Rmu_sc0000894.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000894.1
OG0004083
Physical Location & Seq
Forward (+)
18868 .. 19176
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000894.1_g000005.1.cds

Sequence Viewer

Length: 309 bp
atggcttccctagaactggacagccttccctttggagaccgtacgtactctgcctcgacgaccactctctcaaggtaccttccggctgaatgcctcatctcgctcaacaactcagcggccccaatttatgccgacgggtcgttgatcatcccagcaccagcaggttcttcgaccgatatcgagttcgattgggagcttcagccccaagctgcttggtgccgcgaaaccctaagaagaagaagaagaagaagaaaatcccagaagaagaagaaggaagaaaaagaaatgaaaagaaaaggaaaaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.65

Weight (kDa)

9.82

Isoelectric Point (pI)

92.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 152
Acc65I GGTACC 1 cut(s) 75
AccB1I GGYRCC 2 cut(s) 75, 216
AccII CGCG 1 cut(s) 222
AciI CCGC 2 cut(s) 116, 220
AcuI CTGAAG 1 cut(s) 182
AfaI GTAC 3 cut(s) 43, 47, 77
AfiI CCNNNNNNNGG 1 cut(s) 16
AluBI AGCT 2 cut(s) 196, 209
AluI AGCT 2 cut(s) 196, 209
Alw26I GTCTC 1 cut(s) 30
AoxI GGCC 1 cut(s) 117
ApeKI GCWGC 1 cut(s) 209
Asp718I GGTACC 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 118
BanI GGYRCC 2 cut(s) 75, 216
BbvI GCAGC 1 cut(s) 196
BcgI CGANNNNNNTGC 2 cut(s) 150, 184
BclI TGATCA 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 30
BfaI CTAG 1 cut(s) 11
BfuAI ACCTGC 1 cut(s) 152
BisI GCNGC 3 cut(s) 117, 210, 220
BlsI GCNGC 3 cut(s) 118, 211, 221
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 3 cut(s) 77, 120, 218
BpuEI CTTGAG 1 cut(s) 55
BsaAI YACGTR 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 21
BseXI GCAGC 1 cut(s) 196
BseYI CCCAGC 1 cut(s) 151
Bsh1236I CGCG 1 cut(s) 222
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 1 cut(s) 119
BshNI GGYRCC 2 cut(s) 75, 216
BsiEI CGRYCG 1 cut(s) 174
BsiSI CCGG 1 cut(s) 83
BsiWI CGTACG 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 1 cut(s) 30
BsmI GAATGC 1 cut(s) 95
BsnI GGCC 1 cut(s) 119
Bso31I GGTCTC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 144
BspACI CCGC 2 cut(s) 116, 220
BspANI GGCC 1 cut(s) 119
BspCNI CTCAG 1 cut(s) 125
BspFNI CGCG 1 cut(s) 222
BspLI GGNNCC 3 cut(s) 77, 120, 218
BspMI ACCTGC 1 cut(s) 152
BspT107I GGYRCC 2 cut(s) 75, 216
BspTNI GGTCTC 1 cut(s) 30
BsrI ACTGG 1 cut(s) 21
BssMI GATC 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 41
BstBAI YACGTR 1 cut(s) 45
BstDEI CTNAG 2 cut(s) 112, 230
BstF5I GGATG 1 cut(s) 147
BstFNI CGCG 1 cut(s) 222
BstKTI GATC 1 cut(s) 147
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 1 cut(s) 144
BstMCI CGRYCG 1 cut(s) 174
BstSNI TACGTA 1 cut(s) 45
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 196
BsuRI GGCC 1 cut(s) 119
BtsCI GGATG 1 cut(s) 147
BveI ACCTGC 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 118
Csp6I GTAC 3 cut(s) 42, 46, 76
CviJI RGCY 7 cut(s) 5, 24, 86, 119, 196, 202, 209
CviKI_1 RGCY 7 cut(s) 5, 24, 86, 119, 196, 202, 209
CviQI GTAC 3 cut(s) 42, 46, 76
DdeI CTNAG 2 cut(s) 112, 230
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
Eco105I TACGTA 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 30
Eco32I GATATC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 182
EcoRV GATATC 1 cut(s) 178
FaiI YATR 1 cut(s) 129
FbaI TGATCA 1 cut(s) 144
Fnu4HI GCNGC 3 cut(s) 117, 210, 220
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 3 cut(s) 117, 210, 220
FspBI CTAG 1 cut(s) 11
GluI GCNGC 3 cut(s) 117, 210, 220
GsaI CCCAGC 1 cut(s) 155
HaeIII GGCC 1 cut(s) 119
HapII CCGG 1 cut(s) 83
HpaII CCGG 1 cut(s) 83
Hpy99I CGWCG 2 cut(s) 61, 137
HpyAV CCTTC 3 cut(s) 35, 89, 265
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4IV ACGT 1 cut(s) 44
HpyF3I CTNAG 2 cut(s) 112, 230
HpySE526I ACGT 1 cut(s) 44
KpnI GGTACC 1 cut(s) 79
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 1 cut(s) 144
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 6 cut(s) 2, 96, 147, 165, 171, 272
Lsp1109I GCAGC 1 cut(s) 196
MaeI CTAG 1 cut(s) 11
MaeII ACGT 1 cut(s) 44
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MluCI AATT 1 cut(s) 123
MnlI CCTC 2 cut(s) 64, 104
MspA1I CMGCKG 1 cut(s) 116
MspI CCGG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 95
MvnI CGCG 1 cut(s) 222
NdeII GATC 1 cut(s) 144
NlaIV GGNNCC 3 cut(s) 77, 120, 218
PctI GAATGC 1 cut(s) 95
Pfl23II CGTACG 1 cut(s) 41
PkrI GCNGC 3 cut(s) 118, 211, 221
Ppu21I YACGTR 1 cut(s) 45
PspFI CCCAGC 1 cut(s) 151
PspLI CGTACG 1 cut(s) 41
PspN4I GGNNCC 3 cut(s) 77, 120, 218
PspPI GGNCC 1 cut(s) 118
RsaI GTAC 3 cut(s) 43, 47, 77
RsaNI GTAC 3 cut(s) 42, 46, 76
SatI GCNGC 3 cut(s) 117, 210, 220
Sau3AI GATC 1 cut(s) 144
Sau96I GGNCC 1 cut(s) 118
SetI ASST 6 cut(s) 47, 77, 81, 166, 198, 211
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
SnaBI TACGTA 1 cut(s) 45
Sse9I AATT 1 cut(s) 123
SsiI CCGC 2 cut(s) 116, 220
SspMI CTAG 1 cut(s) 11
TaaI ACNGT 1 cut(s) 41
TaiI ACGT 1 cut(s) 47
TaqI TCGA 4 cut(s) 56, 170, 180, 186
TaqII GACCGA 1 cut(s) 188
TasI AATT 1 cut(s) 123
TauI GCSGC 2 cut(s) 119, 222
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 302
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.