306
Hsp92II CATG 1 cut(s) 280
HspAI GCGC 1 cut(s) 146
KasI GGCGCC 1 cut(s) 145
KpnI GGTACC 1 cut(s) 22
Kzo9I GATC 3 cut(s) 87, 183, 523
LmnI GCTCC 2 cut(s) 129, 400
LpnPI CCDG 8 cut(s) 90, 114, 130, 334, 414, 474, 480, 534
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 1 cut(s) 433
MalI GATC 3 cut(s) 89, 185, 525
MboI GATC 3 cut(s) 87, 183, 523
MflI RGATCY 1 cut(s) 183
MhlI GDGCHC 1 cut(s) 397
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 66, 252
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 146
MmeI TCCRAC 2 cut(s) 99, 311
MnlI CCTC 9 cut(s) 47, 101, 365, 408, 435, 438, 441, 501, 524
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 1 cut(s) 431
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 6 cut(s) 117, 321, 401, 461, 467, 568
MspR9I CCNGG 1 cut(s) 461
MvnI CGCG 1 cut(s) 151
MwoI GCNNNNNNNGC 1 cut(s) 401
NarI GGCGCC 1 cut(s) 146
NciI CCSGG 1 cut(s) 461
NdeII GATC 3 cut(s) 87, 183, 523
NlaIII CATG 1 cut(s) 280
NlaIV GGNNCC 5 cut(s) 20, 63, 99, 147, 465
NmeAIII GCCGAG 4 cut(s) 35, 74, 430, 514
NmuCI GTSAC 1 cut(s) 433
OliI CACNNNNGTG 1 cut(s) 431
PcsI WCGNNNNNNNCGW 2 cut(s) 337, 343
PfeI GAWTC 2 cut(s) 334, 470
PinAI ACCGGT 1 cut(s) 116
PkrI GCNGC 3 cut(s) 61, 150, 383
PluTI GGCGCC 1 cut(s) 149
Psp124BI GAGCTC 1 cut(s) 397
PspN4I GGNNCC 5 cut(s) 20, 63, 99, 147, 465
PspPI GGNCC 3 cut(s) 61, 280, 486
PsuI RGATCY 1 cut(s) 183
RsaI GTAC 2 cut(s) 20, 298
RsaNI GTAC 2 cut(s) 19, 297
RseI CAYNNNNRTG 1 cut(s) 431
SacI GAGCTC 1 cut(s) 397
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 3 cut(s) 60, 149, 382
Sau3AI GATC 3 cut(s) 87, 183, 523
Sau96I GGNCC 3 cut(s) 61, 280, 486
ScrFI CCNGG 1 cut(s) 461
SduI GDGCHC 1 cut(s) 397
SetI ASST 8 cut(s) 24, 109, 134, 302, 309, 357, 397, 457
SfoI GGCGCC 1 cut(s) 147
SinI GGWCC 1 cut(s) 280
SmiMI CAYNNNNRTG 1 cut(s) 431
Sse9I AATT 2 cut(s) 66, 252
SsiI CCGC 5 cut(s) 34, 59, 149, 381, 413
SspDI GGCGCC 1 cut(s) 145
SstI GAGCTC 1 cut(s) 397
StyD4I CCNGG 1 cut(s) 459
StyI CCWWGG 2 cut(s) 141, 283
TaaI ACNGT 2 cut(s) 296, 371
TaiI ACGT 1 cut(s) 309
TaqI TCGA 6 cut(s) 113, 303, 309, 346, 504, 526
TasI AATT 2 cut(s) 66, 252
TauI GCSGC 3 cut(s) 62, 151, 384
TfiI GAWTC 2 cut(s) 334, 470
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TseFI GTSAC 1 cut(s) 433
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 280
ZraI GACGTC 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.