Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002642

Physical Location & Seq

Genomic Coordinates Forward (+)

48056870 .. 48059738

Gene Structure 2869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00117690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCCATGAGCACCGGTTGGGTATGTGAGTGGAGATCAATATTATGGAGCAAAAGCAAGTGTCAATGCTTTGGGAGGTTGGAGGATACTTGGTCTATGATTAATGAGATGAAGCGGAAGAGGTTCCGGCTGGAATCATTTGTGTATAGTAAGGTTATTGTTCTTTATTGGGACAATGGGATGTGGAAGAAAACAATGGACATTGTGGAAGAGATAAGAGAAATGGGGATGGTATTAGACAAACGAGTTACAAAAGCATTATTGATACATTTGGGAAATATGATGAGTCGATCAGCCACCACGGATGGAGCTTCCGATTTGGTTGTCTTCCACCAAGTCGATGAGAGCAGCTGCCTTCGATATGAAGAGCCGAAGGTGATGAGTGGTGGTGTTGGACTTGAGCTTCCATTGGAGCTTGGCTCGGTTCTACTTGGGAGGTCAACGGTGGAGATCACACTCCTCCGAGTTTTGAGTGTGTGTAGGGAGAGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

164

Amino Acids

18.94

Weight (kDa)

7.62

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42560 AT5G36300 AT5G36300
fragaria_vesca	FvH4_7g33490 FvH4_7g33490 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530
malus_domestica	MD01G1232900.v1.1
prunus_persica	Prupe.2G323300_v2.0.a1
pyrus_communis	pycom01g24130 pycom07g27830
rosa_chinensis	RchiOBHm_Chr1g0383591 RchiOBHm_Chr1g0383651
rosa_laevigata	RLG00000026099
rosa_multiflora	Rmu_sc0012471.1_g000010 Rmu_sc0012471.1_g000013
rosa_roxburghii	Rroxscaffold_2G00116820 Rroxscaffold_2G00117690 Rroxscaffold_3G00229630 Rroxscaffold_4G00277240 Rroxscaffold_4G00302110 Rroxscaffold_5G00350700 Rroxscaffold_5G00350710 Rroxscaffold_7G00181950
rosa_rugosa	Rorug01G0442100 Rorug01G0442200
rosa_samantha	Rh1AG467600 Rh1AG467800 Rh1BG425300 Rh1CG437900 Rh1CG438100 Rh1DG458100
rosa_wichuraiana	Rw1G040460 Rw1G040480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	115
AcoI	YGGCCR	1 cut(s)	3
AgeI	ACCGGT	1 cut(s)	14
AluBI	AGCT	4 cut(s)	311, 351, 403, 415
AluI	AGCT	4 cut(s)	311, 351, 403, 415
Alw21I	GWGCWC	1 cut(s)	14
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	348, 351
AseI	ATTAAT	1 cut(s)	102
AsiGI	ACCGGT	1 cut(s)	14
Asp700I	GAANNNNTTC	1 cut(s)	122
AsuHPI	GGTGA	1 cut(s)	388
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	319
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	338, 360
BccI	CCATC	2 cut(s)	223, 299
BciVI	GTATCC	1 cut(s)	79
BfuI	GTATCC	1 cut(s)	79
BisI	GCNGC	2 cut(s)	349, 352
BlsI	GCNGC	2 cut(s)	350, 353
BmiI	GGNNCC	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	319
BplI	GAGNNNNNCTC	2 cut(s)	404, 436
BpuEI	CTTGAG	1 cut(s)	419
BsaJI	CCNNGG	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	14
BsaXI	ACNNNNNCTCC	1 cut(s)	476
Bse118I	RCCGGY	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	3 cut(s)	186, 234, 310
BseRI	GAGGAG	1 cut(s)	449
BseXI	GCAGC	2 cut(s)	338, 360
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	2 cut(s)	15, 127
BslFI	GGGAC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	3 cut(s)	35, 290, 450
BspACI	CCGC	1 cut(s)	115
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	125
BspQI	GCTCTTC	1 cut(s)	360
BsrFI	RCCGGY	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	3 cut(s)	35, 290, 450
