Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018119.1

Orthogroup ID

OG0004083

Physical Location & Seq

Genomic Coordinates Reverse (-)

532 .. 849

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018119.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atgaagcaagcggcttctgatgatggtgaggatgatgatgatctcgggtttgttcctgaggccttgatgtgtactctgtttaaaagggtgggtctttttcaccagcagaagcagagaaaaccagaccttgtctcgctcaacaactcggcggccccaatttacgccgacaggtcgttgatcatctcggcaccagcaggttcttcgaccagtatcgggttcgattgggagcttcagccccaagctgcttggcgccacgaaaccctaagaagaggaaaatcccagaagaagaaggaaaaaaaagaaaaggaaaaaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

11.84

Weight (kDa)

9.07

Isoelectric Point (pI)

52.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22580
fragaria_vesca	FvH4_3g29640
malus_domestica	MD03G1136000.v1.1 MD11G1158500.v1.1
prunus_persica	Prupe.6G120300_v2.0.a1
pyrus_communis	pycom03g09190
rosa_chinensis	RchiOBHm_Chr5g0055001
rosa_laevigata	RLG00000034955
rosa_multiflora	Rmu_co8073320.1_g000001 Rmu_sc0000502.1_g000018 Rmu_sc0000631.1_g000027 Rmu_sc0000894.1_g000005 Rmu_sc0001023.1_g000031 Rmu_sc0002590.1_g000009 Rmu_sc0002700.1_g000034 Rmu_sc0002831.1_g000015 Rmu_sc0003351.1_g000004 Rmu_sc0004354.1_g000003 Rmu_sc0007341.1_g000039 Rmu_sc0011695.1_g000003 Rmu_sc0018119.1_g000001 Rmu_ssc0000184.1_g000026 Rmu_ssc0000238.1_g000026
rosa_roxburghii	Rroxscaffold_1G00025510 Rroxscaffold_3G00240200 Rroxscaffold_4G00316460 Rroxscaffold_7G00186340
rosa_rugosa	Rorug05G0289800
rosa_samantha	Rh5AG359900 Rh5BG370900 Rh5CG393200 Rh5DG384700
rosa_wichuraiana	Rw5G033860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	185
AccB1I	GGYRCC	2 cut(s)	187, 249
AciI	CCGC	2 cut(s)	11, 149
AcuI	CTGAAG	1 cut(s)	215
AcyI	GRCGYC	1 cut(s)	250
AfaI	GTAC	1 cut(s)	73
AfiI	CCNNNNNNNGG	1 cut(s)	213
AluBI	AGCT	2 cut(s)	229, 242
AluI	AGCT	2 cut(s)	229, 242
Alw26I	GTCTC	1 cut(s)	136
Ama87I	CYCGRG	1 cut(s)	44
AoxI	GGCC	2 cut(s)	60, 150
ApeKI	GCWGC	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	252
AspS9I	GGNCC	1 cut(s)	151
AsuHPI	GGTGA	2 cut(s)	38, 92
AvaI	CYCGRG	1 cut(s)	44
AxyI	CCTNAGG	1 cut(s)	57
BanI	GGYRCC	2 cut(s)	187, 249
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	1 cut(s)	17
BcgI	CGANNNNNNTGC	2 cut(s)	183, 217
BclI	TGATCA	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	136
BfoI	RGCGCY	1 cut(s)	253
BfuAI	ACCTGC	1 cut(s)	185
BisI	GCNGC	3 cut(s)	12, 150, 243
BlsI	GCNGC	3 cut(s)	13, 151, 244
BmeT110I	CYCGRG	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	3 cut(s)	153, 189, 251
BsaBI	GATNNNNATC	1 cut(s)	39
BsaHI	GRCGYC	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	1 cut(s)	213
Bse1I	ACTGG	1 cut(s)	207
Bse21I	CCTNAGG	1 cut(s)	57
Bse8I	GATNNNNATC	1 cut(s)	39
BseGI	GGATG	1 cut(s)	37
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	207
BseXI	GCAGC	1 cut(s)	229
BshFI	GGCC	2 cut(s)	62, 152
BshNI	GGYRCC	2 cut(s)	187, 249
BsiHKCI	CYCGRG	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	213
BsmAI	GTCTC	1 cut(s)	136
BsnI	GGCC	2 cut(s)	62, 152
BsoBI	CYCGRG	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	40, 177
