MD03G1136000.v1.1

Stress responsive A/B Barrel Domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0004083
Physical Location & Seq
Reverse (-)
13665886 .. 13667213
1328 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1136000.v1.1.491

Sequence Viewer

Length: 396 bp
ATGGGCAGTGCAGTAGAACTAGCAAAAAATATTATGGGGGAGTTCAAGCATTTGGTGATTGTTAAGTTCAAGGAAGATGTCGTGGTGGAGGGGATTTTGAAAGATCTGGAGAAAATGGTCGCTGAGATTGATGCTGTTAAGTCCTTTGAATGGGGACAGGACTTGGAAAGCCCAGAGATGCTTAGGCAAGGGTTTACCCATGCCTTCTTGACGACATTCGACAAGAAGGAAGATTATACTGTGTTTGTTGGCCACCCTAAACATCAAGAATTTTCAGCAACATTTTCAACAGTTCTAGAAAAGATTGTGCTGCTTGATTTCCCGGCTACTCTTGTCAAGCCACCACCCAAGGCACCGGCGGAGGAACCACCAGCTACCCTGAATGATCAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dabb

Protein Analysis

132

Amino Acids

14.72

Weight (kDa)

5.07

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dabb PF07876 16 - 108 5.4e-22 Stress responsive A/B Barrel Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 352
AciI CCGC 1 cut(s) 359
AcoI YGGCCR 1 cut(s) 250
AcsI RAATTY 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 150
AgsI TTSAA 5 cut(s) 46, 70, 100, 149, 288
AluBI AGCT 1 cut(s) 374
AluI AGCT 1 cut(s) 374
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 1 cut(s) 310
ApoI RAATTY 1 cut(s) 269
AsuC2I CCSGG 1 cut(s) 323
AsuHPI GGTGA 1 cut(s) 67
BalI TGGCCA 1 cut(s) 252
BanI GGYRCC 1 cut(s) 352
BbvI GCAGC 1 cut(s) 297
BclI TGATCA 1 cut(s) 385
BcnI CCSGG 1 cut(s) 323
BfaI CTAG 2 cut(s) 20, 296
BglII AGATCT 1 cut(s) 103
BisI GCNGC 1 cut(s) 311
BlsI GCNGC 1 cut(s) 312
Bme1390I CCNGG 1 cut(s) 323
BmiI GGNNCC 2 cut(s) 354, 366
BmrFI CCNGG 1 cut(s) 323
BmsI GCATC 2 cut(s) 121, 168
BpmI CTGGAG 1 cut(s) 128
Bpu10I CCTNAGC 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 348
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse118I RCCGGY 1 cut(s) 355
BseDI CCNNGG 1 cut(s) 348
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 297
BsgI GTGCAG 1 cut(s) 30
BshFI GGCC 1 cut(s) 252
BshNI GGYRCC 1 cut(s) 352
BsiSI CCGG 2 cut(s) 323, 356
BslFI GGGAC 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 168
BsnI GGCC 1 cut(s) 252
Bsp143I GATC 2 cut(s) 103, 385
BspACI CCGC 1 cut(s) 359
BspANI GGCC 1 cut(s) 252
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 2 cut(s) 354, 366
BspT107I GGYRCC 1 cut(s) 352
BsrFI RCCGGY 1 cut(s) 355
BssAI RCCGGY 1 cut(s) 355
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 2 cut(s) 103, 385
BssT1I CCWWGG 1 cut(s) 348
Bst4CI ACNGT 2 cut(s) 241, 292
BstDEI CTNAG 2 cut(s) 123, 182
BstKTI GATC 2 cut(s) 106, 388
BstMBI GATC 2 cut(s) 103, 385
BstSCI CCNGG 1 cut(s) 321
BstV1I GCAGC 1 cut(s) 297
