Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002642

Physical Location & Seq

Genomic Coordinates Reverse (-)

25102457 .. 25106341

Gene Structure 3885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00350700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGGTGATGTGGGTACCGAGAGAAATCAAGAAACTTATGAGATTTTACTTGATTACTATGTCGTGGCTGGTTACGAGGATGGCTCCATGCTTTGGTGGGATATTAGAAATCCGGGTGTTCCGGTTACATCCGAAATGGTGGGAGAGCCACAGTCCTTTGGAGAAGTAAGACCTCACAAGAAGGTTTTTAAATCTACTTCTACAAGAAGTTCAAGTGTGCCCGATAAGAGAAGAGAAGTCACATTATCCTTTGCTAAATGGTATATTTGGGAAAGACAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006282 GO:0006810 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0009555 GO:0009636 GO:0009663 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010162 GO:0010431 GO:0010496 GO:0010497 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031461 GO:0031570 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034330 GO:0035670 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045216 GO:0045786 GO:0045787 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048609 GO:0048700 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0071156 GO:0071158 GO:0071695 GO:0071840 GO:0072718 GO:0080008 GO:0080090 GO:0080134 GO:0080135 GO:0090068 GO:0090567 GO:0097327 GO:0097439 GO:0099402 GO:1902494 GO:1990234 GO:2000026 GO:2000280 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

94

Amino Acids

10.94

Weight (kDa)

5.37

Isoelectric Point (pI)

54.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42560 AT5G36300 AT5G36300
fragaria_vesca	FvH4_7g33490 FvH4_7g33490 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530
malus_domestica	MD01G1232900.v1.1
prunus_persica	Prupe.2G323300_v2.0.a1
pyrus_communis	pycom01g24130 pycom07g27830
rosa_chinensis	RchiOBHm_Chr1g0383591 RchiOBHm_Chr1g0383651
rosa_laevigata	RLG00000026099
rosa_multiflora	Rmu_sc0012471.1_g000010 Rmu_sc0012471.1_g000013
rosa_roxburghii	Rroxscaffold_2G00116820 Rroxscaffold_2G00117690 Rroxscaffold_3G00229630 Rroxscaffold_4G00277240 Rroxscaffold_4G00302110 Rroxscaffold_5G00350700 Rroxscaffold_5G00350710 Rroxscaffold_7G00181950
rosa_rugosa	Rorug01G0442100 Rorug01G0442200
rosa_samantha	Rh1AG467600 Rh1AG467800 Rh1BG425300 Rh1CG437900 Rh1CG438100 Rh1DG458100
rosa_wichuraiana	Rw1G040460 Rw1G040480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	14
AccB1I	GGYRCC	1 cut(s)	14
AccB7I	CCANNNNNTGG	1 cut(s)	93
AfaI	GTAC	1 cut(s)	16
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	213
Asp718I	GGTACC	1 cut(s)	14
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	17
BaeGI	GKGCMC	1 cut(s)	222
BanI	GGYRCC	1 cut(s)	14
BccI	CCATC	1 cut(s)	74
BcnI	CCSGG	1 cut(s)	114
Bme1390I	CCNGG	1 cut(s)	114
BmiI	GGNNCC	2 cut(s)	16, 85
BmrFI	CCNGG	1 cut(s)	114
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpuMI	CCSGG	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
BseGI	GGATG	2 cut(s)	85, 128
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseSI	GKGCMC	1 cut(s)	222
BshNI	GGYRCC	1 cut(s)	14
BsiSI	CCGG	2 cut(s)	113, 122
BslI	CCNNNNNNNGG	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	222
BspLI	GGNNCC	2 cut(s)	16, 85
BspT107I	GGYRCC	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	153
Bst6I	CTCTTC	1 cut(s)	226
BstF5I	GGATG	2 cut(s)	85, 128
BstSCI	CCNGG	1 cut(s)	112
BstSLI	GKGCMC	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	85, 128
Csp6I	GTAC	1 cut(s)	15
CviAII	CATG	2 cut(s)	88, 282
CviJI	RGCY	3 cut(s)	68, 84, 148
CviKI_1	RGCY	3 cut(s)	68, 84, 148
CviQI	GTAC	1 cut(s)	15
DraI	TTTAAA	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
FaeI	CATG	2 cut(s)	91, 285
FaiI	YATR	5 cut(s)	39, 60, 89, 264, 283
FatI	CATG	2 cut(s)	87, 281
FokI	GGATG	2 cut(s)	92, 115
HapII	CCGG	2 cut(s)	113, 122
Hin1II	CATG	2 cut(s)	91, 285
HpaII	CCGG	2 cut(s)	113, 122
HphI	GGTGA	1 cut(s)	17
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	1 cut(s)	153
Hsp92II	CATG	2 cut(s)	91, 285
KpnI	GGTACC	1 cut(s)	18
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	3 cut(s)	54, 126, 135
MaeIII	GTNAC	3 cut(s)	71, 124, 238
MboII	GAAGA	1 cut(s)	243
MhlI	GDGCHC	1 cut(s)	222
MnlI	CCTC	2 cut(s)	70, 183
MseI	TTAA	1 cut(s)	189
MspI	CCGG	2 cut(s)	113, 122
MspR9I	CCNGG	1 cut(s)	114
NciI	CCSGG	1 cut(s)	114
NlaIII	CATG	2 cut(s)	91, 285
NlaIV	GGNNCC	2 cut(s)	16, 85
NmuCI	GTSAC	1 cut(s)	238
PflMI	CCANNNNNTGG	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	16, 85
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	189
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	2 cut(s)	175, 186
StyD4I	CCNGG	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	153
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	238
Van91I	CCANNNNNTGG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.