Pentatricopeptide repeat domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G42560 AT5G36300 AT5G36300 |
| fragaria_vesca | FvH4_7g33490 FvH4_7g33490 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 |
| malus_domestica | MD01G1232900.v1.1 |
| prunus_persica | Prupe.2G323300_v2.0.a1 |
| pyrus_communis | pycom01g24130 pycom07g27830 |
| rosa_chinensis | RchiOBHm_Chr1g0383591 RchiOBHm_Chr1g0383651 |
| rosa_laevigata | RLG00000026099 |
| rosa_multiflora | Rmu_sc0012471.1_g000010 Rmu_sc0012471.1_g000013 |
| rosa_roxburghii | Rroxscaffold_2G00116820 Rroxscaffold_2G00117690 Rroxscaffold_3G00229630 Rroxscaffold_4G00277240 Rroxscaffold_4G00302110 Rroxscaffold_5G00350700 Rroxscaffold_5G00350710 Rroxscaffold_7G00181950 |
| rosa_rugosa | Rorug01G0442100 Rorug01G0442200 |
| rosa_samantha | Rh1AG467600 Rh1AG467800 Rh1BG425300 Rh1CG437900 Rh1CG438100 Rh1DG458100 |
| rosa_wichuraiana | Rw1G040460 Rw1G040480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 38 |
| AcsI | RAATTY | 1 cut(s) | 250 |
| AfaI | GTAC | 3 cut(s) | 167, 718, 803 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 703 |
| AgsI | TTSAA | 3 cut(s) | 71, 250, 587 |
| AjiI | CACGTC | 1 cut(s) | 38 |
| AluBI | AGCT | 6 cut(s) | 104, 150, 311, 463, 653, 792 |
| AluI | AGCT | 6 cut(s) | 104, 150, 311, 463, 653, 792 |
| Alw21I | GWGCWC | 1 cut(s) | 561 |
| Alw26I | GTCTC | 3 cut(s) | 9, 89, 474 |
| AlwI | GGATC | 1 cut(s) | 38 |
| Ama87I | CYCGRG | 1 cut(s) | 738 |
| ApoI | RAATTY | 1 cut(s) | 250 |
| AseI | ATTAAT | 1 cut(s) | 618 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 151, 731 |
| AsuHPI | GGTGA | 2 cut(s) | 169, 686 |
| AvaI | CYCGRG | 1 cut(s) | 738 |
| Bbv12I | GWGCWC | 1 cut(s) | 561 |
| BccI | CCATC | 1 cut(s) | 562 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 89, 123 |
| BcoDI | GTCTC | 3 cut(s) | 9, 89, 474 |
| BfaI | CTAG | 2 cut(s) | 29, 81 |
| BfmI | CTRYAG | 1 cut(s) | 712 |
| BlpI | GCTNAGC | 1 cut(s) | 525 |
| BmeT110I | CYCGRG | 1 cut(s) | 738 |
| BmgBI | CACGTC | 1 cut(s) | 38 |
| BmsI | GCATC | 1 cut(s) | 97 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 525 |
| BpuEI | CTTGAG | 2 cut(s) | 456, 545 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 703 |
| BseGI | GGATG | 2 cut(s) | 361, 415 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 703 |
| BseMII | CTCAG | 2 cut(s) | 100, 539 |
| BseYI | CCCAGC | 1 cut(s) | 635 |
| BsiHKAI | GWGCWC | 1 cut(s) | 561 |
| BsiHKCI | CYCGRG | 1 cut(s) | 738 |
| BslFI | GGGAC | 1 cut(s) | 546 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 703 |
| BsmAI | GTCTC | 3 cut(s) | 9, 89, 474 |
| BsmFI | GGGAC | 1 cut(s) | 546 |
| BsmI | GAATGC | 1 cut(s) | 731 |
| BsoBI | CYCGRG | 1 cut(s) | 738 |
| Bsp1286I | GDGCHC | 1 cut(s) | 561 |
