Rroxscaffold_7G00181950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002642
Physical Location & Seq
Forward (+)
20983966 .. 20984946
981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00181950.1

Sequence Viewer

Length: 300 bp
ATGCTCCGGTTCGAAACCATCCAAGCGAGAGAGCGTTTCAGCTGGCCGAAGAGCGAAAAGGAAGAGAAAGCTAATAGCGAGAGGAAGCAATGGCGCTCTCTCTCCGCCGGCGACTTGTTGTCCCTCTCCGCGATCTCCTGGGATGTGGAAGAAAACAATGGACATTGTGGAAGAGATAAGAGAAATGGGGATGGTATTAGACAAACGAGTTACAAAAGCATTATTGATACATTTGGGAAATATGATGAGTTGGATGAAACATTGGAAGCCTTGGAAACCTTTAATTCGTTGATACGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.53

Weight (kDa)

5.23

Isoelectric Point (pI)

33.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 131
AciI CCGC 2 cut(s) 105, 129
AcoI YGGCCR 1 cut(s) 44
AhdI GACNNNNNGTC 1 cut(s) 118
AjnI CCWGG 1 cut(s) 137
AluBI AGCT 2 cut(s) 42, 71
AluI AGCT 2 cut(s) 42, 71
AoxI GGCC 1 cut(s) 44
AspLEI GCGC 1 cut(s) 96
AsuII TTCGAA 1 cut(s) 12
BccI CCATC 2 cut(s) 26, 185
BciT130I CCWGG 1 cut(s) 139
BfoI RGCGCY 1 cut(s) 97
Bme1390I CCNGG 1 cut(s) 139
BmeRI GACNNNNNGTC 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 139
Bpu14I TTCGAA 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 138, 270
BsaWI WCCGGW 1 cut(s) 6
Bse118I RCCGGY 1 cut(s) 107
Bse3DI GCAATG 1 cut(s) 95
BseBI CCWGG 1 cut(s) 139
BseDI CCNNGG 2 cut(s) 138, 270
BseGI GGATG 4 cut(s) 18, 148, 196, 259
BseMI GCAATG 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 131
BshFI GGCC 1 cut(s) 46
BsiSI CCGG 2 cut(s) 7, 108
BslFI GGGAC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 106
BsnI GGCC 1 cut(s) 46
Bsp119I TTCGAA 1 cut(s) 12
Bsp143I GATC 1 cut(s) 132
BspACI CCGC 2 cut(s) 105, 129
BspANI GGCC 1 cut(s) 46
BspFNI CGCG 1 cut(s) 131
BspQI GCTCTTC 1 cut(s) 44
BspT104I TTCGAA 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 95
BsrFI RCCGGY 1 cut(s) 107
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 2 cut(s) 138, 270
BssMI GATC 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 297
Bst6I CTCTTC 3 cut(s) 44, 57, 166
BstBI TTCGAA 1 cut(s) 12
BstC8I GCNNGC 2 cut(s) 44, 109
BstF5I GGATG 4 cut(s) 18, 148, 196, 259
BstFNI CGCG 1 cut(s) 131
BstH2I RGCGCY 1 cut(s) 97
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 1 cut(s) 135
BstMBI GATC 1 cut(s) 132
BstNI CCWGG 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 137
BstUI CGCG 1 cut(s) 131
BsuRI GGCC 1 cut(s) 46
BtsCI GGATG 4 cut(s) 18, 148, 196, 259
Cac8I GCNNGC 2 cut(s) 44, 109
CfoI GCGC 1 cut(s) 96
Cfr10I RCCGGY 1 cut(s) 107
CviJI RGCY 4 cut(s) 42, 46, 71, 269
CviKI_1 RGCY 4 cut(s) 42, 46, 71, 269
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
DriI GACNNNNNGTC 1 cut(s) 118
EaeI YGGCCR 1 cut(s) 44
Eam1104I CTCTTC 3 cut(s) 44, 57, 166
Eam1105I GACNNNNNGTC 1 cut(s) 118
EarI CTCTTC 3 cut(s) 44, 57, 166
EciI GGCGGA 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 270
EcoRII CCWGG 1 cut(s) 137
EcoT14I CCWWGG 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 270
FaiI YATR 1 cut(s) 243
FaqI GGGAC 1 cut(s) 106
FokI GGATG 4 cut(s) 5, 155, 203, 266
GlaI GCGC 1 cut(s) 95
HaeII RGCGCY 1 cut(s) 97
HaeIII GGCC 1 cut(s) 46
HapII CCGG 2 cut(s) 7, 108
HhaI GCGC 1 cut(s) 96
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HpaII CCGG 2 cut(s) 7, 108
HpyCH4III ACNGT 1 cut(s) 297
HspAI GCGC 1 cut(s) 94
KroI GCCGGC 1 cut(s) 107
KroNI GCCGGC 1 cut(s) 109
Kzo9I GATC 1 cut(s) 132
LguI GCTCTTC 1 cut(s) 44
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 5 cut(s) 20, 28, 121, 124, 151
MaeIII GTNAC 1 cut(s) 209
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MboII GAAGA 4 cut(s) 61, 74, 161, 183
MluCI AATT 1 cut(s) 283
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 2 cut(s) 75, 134
MreI CGCCGGCG 1 cut(s) 107
MroNI GCCGGC 1 cut(s) 107
MseI TTAA 1 cut(s) 282
MspA1I CMGCKG 1 cut(s) 42
MspI CCGG 2 cut(s) 7, 108
MspR9I CCNGG 1 cut(s) 139
MvaI CCWGG 1 cut(s) 139
MvnI CGCG 1 cut(s) 131
NaeI GCCGGC 1 cut(s) 109
NdeII GATC 1 cut(s) 132
NgoMIV GCCGGC 1 cut(s) 107
NspV TTCGAA 1 cut(s) 12
PciSI GCTCTTC 1 cut(s) 44
PdiI GCCGGC 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 137
PspGI CCWGG 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 42
SapI GCTCTTC 1 cut(s) 44
SaqAI TTAA 1 cut(s) 282
Sau3AI GATC 1 cut(s) 132
ScrFI CCNGG 1 cut(s) 139
SetI ASST 3 cut(s) 44, 73, 281
SfuI TTCGAA 1 cut(s) 12
SgrAI CRCCGGYG 1 cut(s) 107
Sse9I AATT 1 cut(s) 283
SsiI CCGC 2 cut(s) 105, 129
StyD4I CCNGG 1 cut(s) 137
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 1 cut(s) 297
TaqI TCGA 1 cut(s) 12
TasI AATT 1 cut(s) 283
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TspDTI ATGAA 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.