Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000184.1

Orthogroup ID

OG0004083

Physical Location & Seq

Genomic Coordinates Forward (+)

94655 .. 94999

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000184.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ctgtggattaaccacctcctcccatcgttttccctgtccgatcactcaaatccctcccgttcggcgccaagattgctaccatgctcgacggccactctctcatggtaccttccggctgaacgcctcgtctcgctcaacaactcggcggccccaatttacgccgacgggtcgttgatcatctcagcaccagcaggttcttcgaccggtattgggttcgattggaagcttcaaccccaagctgcttggcgccgcgaaaccttaagaagaagaagaagaaaatcccagaagaagaagaacgaagaagaagaaggaagaaaaagaaatgaaaagaaaggaaaaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.91

Weight (kDa)

10.6

Isoelectric Point (pI)

80.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22580
fragaria_vesca	FvH4_3g29640
malus_domestica	MD03G1136000.v1.1 MD11G1158500.v1.1
prunus_persica	Prupe.6G120300_v2.0.a1
pyrus_communis	pycom03g09190
rosa_chinensis	RchiOBHm_Chr5g0055001
rosa_laevigata	RLG00000034955
rosa_multiflora	Rmu_co8073320.1_g000001 Rmu_sc0000502.1_g000018 Rmu_sc0000631.1_g000027 Rmu_sc0000894.1_g000005 Rmu_sc0001023.1_g000031 Rmu_sc0002590.1_g000009 Rmu_sc0002700.1_g000034 Rmu_sc0002831.1_g000015 Rmu_sc0003351.1_g000004 Rmu_sc0004354.1_g000003 Rmu_sc0007341.1_g000039 Rmu_sc0011695.1_g000003 Rmu_sc0018119.1_g000001 Rmu_ssc0000184.1_g000026 Rmu_ssc0000238.1_g000026
rosa_roxburghii	Rroxscaffold_1G00025510 Rroxscaffold_3G00240200 Rroxscaffold_4G00316460 Rroxscaffold_7G00186340
rosa_rugosa	Rorug05G0289800
rosa_samantha	Rh5AG359900 Rh5BG370900 Rh5CG393200 Rh5DG384700
rosa_wichuraiana	Rw5G033860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	182
Acc65I	GGTACC	1 cut(s)	105
AccB1I	GGYRCC	3 cut(s)	64, 105, 246
AccII	CGCG	1 cut(s)	252
AciI	CCGC	2 cut(s)	146, 250
AcoI	YGGCCR	1 cut(s)	90
AcyI	GRCGYC	2 cut(s)	65, 247
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	210
AflII	CTTAAG	1 cut(s)	259
AgeI	ACCGGT	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	230
AluBI	AGCT	2 cut(s)	226, 239
AluI	AGCT	2 cut(s)	226, 239
Alw26I	GTCTC	1 cut(s)	133
AoxI	GGCC	2 cut(s)	90, 147
ApeKI	GCWGC	1 cut(s)	239
AsiGI	ACCGGT	1 cut(s)	203
Asp718I	GGTACC	1 cut(s)	105
AspLEI	GCGC	2 cut(s)	67, 249
AspS9I	GGNCC	1 cut(s)	148
BanI	GGYRCC	3 cut(s)	64, 105, 246
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	1 cut(s)	105
BcgI	CGANNNNNNTGC	2 cut(s)	180, 214
BclI	TGATCA	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	133
BfoI	RGCGCY	2 cut(s)	68, 250
BfrI	CTTAAG	1 cut(s)	259
BfuAI	ACCTGC	1 cut(s)	182
BisI	GCNGC	3 cut(s)	147, 240, 250
BlsI	GCNGC	3 cut(s)	148, 241, 251
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	4 cut(s)	66, 107, 150, 248
BsaHI	GRCGYC	2 cut(s)	65, 247
BsaWI	WCCGGW	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse118I	RCCGGY	1 cut(s)	203
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	226
Bsh1236I	CGCG	1 cut(s)	252
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	2 cut(s)	92, 149
BshNI	GGYRCC	3 cut(s)	64, 105, 246
BshTI	ACCGGT	1 cut(s)	203
BsiEI	CGRYCG	1 cut(s)	204
BsiSI	CCGG	2 cut(s)	113, 204
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmAI	GTCTC	1 cut(s)	133
BsmBI	CGTCTC	1 cut(s)	133
BsnI	GGCC	2 cut(s)	92, 149
Bsp143I	GATC	2 cut(s)	40, 174
BspACI	CCGC	2 cut(s)	146, 250
BspANI	GGCC	2 cut(s)	92, 149
BspCNI	CTCAG	1 cut(s)	194
BspFNI	CGCG	1 cut(s)	252