| Bsp1407I | TGTACA | 2 cut(s) | 165, 801 |
| Bsp143I | GATC | 2 cut(s) | 43, 809 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 525 |
| BspCNI | CTCAG | 2 cut(s) | 99, 538 |
| BspHI | TCATGA | 2 cut(s) | 118, 135 |
| BspPI | GGATC | 1 cut(s) | 38 |
| BsrGI | TGTACA | 2 cut(s) | 165, 801 |
| BssMI | GATC | 2 cut(s) | 43, 809 |
| Bst4CI | ACNGT | 3 cut(s) | 423, 550, 685 |
| Bst6I | CTCTTC | 3 cut(s) | 227, 321, 408 |
| BstAUI | TGTACA | 2 cut(s) | 165, 801 |
| BstDEI | CTNAG | 2 cut(s) | 86, 525 |
| BstEII | GGTNACC | 1 cut(s) | 706 |
| BstF5I | GGATG | 2 cut(s) | 361, 415 |
| BstKTI | GATC | 2 cut(s) | 46, 812 |
| BstMAI | GTCTC | 3 cut(s) | 9, 89, 474 |
| BstMBI | GATC | 2 cut(s) | 43, 809 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 488 |
| BstPI | GGTNACC | 1 cut(s) | 706 |
| BstSFI | CTRYAG | 1 cut(s) | 712 |
| BtrI | CACGTC | 1 cut(s) | 38 |
| BtsCI | GGATG | 2 cut(s) | 361, 415 |
| CciI | TCATGA | 2 cut(s) | 118, 135 |
| Csp6I | GTAC | 3 cut(s) | 166, 717, 802 |
| CviAII | CATG | 3 cut(s) | 119, 136, 646 |
| CviJI | RGCY | 6 cut(s) | 104, 150, 311, 463, 653, 792 |
| CviKI_1 | RGCY | 6 cut(s) | 104, 150, 311, 463, 653, 792 |
| CviQI | GTAC | 3 cut(s) | 166, 717, 802 |
| DdeI | CTNAG | 2 cut(s) | 86, 525 |
| DpnI | GATC | 2 cut(s) | 45, 811 |
| DpnII | GATC | 2 cut(s) | 43, 809 |
| Eam1104I | CTCTTC | 3 cut(s) | 227, 321, 408 |
| EarI | CTCTTC | 3 cut(s) | 227, 321, 408 |
| Eco88I | CYCGRG | 1 cut(s) | 738 |
| Eco91I | GGTNACC | 1 cut(s) | 706 |
| EcoO65I | GGTNACC | 1 cut(s) | 706 |
| EcoRI | GAATTC | 1 cut(s) | 250 |
| EcoT22I | ATGCAT | 1 cut(s) | 520 |
| FaeI | CATG | 3 cut(s) | 122, 139, 649 |
| FaqI | GGGAC | 1 cut(s) | 546 |
| FatI | CATG | 3 cut(s) | 118, 135, 645 |
| FauNDI | CATATG | 1 cut(s) | 520 |
| FokI | GGATG | 2 cut(s) | 368, 422 |
| FspBI | CTAG | 2 cut(s) | 29, 81 |
| GsaI | CCCAGC | 1 cut(s) | 639 |
| Hin1II | CATG | 3 cut(s) | 122, 139, 649 |
| HincII | GTYRAC | 1 cut(s) | 220 |
| HindII | GTYRAC | 1 cut(s) | 220 |
| HindIII | AAGCTT | 2 cut(s) | 309, 790 |
| HinfI | GANTC | 3 cut(s) | 94, 132, 691 |
| HpaI | GTTAAC | 1 cut(s) | 220 |
| HphI | GGTGA | 2 cut(s) | 169, 686 |
| Hpy166II | GTNNAC | 4 cut(s) | 35, 220, 719, 802 |
| Hpy188I | TCNGA | 2 cut(s) | 89, 814 |
| Hpy188III | TCNNGA | 7 cut(s) | 41, 98, 119, 136, 562, 768, 852 |
| Hpy8I | GTNNAC | 4 cut(s) | 35, 220, 719, 802 |
| HpyAV | CCTTC | 2 cut(s) | 84, 495 |
| HpyCH4III | ACNGT | 3 cut(s) | 423, 550, 685 |
| HpyCH4IV | ACGT | 3 cut(s) | 37, 57, 386 |
| HpyCH4V | TGCA | 4 cut(s) | 504, 518, 540, 833 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 488 |
| HpyF3I | CTNAG | 2 cut(s) | 86, 525 |
| HpySE526I | ACGT | 3 cut(s) | 37, 57, 386 |
| Hsp92II | CATG | 3 cut(s) | 122, 139, 649 |
| KspAI | GTTAAC | 1 cut(s) | 220 |
