Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002642

Physical Location & Seq

Genomic Coordinates Reverse (-)

53951906 .. 53953977

Gene Structure 2072 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0442100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCAGAGGCAGAGGAACCCAAGAAGCAGGTACTAGAATCCGAAAAACCCTCCGATCTTCCTCCAGCTCCGGCCACGGCTACAACATCATCAGAAGAGAAGCCGGCGGTTGTGGAAGCTCCGAAAGAGGAGTACAAAGAGAAATCAGAAGAGAAGGCGCCAAAGCCTGAAGATGAGTCGAAAGCTCTTGCTATTGCTGAGAAGCCTAGTGAACCAGCAGAAGAGAAAAGTAAGGAGGGTTCAGTGGATCGAGATACTGTGCTTGCAAAAGTTGCAACTGAGAAAAGAATATCACTTATCAATGCATGGGAAGAAAGTGAAAAATCAAAAGTAGAGAACAAAGCTCATAAAAAGTTATCTGTTGTTGGGTCATGGGAGAACACCAAGAAGGCAGATGTGGAGGCTGAGCTAAAAAAGATTGAGGAAAAATTGGAGAAGAAGAAGGCAGAGTATGTGGAGCAGATGAAAAACAAGATAGCTTTGATCCACAAGGCTGCAGAGGAAAAGAGGGCACTGATTGAAGCTAAGCGTGCTGAAGATCTTCTCAAGGCAGAGGAAACTGCCGCTAAATACCGAGCCACCGGAAAAGCTCCTAAGAAGCTCCTTGGTTTTCTTTCATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

207

Amino Acids

22.98

Weight (kDa)

6.01

Isoelectric Point (pI)

