Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002642

Physical Location & Seq

Genomic Coordinates Forward (+)

22491041 .. 22495611

Gene Structure 4571 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00302110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGATGAACAGAATTCCAAGCTCCAACAAGAACCCGAGTCCAACACCACCACCCATCGCTCCGCCTCCACACACATACCTCAAGATCAGCTCGGCGCTACTCCCGGAATCCTTCGATCACCGGCCACGATCCGAGCTCAAGTCGCTACTAGAACCGGAGATCTGCTGCCAAACGGTTGCGAAGCATACGTTACTTACGGAGAAGTAGCGCTCTCCGACGCGGCGGCAAGGTTAGGGCCTTCAAATGCTGCTCGATGCCATCACCTTCGGTGTCATCGTCCTCGTGTAGCTCCTTCACTTCTCTCTCTCGTTCTGTCCAACCGGTCTCAATATACTCGAGAAACACAAGCTGCATGCTTCTCTAACTCGCTCAAAATCCCAGCCCGGGATGTCAAAGAATTCAACTTTACGCCGGATGACGAAACTCATCCGATTCTTGACTACCCAAATGTTCCAACTCTCGGAGAGAAATTTCCCTTGAGTTATACAACAAATTGTTACAAGATTTTTGTAGAGTTGGGCATGTTGTTAAGGCCATGGTTCTTCTTGCTCGAATGGAAGCTCTTGGCTTTCGACCCAATTCAATATCCTACACTCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

200

Amino Acids

22.4

Weight (kDa)

