Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004083

Physical Location & Seq

Genomic Coordinates Reverse (-)

7659969 .. 7660597

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g09190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGGGGAGTTCAAGCATTTGGTGATTGTTAAGTTCAAGGAAGATGTGGTGGTGGAGGACATTTTGAAAGATCTGGAGAAAATGGTTGCTGAGATTGATGCGGTTAAGTCATTTGAATGGGGACAGGACTTGGAAAGCCCAGAGATGCTTAGGCAAGGGTTTACCCATGCCTTCTTGACGACATTCGATAAGAAGGAAGATTATACTGTGTTTGTTGGCCACCCTAAACATCAAGAATTTTCAGCAACATTTTCAACAGTTCTAGAAAAGATTGTGCTGCTTGATTTCCCGGCTACTCTTGTCAAGCCACCACCCAAGGCACCGGCGGAGGAACCACCAGCTACCCTGAATGATCAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dabb

Protein Analysis

121

Amino Acids

13.66

Weight (kDa)

4.93

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22580
fragaria_vesca	FvH4_3g29640
malus_domestica	MD03G1136000.v1.1 MD11G1158500.v1.1
prunus_persica	Prupe.6G120300_v2.0.a1
pyrus_communis	pycom03g09190
rosa_chinensis	RchiOBHm_Chr5g0055001
rosa_laevigata	RLG00000034955
rosa_multiflora	Rmu_co8073320.1_g000001 Rmu_sc0000502.1_g000018 Rmu_sc0000631.1_g000027 Rmu_sc0000894.1_g000005 Rmu_sc0001023.1_g000031 Rmu_sc0002590.1_g000009 Rmu_sc0002700.1_g000034 Rmu_sc0002831.1_g000015 Rmu_sc0003351.1_g000004 Rmu_sc0004354.1_g000003 Rmu_sc0007341.1_g000039 Rmu_sc0011695.1_g000003 Rmu_sc0018119.1_g000001 Rmu_ssc0000184.1_g000026 Rmu_ssc0000238.1_g000026
rosa_roxburghii	Rroxscaffold_1G00025510 Rroxscaffold_3G00240200 Rroxscaffold_4G00316460 Rroxscaffold_7G00186340
rosa_rugosa	Rorug05G0289800
rosa_samantha	Rh5AG359900 Rh5BG370900 Rh5CG393200 Rh5DG384700
rosa_wichuraiana	Rw5G033860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	319
AciI	CCGC	2 cut(s)	101, 326
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	236
AgsI	TTSAA	5 cut(s)	13, 37, 67, 116, 255
AluBI	AGCT	1 cut(s)	341
AluI	AGCT	1 cut(s)	341
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	1 cut(s)	277
ApoI	RAATTY	1 cut(s)	236
AsuC2I	CCSGG	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	34
BalI	TGGCCA	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	319
BbvI	GCAGC	1 cut(s)	264
BclI	TGATCA	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	290
BfaI	CTAG	1 cut(s)	263
BglII	AGATCT	1 cut(s)	70
BisI	GCNGC	1 cut(s)	278
BlsI	GCNGC	1 cut(s)	279
Bme1390I	CCNGG	1 cut(s)	290
BmiI	GGNNCC	2 cut(s)	321, 333
BmrFI	CCNGG	1 cut(s)	290
BmsI	GCATC	2 cut(s)	88, 135
BpmI	CTGGAG	1 cut(s)	95
Bpu10I	CCTNAGC	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	315
Bse118I	RCCGGY	1 cut(s)	322
BseDI	CCNNGG	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	264
BshFI	GGCC	1 cut(s)	219
BshNI	GGYRCC	1 cut(s)	319
BsiSI	CCGG	2 cut(s)	290, 323
BslFI	GGGAC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	135
BsnI	GGCC	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	70, 352
BspACI	CCGC	2 cut(s)	101, 326
BspANI	GGCC	1 cut(s)	219
BspCNI	CTCAG	1 cut(s)	82
BspLI	GGNNCC	2 cut(s)	321, 333
