Rmu_sc0011695.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011695.1
OG0004083
Physical Location & Seq
Forward (+)
7675 .. 7983
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011695.1_g000003.1.cds

Sequence Viewer

Length: 309 bp
atggcttccctagaactggacagccttcccttcggagaccatacgtactccgcctcgacgaccactctctcatggtactttcaggctgaacgcctcgtctcgctcaacaactcggcggccccaatttacgccgacgggtcgttgatcatcccagcaccagcaggttcttcgaccggtatcgggttcgattgggagcttcagccccaagctacttggtgccgtgaaaccctaagaagaagaagaagaaaatcccagaagaagaagaagaagaaggaagaaaaacaaatgaaaagaaaaggaaaaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.61

Weight (kDa)

10.06

Isoelectric Point (pI)

65.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 216
AciI CCGC 2 cut(s) 51, 116
AcuI CTGAAG 1 cut(s) 182
AfaI GTAC 2 cut(s) 47, 77
AfiI CCNNNNNNNGG 2 cut(s) 16, 180
AgeI ACCGGT 1 cut(s) 173
AluBI AGCT 2 cut(s) 196, 209
AluI AGCT 2 cut(s) 196, 209
Alw26I GTCTC 2 cut(s) 30, 103
AoxI GGCC 1 cut(s) 117
AsiGI ACCGGT 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 118
BanI GGYRCC 1 cut(s) 216
BceAI ACGGC 1 cut(s) 204
BcgI CGANNNNNNTGC 2 cut(s) 150, 184
BclI TGATCA 1 cut(s) 144
BcoDI GTCTC 2 cut(s) 30, 103
BfaI CTAG 1 cut(s) 11
BfuAI ACCTGC 1 cut(s) 152
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 2 cut(s) 120, 218
BsaAI YACGTR 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 30
BsaWI WCCGGW 1 cut(s) 173
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 180
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 2 cut(s) 16, 180
BseNI ACTGG 1 cut(s) 21
BseYI CCCAGC 1 cut(s) 151
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 1 cut(s) 119
BshNI GGYRCC 1 cut(s) 216
BshTI ACCGGT 1 cut(s) 173
BsiEI CGRYCG 1 cut(s) 174
BsiSI CCGG 1 cut(s) 174
BslI CCNNNNNNNGG 2 cut(s) 16, 180
BsmAI GTCTC 2 cut(s) 30, 103
BsmBI CGTCTC 1 cut(s) 103
BsnI GGCC 1 cut(s) 119
Bso31I GGTCTC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 144
BspACI CCGC 2 cut(s) 51, 116
BspANI GGCC 1 cut(s) 119
BspLI GGNNCC 2 cut(s) 120, 218
BspMI ACCTGC 1 cut(s) 152
BspT107I GGYRCC 1 cut(s) 216
BspTNI GGTCTC 1 cut(s) 30
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 1 cut(s) 21
BssAI RCCGGY 1 cut(s) 173
BssMI GATC 1 cut(s) 144
BstBAI YACGTR 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 230
BstF5I GGATG 1 cut(s) 147
BstKTI GATC 1 cut(s) 147
BstMAI GTCTC 2 cut(s) 30, 103
BstMBI GATC 1 cut(s) 144
BstMCI CGRYCG 1 cut(s) 174
BstSNI TACGTA 1 cut(s) 45
BsuRI GGCC 1 cut(s) 119
BtsCI GGATG 1 cut(s) 147
BveI ACCTGC 1 cut(s) 152
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 118
Csp6I GTAC 2 cut(s) 46, 76
CspAI ACCGGT 1 cut(s) 173
CviAII CATG 1 cut(s) 72
CviJI RGCY 7 cut(s) 5, 24, 86, 119, 196, 202, 209
CviKI_1 RGCY 7 cut(s) 5, 24, 86, 119, 196, 202, 209
CviQI GTAC 2 cut(s) 46, 76
DdeI CTNAG 1 cut(s) 230
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
EciI GGCGGA 1 cut(s) 40
Eco105I TACGTA 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 182
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 1 cut(s) 75
FaiI YATR 2 cut(s) 42, 73
FatI CATG 1 cut(s) 71
FbaI TGATCA 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 1 cut(s) 11
GluI GCNGC 1 cut(s) 117
GsaI CCCAGC 1 cut(s) 155
HaeIII GGCC 1 cut(s) 119
HapII CCGG 1 cut(s) 174
Hin1II CATG 1 cut(s) 75
HpaII CCGG 1 cut(s) 174
Hpy188I TCNGA 1 cut(s) 35
Hpy99I CGWCG 2 cut(s) 61, 137
HpyAV CCTTC 3 cut(s) 35, 40, 265
HpyCH4IV ACGT 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 230
HpySE526I ACGT 1 cut(s) 44
Hsp92II CATG 1 cut(s) 75
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 1 cut(s) 144
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 7 cut(s) 2, 68, 147, 165, 171, 187, 266
MaeI CTAG 1 cut(s) 11
MaeII ACGT 1 cut(s) 44
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MluCI AATT 1 cut(s) 123
MnlI CCTC 2 cut(s) 64, 104
MspI CCGG 1 cut(s) 174
NdeII GATC 1 cut(s) 144
NlaIII CATG 1 cut(s) 75
NlaIV GGNNCC 2 cut(s) 120, 218
NmeAIII GCCGAG 1 cut(s) 92
PinAI ACCGGT 1 cut(s) 173
PkrI GCNGC 1 cut(s) 118
Ppu21I YACGTR 1 cut(s) 45
PspFI CCCAGC 1 cut(s) 151
PspN4I GGNNCC 2 cut(s) 120, 218
PspPI GGNCC 1 cut(s) 118
RsaI GTAC 2 cut(s) 47, 77
RsaNI GTAC 2 cut(s) 46, 76
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 1 cut(s) 144
Sau96I GGNCC 1 cut(s) 118
SetI ASST 4 cut(s) 47, 166, 198, 211
SnaBI TACGTA 1 cut(s) 45
Sse9I AATT 1 cut(s) 123
SsiI CCGC 2 cut(s) 51, 116
SspMI CTAG 1 cut(s) 11
TaiI ACGT 1 cut(s) 47
TaqI TCGA 3 cut(s) 56, 170, 186
TasI AATT 1 cut(s) 123
TauI GCSGC 1 cut(s) 119
TspDTI ATGAA 1 cut(s) 302
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.