Rroxscaffold_4G00316460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0004083
Physical Location & Seq
Reverse (-)
41320394 .. 41325484
5091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00316460.1

Sequence Viewer

Length: 237 bp
ATGCTTGACGGCCACTCTCGACGGTACCTTCAAGCCGACCGCCTCGTCTCGCTCAACAACTCGGCGGCCCTAATTTACGCCGACGGGTCGTTGATCCTCTTGGCACCAGCGGCCATCTCTAGTTTCGTACAAGAGCATGATTGCTGGTTGTTGAGTATACCGGGCGGCCACGTGAGTGTCGAAGCCATTGAAGCAAAGAGAAAGAAGTCAACAGGAGAAAAGTACACACCTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.5

Weight (kDa)

6.82

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 44
Acc65I GGTACC 1 cut(s) 24
AccB1I GGYRCC 2 cut(s) 24, 103
AccI GTMKAC 1 cut(s) 157
AciI CCGC 4 cut(s) 40, 65, 110, 165
AclWI GGATC 1 cut(s) 88
AcoI YGGCCR 3 cut(s) 10, 111, 166
AcvI CACGTG 1 cut(s) 172
AfaI GTAC 3 cut(s) 26, 129, 224
AgsI TTSAA 2 cut(s) 32, 191
AleI CACNNNNGTG 1 cut(s) 174
Alw26I GTCTC 1 cut(s) 52
AlwI GGATC 1 cut(s) 88
AoxI GGCC 4 cut(s) 10, 66, 111, 166
Asp718I GGTACC 1 cut(s) 24
AspS9I GGNCC 1 cut(s) 67
AsuC2I CCSGG 1 cut(s) 162
BanI GGYRCC 2 cut(s) 24, 103
BbrPI CACGTG 1 cut(s) 172
BccI CCATC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 25
BcnI CCSGG 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 52
BfaI CTAG 2 cut(s) 120, 235
BisI GCNGC 3 cut(s) 66, 111, 166
BlsI GCNGC 3 cut(s) 67, 112, 167
Bme1390I CCNGG 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 2 cut(s) 26, 105
BmrFI CCNGG 1 cut(s) 162
BpuMI CCSGG 1 cut(s) 162
BsaAI YACGTR 1 cut(s) 172
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 4 cut(s) 12, 68, 113, 168
BshNI GGYRCC 2 cut(s) 24, 103
BsiEI CGRYCG 1 cut(s) 40
BsiSI CCGG 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 52
BsmBI CGTCTC 1 cut(s) 52
BsnI GGCC 4 cut(s) 12, 68, 113, 168
Bsp143I GATC 1 cut(s) 93
BspACI CCGC 4 cut(s) 40, 65, 110, 165
BspANI GGCC 4 cut(s) 12, 68, 113, 168
BspLI GGNNCC 2 cut(s) 26, 105
BspPI GGATC 1 cut(s) 88
BspT107I GGYRCC 2 cut(s) 24, 103
BssMI GATC 1 cut(s) 93
BssNAI GTATAC 1 cut(s) 158
Bst1107I GTATAC 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 24
BstBAI YACGTR 1 cut(s) 172
BstKTI GATC 1 cut(s) 96
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 1 cut(s) 93
BstMCI CGRYCG 1 cut(s) 40
BstMWI GCNNNNNNNGC 2 cut(s) 110, 191
BstSCI CCNGG 1 cut(s) 160
BstZ17I GTATAC 1 cut(s) 158
BsuRI GGCC 4 cut(s) 12, 68, 113, 168
Cfr13I GGNCC 1 cut(s) 67
Csp6I GTAC 3 cut(s) 25, 128, 223
CviAII CATG 1 cut(s) 137
CviJI RGCY 6 cut(s) 12, 35, 68, 113, 168, 185
CviKI_1 RGCY 6 cut(s) 12, 35, 68, 113, 168, 185
CviQI GTAC 3 cut(s) 25, 128, 223
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
EaeI YGGCCR 3 cut(s) 10, 111, 166
Eco72I CACGTG 1 cut(s) 172
Esp3I CGTCTC 1 cut(s) 52
FaeI CATG 1 cut(s) 140
FaiI YATR 2 cut(s) 138, 158
FatI CATG 1 cut(s) 136
FblI GTMKAC 1 cut(s) 157
Fnu4HI GCNGC 3 cut(s) 66, 111, 166
Fsp4HI GCNGC 3 cut(s) 66, 111, 166
FspBI CTAG 2 cut(s) 120, 235
GluI GCNGC 3 cut(s) 66, 111, 166
HaeIII GGCC 4 cut(s) 12, 68, 113, 168
HapII CCGG 1 cut(s) 161
Hin1II CATG 1 cut(s) 140
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HpaII CCGG 1 cut(s) 161
Hpy166II GTNNAC 3 cut(s) 158, 210, 225
Hpy188III TCNNGA 1 cut(s) 18
Hpy8I GTNNAC 3 cut(s) 158, 210, 225
Hpy99I CGWCG 2 cut(s) 24, 86
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 1 cut(s) 24
HpyCH4IV ACGT 1 cut(s) 171
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 191
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 1 cut(s) 140
KpnI GGTACC 1 cut(s) 28
Kzo9I GATC 1 cut(s) 93
LpnPI CCDG 4 cut(s) 120, 130, 174, 198
MaeI CTAG 2 cut(s) 120, 235
MaeII ACGT 1 cut(s) 171
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MluCI AATT 1 cut(s) 72
MnlI CCTC 2 cut(s) 53, 107
MslI CAYNNNNRTG 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 162
MwoI GCNNNNNNNGC 2 cut(s) 110, 191
NciI CCSGG 1 cut(s) 162
NdeII GATC 1 cut(s) 93
NlaIII CATG 1 cut(s) 140
NlaIV GGNNCC 2 cut(s) 26, 105
NmeAIII GCCGAG 1 cut(s) 41
OliI CACNNNNGTG 1 cut(s) 174
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PkrI GCNGC 3 cut(s) 67, 112, 167
PmaCI CACGTG 1 cut(s) 172
PmlI CACGTG 1 cut(s) 172
Ppu21I YACGTR 1 cut(s) 172
PspCI CACGTG 1 cut(s) 172
PspN4I GGNNCC 2 cut(s) 26, 105
PspPI GGNCC 1 cut(s) 67
RsaI GTAC 3 cut(s) 26, 129, 224
RsaNI GTAC 3 cut(s) 25, 128, 223
RseI CAYNNNNRTG 1 cut(s) 174
SatI GCNGC 3 cut(s) 66, 111, 166
Sau3AI GATC 1 cut(s) 93
Sau96I GGNCC 1 cut(s) 67
ScrFI CCNGG 1 cut(s) 162
SetI ASST 3 cut(s) 30, 174, 232
SmiMI CAYNNNNRTG 1 cut(s) 174
Sse9I AATT 1 cut(s) 72
SsiI CCGC 4 cut(s) 40, 65, 110, 165
SspMI CTAG 2 cut(s) 120, 235
StyD4I CCNGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 24
TaiI ACGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 19, 180
TasI AATT 1 cut(s) 72
TatI WGTACW 1 cut(s) 222
TauI GCSGC 3 cut(s) 68, 113, 168
XmiI GTMKAC 1 cut(s) 157
XspI CTAG 2 cut(s) 120, 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.