BspLI	GGNNCC	4 cut(s)	66, 107, 150, 248
BspMI	ACCTGC	1 cut(s)	182
BspT107I	GGYRCC	3 cut(s)	64, 105, 246
BspTI	CTTAAG	1 cut(s)	259
BsrFI	RCCGGY	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	203
BssMI	GATC	2 cut(s)	40, 174
BssNI	GRCGYC	2 cut(s)	65, 247
BstACI	GRCGYC	2 cut(s)	65, 247
BstAFI	CTTAAG	1 cut(s)	259
BstDEI	CTNAG	1 cut(s)	181
BstFNI	CGCG	1 cut(s)	252
BstH2I	RGCGCY	2 cut(s)	68, 250
BstHHI	GCGC	2 cut(s)	67, 249
BstKTI	GATC	2 cut(s)	43, 177
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	2 cut(s)	40, 174
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	1 cut(s)	226
BsuRI	GGCC	2 cut(s)	92, 149
BveI	ACCTGC	1 cut(s)	182
CfoI	GCGC	2 cut(s)	67, 249
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	106
CspAI	ACCGGT	1 cut(s)	203
CviAII	CATG	2 cut(s)	81, 102
CviJI	RGCY	5 cut(s)	92, 116, 149, 226, 239
CviKI_1	RGCY	5 cut(s)	92, 116, 149, 226, 239
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	1 cut(s)	181
DinI	GGCGCC	2 cut(s)	66, 248
DpnI	GATC	2 cut(s)	42, 176
DpnII	GATC	2 cut(s)	40, 174
EaeI	YGGCCR	1 cut(s)	90
EgeI	GGCGCC	2 cut(s)	66, 248
EheI	GGCGCC	2 cut(s)	66, 248
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	2 cut(s)	84, 105
FaiI	YATR	2 cut(s)	82, 103
FatI	CATG	2 cut(s)	80, 101
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	3 cut(s)	147, 240, 250
Fsp4HI	GCNGC	3 cut(s)	147, 240, 250
GlaI	GCGC	2 cut(s)	66, 248
GluI	GCNGC	3 cut(s)	147, 240, 250
HaeII	RGCGCY	2 cut(s)	68, 250
HaeIII	GGCC	2 cut(s)	92, 149
HapII	CCGG	2 cut(s)	113, 204
HhaI	GCGC	2 cut(s)	67, 249
Hin1I	GRCGYC	2 cut(s)	65, 247
Hin1II	CATG	2 cut(s)	84, 105
Hin6I	GCGC	2 cut(s)	65, 247
HinP1I	GCGC	2 cut(s)	65, 247
HindIII	AAGCTT	1 cut(s)	224
HpaII	CCGG	2 cut(s)	113, 204
Hpy188I	TCNGA	1 cut(s)	40
Hpy99I	CGWCG	2 cut(s)	91, 167
HpyAV	CCTTC	2 cut(s)	119, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	1 cut(s)	181
Hsp92I	GRCGYC	2 cut(s)	65, 247
Hsp92II	CATG	2 cut(s)	84, 105
HspAI	GCGC	2 cut(s)	65, 247
KasI	GGCGCC	2 cut(s)	64, 246
KpnI	GGTACC	1 cut(s)	109
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	40, 174
LpnPI	CCDG	6 cut(s)	47, 126, 177, 201, 217, 296
Lsp1109I	GCAGC	1 cut(s)	226
MalI	GATC	2 cut(s)	42, 176
MboI	GATC	2 cut(s)	40, 174
MluCI	AATT	1 cut(s)	153
Mly113I	GGCGCC	2 cut(s)	65, 247
MnlI	CCTC	4 cut(s)	26, 29, 64, 134
MseI	TTAA	2 cut(s)	9, 260
MspCI	CTTAAG	1 cut(s)	259
MspI	CCGG	2 cut(s)	113, 204
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	73
NarI	GGCGCC	2 cut(s)	65, 247
NdeII	GATC	2 cut(s)	40, 174
NlaIII	CATG	2 cut(s)	84, 105
NlaIV	GGNNCC	4 cut(s)	66, 107, 150, 248
NmeAIII	GCCGAG	1 cut(s)	122
PinAI	ACCGGT	1 cut(s)	203
PkrI	GCNGC	3 cut(s)	148, 241, 251
PluTI	GGCGCC	2 cut(s)	68, 250
PspN4I	GGNNCC	4 cut(s)	66, 107, 150, 248
PspPI	GGNCC	1 cut(s)	148
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SaqAI	TTAA	2 cut(s)	9, 260
SatI	GCNGC	3 cut(s)	147, 240, 250
Sau3AI	GATC	2 cut(s)	40, 174
Sau96I	GGNCC	1 cut(s)	148
SetI	ASST	6 cut(s)	18, 111, 196, 228, 241, 260
SfoI	GGCGCC	2 cut(s)	66, 248
SmlI	CTYRAG	1 cut(s)	259
SmoI	CTYRAG	1 cut(s)	259
Sse9I	AATT	1 cut(s)	153
SsiI	CCGC	2 cut(s)	146, 250
SspDI	GGCGCC	2 cut(s)	64, 246
TaqI	TCGA	3 cut(s)	86, 200, 216
TasI	AATT	1 cut(s)	153
TauI	GCSGC	2 cut(s)	149, 252
Tru1I	TTAA	2 cut(s)	9, 260
Tru9I	TTAA	2 cut(s)	9, 260
TseI	GCWGC	1 cut(s)	239
TspDTI	ATGAA	1 cut(s)	339
Vha464I	CTTAAG	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.