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BsuRI GGCC 1 cut(s) 252
BtsI GCAGTG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 13
Cfr10I RCCGGY 1 cut(s) 355
CviAII CATG 1 cut(s) 200
CviJI RGCY 5 cut(s) 171, 252, 326, 340, 374
CviKI_1 RGCY 5 cut(s) 171, 252, 326, 340, 374
DdeI CTNAG 2 cut(s) 123, 182
DpnI GATC 2 cut(s) 105, 387
DpnII GATC 2 cut(s) 103, 385
EaeI YGGCCR 1 cut(s) 250
EciI GGCGGA 1 cut(s) 374
Eco130I CCWWGG 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 1 cut(s) 203
FaiI YATR 3 cut(s) 35, 201, 237
FaqI GGGAC 1 cut(s) 168
FatI CATG 1 cut(s) 199
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 1 cut(s) 311
Fsp4HI GCNGC 1 cut(s) 311
FspBI CTAG 2 cut(s) 20, 296
GluI GCNGC 1 cut(s) 311
GsuI CTGGAG 1 cut(s) 128
HaeIII GGCC 1 cut(s) 252
HapII CCGG 2 cut(s) 323, 356
Hin1II CATG 1 cut(s) 203
HpaII CCGG 2 cut(s) 323, 356
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 1 cut(s) 390
Hpy188III TCNNGA 4 cut(s) 107, 208, 266, 296
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 2 cut(s) 214, 220
HpyCH4III ACNGT 2 cut(s) 241, 292
HpyCH4V TGCA 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 123, 182
Hsp92II CATG 1 cut(s) 203
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 2 cut(s) 103, 385
LpnPI CCDG 7 cut(s) 92, 143, 186, 336, 369, 384, 392
Lsp1109I GCAGC 1 cut(s) 297
LweI GCATC 2 cut(s) 121, 168
MaeI CTAG 2 cut(s) 20, 296
MalI GATC 2 cut(s) 105, 387
MboI GATC 2 cut(s) 103, 385
MboII GAAGA 2 cut(s) 86, 242
MflI RGATCY 1 cut(s) 103
MlsI TGGCCA 1 cut(s) 252
MluCI AATT 1 cut(s) 269
MluNI TGGCCA 1 cut(s) 252
MnlI CCTC 2 cut(s) 82, 355
Mox20I TGGCCA 1 cut(s) 252
MscI TGGCCA 1 cut(s) 252
MseI TTAA 2 cut(s) 63, 138
Msp20I TGGCCA 1 cut(s) 252
MspI CCGG 2 cut(s) 323, 356
MspR9I CCNGG 1 cut(s) 323
NciI CCSGG 1 cut(s) 323
NdeII GATC 2 cut(s) 103, 385
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 2 cut(s) 354, 366
PkrI GCNGC 1 cut(s) 312
PspN4I GGNNCC 2 cut(s) 354, 366
PsuI RGATCY 1 cut(s) 103
SaqAI TTAA 2 cut(s) 63, 138
SatI GCNGC 1 cut(s) 311
Sau3AI GATC 2 cut(s) 103, 385
ScrFI CCNGG 1 cut(s) 323
SetI ASST 1 cut(s) 376
SfaNI GCATC 2 cut(s) 121, 168
SgrAI CRCCGGYG 1 cut(s) 355
Sse9I AATT 1 cut(s) 269
SsiI CCGC 1 cut(s) 359
SspI AATATT 1 cut(s) 31
SspMI CTAG 2 cut(s) 20, 296
StyD4I CCNGG 1 cut(s) 321
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 2 cut(s) 241, 292
TaqI TCGA 1 cut(s) 219
TasI AATT 1 cut(s) 269
Tru1I TTAA 2 cut(s) 63, 138
Tru9I TTAA 2 cut(s) 63, 138
TscAI CASTG 1 cut(s) 13
TseI GCWGC 1 cut(s) 310
TspRI CASTG 1 cut(s) 13
XapI RAATTY 1 cut(s) 269
XbaI TCTAGA 1 cut(s) 295
XspI CTAG 2 cut(s) 20, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.