BspACI	CCGC	2 cut(s)	11, 149
BspANI	GGCC	2 cut(s)	62, 152
BspCNI	CTCAG	1 cut(s)	49
BspLI	GGNNCC	3 cut(s)	153, 189, 251
BspMI	ACCTGC	1 cut(s)	185
BspT107I	GGYRCC	2 cut(s)	187, 249
BsrI	ACTGG	1 cut(s)	207
BssMI	GATC	2 cut(s)	40, 177
BssNI	GRCGYC	1 cut(s)	250
Bst6I	CTCTTC	1 cut(s)	262
BstACI	GRCGYC	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	2 cut(s)	57, 263
BstF5I	GGATG	1 cut(s)	37
BstH2I	RGCGCY	1 cut(s)	253
BstHHI	GCGC	1 cut(s)	252
BstKTI	GATC	2 cut(s)	43, 180
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	2 cut(s)	40, 177
BstV1I	GCAGC	1 cut(s)	229
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	62, 152
BtsCI	GGATG	1 cut(s)	37
BveI	ACCTGC	1 cut(s)	185
Cac8I	GCNNGC	1 cut(s)	9
CfoI	GCGC	1 cut(s)	252
Cfr13I	GGNCC	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	72
CviJI	RGCY	6 cut(s)	14, 62, 152, 229, 235, 242
CviKI_1	RGCY	6 cut(s)	14, 62, 152, 229, 235, 242
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	2 cut(s)	57, 263
DinI	GGCGCC	1 cut(s)	251
DpnI	GATC	2 cut(s)	42, 179
DpnII	GATC	2 cut(s)	40, 177
DraI	TTTAAA	1 cut(s)	82
Eam1104I	CTCTTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	262
Eco147I	AGGCCT	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	215
Eco81I	CCTNAGG	1 cut(s)	57
Eco88I	CYCGRG	1 cut(s)	44
EgeI	GGCGCC	1 cut(s)	251
EheI	GGCGCC	1 cut(s)	251
FbaI	TGATCA	1 cut(s)	177
Fnu4HI	GCNGC	3 cut(s)	12, 150, 243
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	3 cut(s)	12, 150, 243
GlaI	GCGC	1 cut(s)	251
GluI	GCNGC	3 cut(s)	12, 150, 243
HaeII	RGCGCY	1 cut(s)	253
HaeIII	GGCC	2 cut(s)	62, 152
HhaI	GCGC	1 cut(s)	252
Hin1I	GRCGYC	1 cut(s)	250
Hin6I	GCGC	1 cut(s)	250
HinP1I	GCGC	1 cut(s)	250
HphI	GGTGA	2 cut(s)	38, 92
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	1 cut(s)	72
HpyAV	CCTTC	1 cut(s)	283
HpyF3I	CTNAG	2 cut(s)	57, 263
Hsp92I	GRCGYC	1 cut(s)	250
HspAI	GCGC	1 cut(s)	250
KasI	GGCGCC	1 cut(s)	249
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	2 cut(s)	40, 177
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	8 cut(s)	69, 116, 135, 154, 180, 204, 220, 293
Lsp1109I	GCAGC	1 cut(s)	229
MalI	GATC	2 cut(s)	42, 179
MboI	GATC	2 cut(s)	40, 177
MboII	GAAGA	4 cut(s)	192, 279, 295, 298
MluCI	AATT	1 cut(s)	156
Mly113I	GGCGCC	1 cut(s)	250
MnlI	CCTC	3 cut(s)	22, 52, 263
MseI	TTAA	1 cut(s)	81
NarI	GGCGCC	1 cut(s)	250
NdeII	GATC	2 cut(s)	40, 177
NlaIV	GGNNCC	3 cut(s)	153, 189, 251
NmeAIII	GCCGAG	2 cut(s)	125, 164
PceI	AGGCCT	1 cut(s)	62
PflFI	GACNNNGTC	1 cut(s)	128
PkrI	GCNGC	3 cut(s)	13, 151, 244
PluTI	GGCGCC	1 cut(s)	253
PspN4I	GGNNCC	3 cut(s)	153, 189, 251
PspPI	GGNCC	1 cut(s)	151
PsyI	GACNNNGTC	1 cut(s)	128
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	3 cut(s)	12, 150, 243
Sau3AI	GATC	2 cut(s)	40, 177
Sau96I	GGNCC	1 cut(s)	151
SetI	ASST	5 cut(s)	129, 173, 199, 231, 244
SfoI	GGCGCC	1 cut(s)	251
Sse9I	AATT	1 cut(s)	156
SseBI	AGGCCT	1 cut(s)	62
SsiI	CCGC	2 cut(s)	11, 149
SspDI	GGCGCC	1 cut(s)	249
StuI	AGGCCT	1 cut(s)	62
TaqI	TCGA	2 cut(s)	203, 219
TasI	AATT	1 cut(s)	156
TatI	WGTACW	1 cut(s)	71
TauI	GCSGC	2 cut(s)	14, 152
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.