6.58

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42560 AT5G36300 AT5G36300
fragaria_vesca	FvH4_7g33490 FvH4_7g33490 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530
malus_domestica	MD01G1232900.v1.1
prunus_persica	Prupe.2G323300_v2.0.a1
pyrus_communis	pycom01g24130 pycom07g27830
rosa_chinensis	RchiOBHm_Chr1g0383591 RchiOBHm_Chr1g0383651
rosa_laevigata	RLG00000026099
rosa_multiflora	Rmu_sc0012471.1_g000010 Rmu_sc0012471.1_g000013
rosa_roxburghii	Rroxscaffold_2G00116820 Rroxscaffold_2G00117690 Rroxscaffold_3G00229630 Rroxscaffold_4G00277240 Rroxscaffold_4G00302110 Rroxscaffold_5G00350700 Rroxscaffold_5G00350710 Rroxscaffold_7G00181950
rosa_rugosa	Rorug01G0442100 Rorug01G0442200
rosa_samantha	Rh1AG467600 Rh1AG467800 Rh1BG425300 Rh1CG437900 Rh1CG438100 Rh1DG458100
rosa_wichuraiana	Rw1G040460 Rw1G040480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	221
AciI	CCGC	3 cut(s)	63, 221, 224
AclWI	GGATC	1 cut(s)	124
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	3 cut(s)	13, 398, 470
AfeI	AGCGCT	1 cut(s)	210
AfiI	CCNNNNNNNGG	2 cut(s)	385, 461
AgeI	ACCGGT	1 cut(s)	321
AgsI	TTSAA	3 cut(s)	243, 403, 584
AluBI	AGCT	6 cut(s)	22, 91, 137, 290, 350, 562
AluI	AGCT	6 cut(s)	22, 91, 137, 290, 350, 562
Alw21I	GWGCWC	1 cut(s)	139
Alw26I	GTCTC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	124
Ama87I	CYCGRG	3 cut(s)	35, 336, 384
Aor51HI	AGCGCT	1 cut(s)	210
AoxI	GGCC	3 cut(s)	123, 236, 533
ApeKI	GCWGC	3 cut(s)	166, 248, 350
ApoI	RAATTY	3 cut(s)	13, 398, 470
AsiGI	ACCGGT	1 cut(s)	321
AspLEI	GCGC	2 cut(s)	98, 211
AspS9I	GGNCC	1 cut(s)	236
AsuC2I	CCSGG	3 cut(s)	105, 385, 386
AsuHPI	GGTGA	2 cut(s)	111, 254
AvaI	CYCGRG	3 cut(s)	35, 336, 384
BanII	GRGCYC	1 cut(s)	139
BauI	CACGAG	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	3 cut(s)	153, 235, 337
BccI	CCATC	2 cut(s)	63, 267
BcnI	CCSGG	3 cut(s)	105, 385, 386
BcoDI	GTCTC	1 cut(s)	330
BfaI	CTAG	1 cut(s)	150
BfoI	RGCGCY	2 cut(s)	99, 212
BglII	AGATCT	1 cut(s)	160
BisI	GCNGC	5 cut(s)	167, 222, 225, 249, 351
BlsI	GCNGC	5 cut(s)	168, 223, 226, 250, 352
Bme1390I	CCNGG	3 cut(s)	105, 385, 386
BmeT110I	CYCGRG	3 cut(s)	35, 336, 384
BmgT120I	GGNCC	1 cut(s)	236
BmrFI	CCNGG	3 cut(s)	105, 385, 386
BmsI	GCATC	1 cut(s)	245
BpuEI	CTTGAG	3 cut(s)	66, 123, 499
BpuMI	CCSGG	3 cut(s)	105, 385, 386
BsaI	GGTCTC	1 cut(s)	330
BsaJI	CCNNGG	2 cut(s)	384, 536
BsaWI	WCCGGW	2 cut(s)	155, 321
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 461
Bse118I	RCCGGY	2 cut(s)	121, 321
BseDI	CCNNGG	2 cut(s)	384, 536
BseGI	GGATG	4 cut(s)	10, 394, 421, 427
BseLI	CCNNNNNNNGG	2 cut(s)	385, 461
BseXI	GCAGC	3 cut(s)	153, 235, 337
BseYI	CCCAGC	1 cut(s)	379
Bsh1236I	CGCG	1 cut(s)	221
BshFI	GGCC	3 cut(s)	125, 238, 535
BshTI	ACCGGT	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	139
BsiHKCI	CYCGRG	3 cut(s)	35, 336, 384
BsiSI	CCGG	6 cut(s)	105, 122, 156, 322, 385, 413
BslI	CCNNNNNNNGG	2 cut(s)	385, 461
BsmAI	GTCTC	1 cut(s)	330
BsnI	GGCC	3 cut(s)	125, 238, 535
Bso31I	GGTCTC	1 cut(s)	330
BsoBI	CYCGRG	3 cut(s)	35, 336, 384
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	4 cut(s)	85, 116, 129, 160
Bsp19I	CCATGG	1 cut(s)	536
BspACI	CCGC	3 cut(s)	63, 221, 224
BspANI	GGCC	3 cut(s)	125, 238, 535
BspFNI	CGCG	1 cut(s)	221
BspPI	GGATC	1 cut(s)	124
BspTNI	GGTCTC	1 cut(s)	330
BsrFI	RCCGGY	2 cut(s)	121, 321
BssAI	RCCGGY	2 cut(s)	121, 321
BssECI	CCNNGG	2 cut(s)	384, 536
BssMI	GATC	4 cut(s)	85, 116, 129, 160
BssSI	CACGAG	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	536
Bst2BI	CACGAG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	355
BstDSI	CCRYGG	1 cut(s)	536
BstF5I	GGATG	4 cut(s)	10, 394, 421, 427
BstFNI	CGCG	1 cut(s)	221
BstH2I	RGCGCY	2 cut(s)	99, 212
BstHHI	GCGC	2 cut(s)	98, 211
BstKTI	GATC	4 cut(s)	88, 119, 132, 163
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	4 cut(s)	85, 116, 129, 160
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNSI	RCATGY	2 cut(s)	357, 526
BstSCI	CCNGG	3 cut(s)	103, 383, 384
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	3 cut(s)	153, 235, 337
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BsuRI	GGCC	3 cut(s)	125, 238, 535
BtgI	CCRYGG	1 cut(s)	536
BtgZI	GCGATG	1 cut(s)	41
BtsCI	GGATG	4 cut(s)	10, 394, 421, 427
Cac8I	GCNNGC	1 cut(s)	355
CfoI	GCGC	2 cut(s)	98, 211
Cfr10I	RCCGGY	2 cut(s)	121, 321
Cfr13I	GGNCC	1 cut(s)	236