Bst4CI	ACNGT	1 cut(s)	445
Bst6I	CTCTTC	3 cut(s)	113, 204, 360
BstDSI	CCRYGG	1 cut(s)	300
BstF5I	GGATG	3 cut(s)	186, 234, 310
BstKTI	GATC	3 cut(s)	38, 293, 453
BstMBI	GATC	3 cut(s)	35, 290, 450
BstV1I	GCAGC	2 cut(s)	338, 360
BstV2I	GAAGAC	1 cut(s)	319
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	300
BtsCI	GGATG	3 cut(s)	186, 234, 310
Cfr10I	RCCGGY	1 cut(s)	14
CspAI	ACCGGT	1 cut(s)	14
CviAII	CATG	1 cut(s)	7
CviJI	RGCY	9 cut(s)	5, 130, 296, 311, 351, 370, 403, 415, 420
CviKI_1	RGCY	9 cut(s)	5, 130, 296, 311, 351, 370, 403, 415, 420
DpnI	GATC	3 cut(s)	37, 292, 452
DpnII	GATC	3 cut(s)	35, 290, 450
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	113, 204, 360
EarI	CTCTTC	3 cut(s)	113, 204, 360
FaeI	CATG	1 cut(s)	10
FaiI	YATR	7 cut(s)	8, 25, 46, 98, 147, 281, 363
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	1 cut(s)	6
Fnu4HI	GCNGC	2 cut(s)	349, 352
FokI	GGATG	3 cut(s)	193, 241, 317
Fsp4HI	GCNGC	2 cut(s)	349, 352
GluI	GCNGC	2 cut(s)	349, 352
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	15, 127
Hin1II	CATG	1 cut(s)	10
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HinfI	GANTC	2 cut(s)	134, 286
HpaII	CCGG	2 cut(s)	15, 127
HphI	GGTGA	1 cut(s)	388
Hpy166II	GTNNAC	1 cut(s)	441
Hpy188I	TCNGA	2 cut(s)	316, 464
Hpy8I	GTNNAC	1 cut(s)	441
HpyAV	CCTTC	2 cut(s)	365, 367
HpyCH4III	ACNGT	1 cut(s)	445
Hsp92II	CATG	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	35, 290, 450
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	3 cut(s)	48, 308, 412
LpnPI	CCDG	3 cut(s)	28, 116, 140
Lsp1109I	GCAGC	2 cut(s)	338, 360
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	3 cut(s)	37, 292, 452
MboI	GATC	3 cut(s)	35, 290, 450
MboII	GAAGA	5 cut(s)	130, 199, 221, 319, 377
MhlI	GDGCHC	1 cut(s)	14
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	295
MmeI	TCCRAC	2 cut(s)	60, 373
MnlI	CCTC	5 cut(s)	69, 76, 114, 429, 470
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	102
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	351
MspI	CCGG	2 cut(s)	15, 127
NdeII	GATC	3 cut(s)	35, 290, 450
NlaIII	CATG	1 cut(s)	10
NlaIV	GGNNCC	1 cut(s)	125
PciSI	GCTCTTC	1 cut(s)	360
PdmI	GAANNNNTTC	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	134
PinAI	ACCGGT	1 cut(s)	14
PkrI	GCNGC	2 cut(s)	350, 353
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
PshBI	ATTAAT	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	351
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	2 cut(s)	349, 352
Sau3AI	GATC	3 cut(s)	35, 290, 450
SchI	GAGTC	1 cut(s)	295
SduI	GDGCHC	1 cut(s)	14
SetI	ASST	9 cut(s)	80, 125, 156, 313, 353, 378, 405, 417, 440
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
SsiI	CCGC	1 cut(s)	115
SspI	AATATT	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	445
TaqI	TCGA	3 cut(s)	289, 339, 358
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseI	GCWGC	2 cut(s)	348, 351
TspDTI	ATGAA	2 cut(s)	125, 378
TspGWI	ACGGA	1 cut(s)	317
VspI	ATTAAT	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.