| Kzo9I | GATC | 2 cut(s) | 43, 809 |
| LmnI | GCTCC | 1 cut(s) | 487 |
| LpnPI | CCDG | 6 cut(s) | 54, 515, 621, 764, 781, 781 |
| LweI | GCATC | 1 cut(s) | 97 |
| MaeI | CTAG | 2 cut(s) | 29, 81 |
| MaeII | ACGT | 3 cut(s) | 37, 57, 386 |
| MaeIII | GTNAC | 2 cut(s) | 417, 706 |
| MalI | GATC | 2 cut(s) | 45, 811 |
| MboI | GATC | 2 cut(s) | 43, 809 |
| MboII | GAAGA | 6 cut(s) | 241, 244, 280, 316, 338, 425 |
| MhlI | GDGCHC | 1 cut(s) | 561 |
| MluCI | AATT | 3 cut(s) | 250, 493, 825 |
| MlyI | GAGTC | 1 cut(s) | 88 |
| MmeI | TCCRAC | 1 cut(s) | 387 |
| MnlI | CCTC | 6 cut(s) | 20, 57, 193, 228, 430, 571 |
| Mph1103I | ATGCAT | 1 cut(s) | 520 |
| MroXI | GAANNNNTTC | 2 cut(s) | 151, 731 |
| MseI | TTAA | 3 cut(s) | 219, 618, 675 |
| MslI | CAYNNNNRTG | 1 cut(s) | 699 |
| Mva1269I | GAATGC | 1 cut(s) | 731 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 488 |
| NdeI | CATATG | 1 cut(s) | 520 |
| NdeII | GATC | 2 cut(s) | 43, 809 |
| NlaIII | CATG | 3 cut(s) | 122, 139, 649 |
| NsiI | ATGCAT | 1 cut(s) | 520 |
| PaeR7I | CTCGAG | 1 cut(s) | 738 |
| PagI | TCATGA | 2 cut(s) | 118, 135 |
| PctI | GAATGC | 1 cut(s) | 731 |
| PdmI | GAANNNNTTC | 2 cut(s) | 151, 731 |
| PfeI | GAWTC | 2 cut(s) | 132, 691 |
| PleI | GAGTC | 1 cut(s) | 88 |
| PpsI | GAGTC | 1 cut(s) | 88 |
| PshBI | ATTAAT | 1 cut(s) | 618 |
| PspEI | GGTNACC | 1 cut(s) | 706 |
| PspFI | CCCAGC | 1 cut(s) | 635 |
| PspXI | VCTCGAGB | 1 cut(s) | 738 |
| RsaI | GTAC | 3 cut(s) | 167, 718, 803 |
| RsaNI | GTAC | 3 cut(s) | 166, 717, 802 |
| RseI | CAYNNNNRTG | 1 cut(s) | 699 |
| SaqAI | TTAA | 3 cut(s) | 219, 618, 675 |
| Sau3AI | GATC | 2 cut(s) | 43, 809 |
| SchI | GAGTC | 1 cut(s) | 88 |
| SduI | GDGCHC | 1 cut(s) | 561 |
| SfaNI | GCATC | 1 cut(s) | 97 |
| SfcI | CTRYAG | 1 cut(s) | 712 |
| Sfr274I | CTCGAG | 1 cut(s) | 738 |
| SlaI | CTCGAG | 1 cut(s) | 738 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 699 |
| SmlI | CTYRAG | 3 cut(s) | 471, 560, 738 |
| SmoI | CTYRAG | 3 cut(s) | 471, 560, 738 |
| Sse9I | AATT | 3 cut(s) | 250, 493, 825 |
| SspI | AATATT | 1 cut(s) | 775 |
| SspMI | CTAG | 2 cut(s) | 29, 81 |
| TaaI | ACNGT | 3 cut(s) | 423, 550, 685 |
| TaiI | ACGT | 3 cut(s) | 40, 60, 389 |
| TaqI | TCGA | 4 cut(s) | 99, 184, 435, 739 |
| TasI | AATT | 3 cut(s) | 250, 493, 825 |
| TatI | WGTACW | 3 cut(s) | 165, 716, 801 |
| TfiI | GAWTC | 2 cut(s) | 132, 691 |
| Tru1I | TTAA | 3 cut(s) | 219, 618, 675 |
| Tru9I | TTAA | 3 cut(s) | 219, 618, 675 |
| TspDTI | ATGAA | 7 cut(s) | 107, 124, 135, 242, 426, 740, 768 |
| VspI | ATTAAT | 1 cut(s) | 618 |
| XapI | RAATTY | 1 cut(s) | 250 |
| XhoI | CTCGAG | 1 cut(s) | 738 |
| XmnI | GAANNNNTTC | 2 cut(s) | 151, 731 |
| XspI | CTAG | 2 cut(s) | 29, 81 |
| Zsp2I | ATGCAT | 1 cut(s) | 520 |