56.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Remorin_N	PF03766	32 - 91	2.6e-10	Remorin, N-terminal region
Remorin_C	PF03763	95 - 200	1.5e-34	Remorin, C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42560 AT5G36300 AT5G36300
fragaria_vesca	FvH4_7g33490 FvH4_7g33490 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530
malus_domestica	MD01G1232900.v1.1
prunus_persica	Prupe.2G323300_v2.0.a1
pyrus_communis	pycom01g24130 pycom07g27830
rosa_chinensis	RchiOBHm_Chr1g0383591 RchiOBHm_Chr1g0383651
rosa_laevigata	RLG00000026099
rosa_multiflora	Rmu_sc0012471.1_g000010 Rmu_sc0012471.1_g000013
rosa_roxburghii	Rroxscaffold_2G00116820 Rroxscaffold_2G00117690 Rroxscaffold_3G00229630 Rroxscaffold_4G00277240 Rroxscaffold_4G00302110 Rroxscaffold_5G00350700 Rroxscaffold_5G00350710 Rroxscaffold_7G00181950
rosa_rugosa	Rorug01G0442100 Rorug01G0442200
rosa_samantha	Rh1AG467600 Rh1AG467800 Rh1BG425300 Rh1CG437900 Rh1CG438100 Rh1DG458100
rosa_wichuraiana	Rw1G040460 Rw1G040480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	19
AccB1I	GGYRCC	1 cut(s)	157
AciI	CCGC	2 cut(s)	107, 564
AclWI	GGATC	2 cut(s)	255, 478
AcoI	YGGCCR	1 cut(s)	72
AcuI	CTGAAG	2 cut(s)	189, 555
AcyI	GRCGYC	1 cut(s)	158
AfaI	GTAC	2 cut(s)	33, 134
AgsI	TTSAA	1 cut(s)	521
AluBI	AGCT	9 cut(s)	68, 119, 185, 344, 409, 479, 524, 590, 601
AluI	AGCT	9 cut(s)	68, 119, 185, 344, 409, 479, 524, 590, 601
AlwI	GGATC	2 cut(s)	255, 478
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	1 cut(s)	494
Asp700I	GAANNNNTTC	1 cut(s)	540
AspLEI	GCGC	1 cut(s)	160
BaeGI	GKGCMC	1 cut(s)	514
BanI	GGYRCC	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	481
BceAI	ACGGC	1 cut(s)	93
BfaI	CTAG	2 cut(s)	35, 207
BfmI	CTRYAG	1 cut(s)	495
BfoI	RGCGCY	1 cut(s)	161
BfuAI	ACCTGC	1 cut(s)	19
BglII	AGATCT	1 cut(s)	538
BisI	GCNGC	2 cut(s)	495, 564
BlpI	GCTNAGC	2 cut(s)	405, 525
BlsI	GCNGC	2 cut(s)	496, 565
BmiI	GGNNCC	2 cut(s)	18, 159
BpmI	CTGGAG	1 cut(s)	48
Bpu1102I	GCTNAGC	2 cut(s)	405, 525
BpuEI	CTTGAG	1 cut(s)	530
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	75, 604
BsaWI	WCCGGW	1 cut(s)	581
Bse118I	RCCGGY	1 cut(s)	103
BseDI	CCNNGG	2 cut(s)	75, 604
BseMII	CTCAG	3 cut(s)	189, 270, 396
BseRI	GAGGAG	1 cut(s)	143
BseSI	GKGCMC	1 cut(s)	514
BseXI	GCAGC	1 cut(s)	481
BshFI	GGCC	1 cut(s)	74
BshNI	GGYRCC	1 cut(s)	157
BsiSI	CCGG	3 cut(s)	71, 104, 582
BsnI	GGCC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	514
Bsp143I	GATC	4 cut(s)	55, 247, 483, 538
Bsp1720I	GCTNAGC	2 cut(s)	405, 525
BspACI	CCGC	2 cut(s)	107, 564
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	3 cut(s)	190, 271, 397
BspLI	GGNNCC	2 cut(s)	18, 159
BspMAI	CTGCAG	1 cut(s)	499
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	2 cut(s)	255, 478
BspT107I	GGYRCC	1 cut(s)	157
BsrFI	RCCGGY	1 cut(s)	103
BssAI	RCCGGY	1 cut(s)	103
BssECI	CCNNGG	2 cut(s)	75, 604
BssMI	GATC	4 cut(s)	55, 247, 483, 538
BssNI	GRCGYC	1 cut(s)	158
BssT1I	CCWWGG	1 cut(s)	604
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	3 cut(s)	90, 144, 216
BstACI	GRCGYC	1 cut(s)	158
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstC8I	GCNNGC	3 cut(s)	105, 264, 531
BstDEI	CTNAG	5 cut(s)	198, 279, 405, 525, 594
BstDSI	CCRYGG	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	4 cut(s)	58, 250, 486, 541
BstMBI	GATC	4 cut(s)	55, 247, 483, 538
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 530
BstSFI	CTRYAG	1 cut(s)	495
BstSLI	GKGCMC	1 cut(s)	514
BstV1I	GCAGC	1 cut(s)	481
BstX2I	RGATCY	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	538
BsuRI	GGCC	1 cut(s)	74
BtgI	CCRYGG	1 cut(s)	75
BtsIMutI	CAGTG	2 cut(s)	249, 512
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	3 cut(s)	105, 264, 531