Cfr9I	CCCGGG	1 cut(s)	384
CseI	GACGC	1 cut(s)	227
CspAI	ACCGGT	1 cut(s)	321
CviAII	CATG	3 cut(s)	354, 523, 537
DpnI	GATC	4 cut(s)	87, 118, 131, 162
DpnII	GATC	4 cut(s)	85, 116, 129, 160
EaeI	YGGCCR	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	536
Eco24I	GRGCYC	1 cut(s)	139
Eco31I	GGTCTC	1 cut(s)	330
Eco47III	AGCGCT	1 cut(s)	210
Eco53kI	GAGCTC	1 cut(s)	137
Eco88I	CYCGRG	3 cut(s)	35, 336, 384
EcoICRI	GAGCTC	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	236
EcoRI	GAATTC	2 cut(s)	13, 398
EcoT14I	CCWWGG	1 cut(s)	536
EcoT38I	GRGCYC	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	536
FaeI	CATG	3 cut(s)	357, 526, 540
FaiI	YATR	7 cut(s)	77, 187, 333, 355, 486, 524, 538
FatI	CATG	3 cut(s)	353, 522, 536
Fnu4HI	GCNGC	5 cut(s)	167, 222, 225, 249, 351
FokI	GGATG	4 cut(s)	17, 401, 414, 428
FriOI	GRGCYC	1 cut(s)	139
Fsp4HI	GCNGC	5 cut(s)	167, 222, 225, 249, 351
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	2 cut(s)	97, 210
GluI	GCNGC	5 cut(s)	167, 222, 225, 249, 351
GsaI	CCCAGC	1 cut(s)	383
HaeII	RGCGCY	2 cut(s)	99, 212
HaeIII	GGCC	3 cut(s)	125, 238, 535
HapII	CCGG	6 cut(s)	105, 122, 156, 322, 385, 413
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	2 cut(s)	98, 211
Hin1II	CATG	3 cut(s)	357, 526, 540
Hin6I	GCGC	2 cut(s)	96, 209
HinP1I	GCGC	2 cut(s)	96, 209
HinfI	GANTC	3 cut(s)	38, 108, 433
HpaII	CCGG	6 cut(s)	105, 122, 156, 322, 385, 413
HphI	GGTGA	2 cut(s)	111, 254
Hpy188I	TCNGA	4 cut(s)	134, 217, 432, 464
Hpy188III	TCNNGA	3 cut(s)	83, 338, 437
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	4 cut(s)	122, 249, 275, 303
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	1 cut(s)	353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	3 cut(s)	357, 526, 540
HspAI	GCGC	2 cut(s)	96, 209
Kzo9I	GATC	4 cut(s)	85, 116, 129, 160
LmnI	GCTCC	3 cut(s)	27, 65, 295
LpnPI	CCDG	7 cut(s)	118, 135, 169, 335, 393, 398, 426
Lsp1109I	GCAGC	3 cut(s)	153, 235, 337
LweI	GCATC	1 cut(s)	245
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	2 cut(s)	190, 497
MalI	GATC	4 cut(s)	87, 118, 131, 162
MboI	GATC	4 cut(s)	85, 116, 129, 160
MboII	GAAGA	1 cut(s)	535
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	5 cut(s)	13, 398, 470, 493, 579
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	5 cut(s)	49, 66, 240, 342, 479
MnlI	CCTC	3 cut(s)	76, 90, 291
MseI	TTAA	2 cut(s)	530, 601
MspI	CCGG	6 cut(s)	105, 122, 156, 322, 385, 413
MspR9I	CCNGG	3 cut(s)	105, 385, 386
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	1 cut(s)	143
NciI	CCSGG	3 cut(s)	105, 385, 386
NcoI	CCATGG	1 cut(s)	536
NdeII	GATC	4 cut(s)	85, 116, 129, 160
NlaIII	CATG	3 cut(s)	357, 526, 540
NmeAIII	GCCGAG	1 cut(s)	72
NspI	RCATGY	2 cut(s)	357, 526
PaeI	GCATGC	1 cut(s)	357
PaeR7I	CTCGAG	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	1 cut(s)	274
PfeI	GAWTC	2 cut(s)	108, 433
PfoI	TCCNGGA	1 cut(s)	103
PinAI	ACCGGT	1 cut(s)	321
PkrI	GCNGC	5 cut(s)	168, 223, 226, 250, 352
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
Psp124BI	GAGCTC	1 cut(s)	139
PspFI	CCCAGC	1 cut(s)	379
PspPI	GGNCC	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	160
SacI	GAGCTC	1 cut(s)	139
SaqAI	TTAA	2 cut(s)	530, 601
SatI	GCNGC	5 cut(s)	167, 222, 225, 249, 351
Sau3AI	GATC	4 cut(s)	85, 116, 129, 160
Sau96I	GGNCC	1 cut(s)	236
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	3 cut(s)	105, 385, 386
SduI	GDGCHC	1 cut(s)	139
SfaNI	GCATC	1 cut(s)	245
Sfr274I	CTCGAG	1 cut(s)	336
SlaI	CTCGAG	1 cut(s)	336
SmaI	CCCGGG	1 cut(s)	386
SmlI	CTYRAG	4 cut(s)	81, 138, 336, 478
SmoI	CTYRAG	4 cut(s)	81, 138, 336, 478
SphI	GCATGC	1 cut(s)	357
Sse9I	AATT	5 cut(s)	13, 398, 470, 493, 579
SsiI	CCGC	3 cut(s)	63, 221, 224
SspMI	CTAG	1 cut(s)	150
SstI	GAGCTC	1 cut(s)	139
StyD4I	CCNGG	3 cut(s)	103, 383, 384
StyI	CCWWGG	1 cut(s)	536
TaaI	ACNGT	1 cut(s)	176
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	5 cut(s)	115, 253, 337, 552, 573
TasI	AATT	5 cut(s)	13, 398, 470, 493, 579
TauI	GCSGC	2 cut(s)	224, 227
TfiI	GAWTC	2 cut(s)	108, 433
Tru1I	TTAA	2 cut(s)	530, 601
Tru9I	TTAA	2 cut(s)	530, 601
TseI	GCWGC	3 cut(s)	166, 248, 350
TspDTI	ATGAA	1 cut(s)	21
TspGWI	ACGGA	1 cut(s)	213
TspMI	CCCGGG	1 cut(s)	384
XapI	RAATTY	3 cut(s)	13, 398, 470
XceI	RCATGY	2 cut(s)	357, 526
XhoI	CTCGAG	1 cut(s)	336
XmaI	CCCGGG	1 cut(s)	384
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.