BspT107I	GGYRCC	1 cut(s)	319
BsrFI	RCCGGY	1 cut(s)	322
BssAI	RCCGGY	1 cut(s)	322
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	2 cut(s)	70, 352
BssT1I	CCWWGG	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	208, 259
BstDEI	CTNAG	2 cut(s)	90, 149
BstKTI	GATC	2 cut(s)	73, 355
BstMBI	GATC	2 cut(s)	70, 352
BstSCI	CCNGG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	264
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	219
Cfr10I	RCCGGY	1 cut(s)	322
CviAII	CATG	1 cut(s)	167
CviJI	RGCY	5 cut(s)	138, 219, 293, 307, 341
CviKI_1	RGCY	5 cut(s)	138, 219, 293, 307, 341
DdeI	CTNAG	2 cut(s)	90, 149
DpnI	GATC	2 cut(s)	72, 354
DpnII	GATC	2 cut(s)	70, 352
EaeI	YGGCCR	1 cut(s)	217
EciI	GGCGGA	1 cut(s)	341
Eco130I	CCWWGG	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	1 cut(s)	170
FaiI	YATR	2 cut(s)	168, 204
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	1 cut(s)	166
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	278
FspBI	CTAG	1 cut(s)	263
GluI	GCNGC	1 cut(s)	278
GsuI	CTGGAG	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	2 cut(s)	290, 323
Hin1II	CATG	1 cut(s)	170
HpaII	CCGG	2 cut(s)	290, 323
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	1 cut(s)	357
Hpy188III	TCNNGA	4 cut(s)	74, 175, 233, 263
Hpy8I	GTNNAC	1 cut(s)	162
HpyAV	CCTTC	2 cut(s)	181, 187
HpyCH4III	ACNGT	2 cut(s)	208, 259
HpyF3I	CTNAG	2 cut(s)	90, 149
Hsp92II	CATG	1 cut(s)	170
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	70, 352
LpnPI	CCDG	7 cut(s)	59, 110, 153, 303, 336, 351, 359
Lsp1109I	GCAGC	1 cut(s)	264
LweI	GCATC	2 cut(s)	88, 135
MaeI	CTAG	1 cut(s)	263
MalI	GATC	2 cut(s)	72, 354
MboI	GATC	2 cut(s)	70, 352
MboII	GAAGA	2 cut(s)	53, 209
MflI	RGATCY	1 cut(s)	70
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	1 cut(s)	236
MluNI	TGGCCA	1 cut(s)	219
MnlI	CCTC	2 cut(s)	49, 322
Mox20I	TGGCCA	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	219
MseI	TTAA	2 cut(s)	30, 105
MslI	CAYNNNNRTG	1 cut(s)	115
Msp20I	TGGCCA	1 cut(s)	219
MspI	CCGG	2 cut(s)	290, 323
MspR9I	CCNGG	1 cut(s)	290
NciI	CCSGG	1 cut(s)	290
NdeII	GATC	2 cut(s)	70, 352
NlaIII	CATG	1 cut(s)	170
NlaIV	GGNNCC	2 cut(s)	321, 333
PkrI	GCNGC	1 cut(s)	279
PspN4I	GGNNCC	2 cut(s)	321, 333
PsuI	RGATCY	1 cut(s)	70
RseI	CAYNNNNRTG	1 cut(s)	115
SaqAI	TTAA	2 cut(s)	30, 105
SatI	GCNGC	1 cut(s)	278
Sau3AI	GATC	2 cut(s)	70, 352
ScrFI	CCNGG	1 cut(s)	290
SetI	ASST	1 cut(s)	343
SfaNI	GCATC	2 cut(s)	88, 135
SgrAI	CRCCGGYG	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	115
Sse9I	AATT	1 cut(s)	236
SsiI	CCGC	2 cut(s)	101, 326
SspMI	CTAG	1 cut(s)	263
StyD4I	CCNGG	1 cut(s)	288
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	208, 259
TaqI	TCGA	1 cut(s)	186
TasI	AATT	1 cut(s)	236
Tru1I	TTAA	2 cut(s)	30, 105
Tru9I	TTAA	2 cut(s)	30, 105
TseI	GCWGC	1 cut(s)	277
XapI	RAATTY	1 cut(s)	236
XbaI	TCTAGA	1 cut(s)	262
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.