CfoI	GCGC	1 cut(s)	160
Cfr10I	RCCGGY	1 cut(s)	103
Csp6I	GTAC	2 cut(s)	32, 133
CviAII	CATG	3 cut(s)	306, 372, 618
CviQI	GTAC	2 cut(s)	32, 133
DdeI	CTNAG	5 cut(s)	198, 279, 405, 525, 594
DinI	GGCGCC	1 cut(s)	159
DpnI	GATC	4 cut(s)	57, 249, 485, 540
DpnII	GATC	4 cut(s)	55, 247, 483, 538
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	3 cut(s)	90, 144, 216
EarI	CTCTTC	3 cut(s)	90, 144, 216
Eco130I	CCWWGG	1 cut(s)	604
Eco57I	CTGAAG	2 cut(s)	189, 555
EcoT14I	CCWWGG	1 cut(s)	604
EcoT22I	ATGCAT	1 cut(s)	307
EgeI	GGCGCC	1 cut(s)	159
EheI	GGCGCC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	604
FaeI	CATG	3 cut(s)	309, 375, 621
FaiI	YATR	5 cut(s)	307, 348, 373, 453, 619
FatI	CATG	3 cut(s)	305, 371, 617
Fnu4HI	GCNGC	2 cut(s)	495, 564
Fsp4HI	GCNGC	2 cut(s)	495, 564
FspBI	CTAG	2 cut(s)	35, 207
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	2 cut(s)	495, 564
GsuI	CTGGAG	1 cut(s)	48
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	3 cut(s)	71, 104, 582
HhaI	GCGC	1 cut(s)	160
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	3 cut(s)	309, 375, 621
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	2 cut(s)	38, 176
HpaII	CCGG	3 cut(s)	71, 104, 582
Hpy166II	GTNNAC	1 cut(s)	212
Hpy188I	TCNGA	5 cut(s)	43, 55, 94, 123, 148
Hpy188III	TCNNGA	1 cut(s)	251
Hpy8I	GTNNAC	1 cut(s)	212
HpyAV	CCTTC	3 cut(s)	148, 382, 436
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4V	TGCA	4 cut(s)	266, 275, 305, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 530
HpyF3I	CTNAG	5 cut(s)	198, 279, 405, 525, 594
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	3 cut(s)	309, 375, 621
HspAI	GCGC	1 cut(s)	158
KasI	GGCGCC	1 cut(s)	157
KroI	GCCGGC	1 cut(s)	103
KroNI	GCCGGC	1 cut(s)	105
Kzo9I	GATC	4 cut(s)	55, 247, 483, 538
LmnI	GCTCC	5 cut(s)	73, 124, 457, 595, 606
LpnPI	CCDG	7 cut(s)	14, 78, 84, 117, 180, 228, 595
Lsp1109I	GCAGC	1 cut(s)	481
MaeI	CTAG	2 cut(s)	35, 207
MalI	GATC	4 cut(s)	57, 249, 485, 540
MboI	GATC	4 cut(s)	55, 247, 483, 538
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	1 cut(s)	514
MluCI	AATT	1 cut(s)	428
Mly113I	GGCGCC	1 cut(s)	158
MlyI	GAGTC	1 cut(s)	185
Mph1103I	ATGCAT	1 cut(s)	307
MroNI	GCCGGC	1 cut(s)	103
MroXI	GAANNNNTTC	1 cut(s)	540
MspI	CCGG	3 cut(s)	71, 104, 582
MwoI	GCNNNNNNNGC	2 cut(s)	272, 530
NaeI	GCCGGC	1 cut(s)	105
NarI	GGCGCC	1 cut(s)	158
NdeII	GATC	4 cut(s)	55, 247, 483, 538
NgoMIV	GCCGGC	1 cut(s)	103
NlaIII	CATG	3 cut(s)	309, 375, 621
NlaIV	GGNNCC	2 cut(s)	18, 159
NsiI	ATGCAT	1 cut(s)	307
PdiI	GCCGGC	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	540
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	2 cut(s)	496, 565
PleI	GAGTC	1 cut(s)	184
PluTI	GGCGCC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	184
PspN4I	GGNNCC	2 cut(s)	18, 159
PsrI	GAACNNNNNNTAC	2 cut(s)	223, 255
PstI	CTGCAG	1 cut(s)	499
PsuI	RGATCY	1 cut(s)	538
RsaI	GTAC	2 cut(s)	33, 134
RsaNI	GTAC	2 cut(s)	32, 133
SatI	GCNGC	2 cut(s)	495, 564
Sau3AI	GATC	4 cut(s)	55, 247, 483, 538
SchI	GAGTC	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	514
SfcI	CTRYAG	1 cut(s)	495
SfoI	GGCGCC	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	545
SmoI	CTYRAG	1 cut(s)	545
Sse9I	AATT	1 cut(s)	428
SsiI	CCGC	2 cut(s)	107, 564
SspDI	GGCGCC	1 cut(s)	157
SspMI	CTAG	2 cut(s)	35, 207
StyI	CCWWGG	1 cut(s)	604
TaaI	ACNGT	1 cut(s)	259
TaqI	TCGA	2 cut(s)	179, 250
TasI	AATT	1 cut(s)	428
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	1 cut(s)	566
TfiI	GAWTC	1 cut(s)	38
TscAI	CASTG	2 cut(s)	249, 519
TseI	GCWGC	1 cut(s)	494
TspDTI	ATGAA	2 cut(s)	479, 606
TspRI	CASTG	2 cut(s)	249, 519
XmnI	GAANNNNTTC	1 cut(s)	540
XspI	CTAG	2 cut(s)	35, 207
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.