Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002642

Physical Location & Seq

Genomic Coordinates Forward (+)

27387071 .. 27388525

Gene Structure 1455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g27830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGCTGGTGCAGTCCATTTGGTGTCGCACTTCACCTTCACTTTCATCCACAGCCAGCTTCTTCACAATCACTCCACTCGCTCTCTTCTTTCCGAGCTGCCTCAAACACCCCGGGACATTCAAGTTCTACGCTTCTTTCACCCACTCGAATCGCATCAAGACCGGGAAAGAAGTCAAATTTACGTCCCCCAATGACGAAAACACTTCAGTTCCCAGCTATCCAATTGCTCAAACCACTGGAGAGGAACTTTCGGGCGAATCATACAACAATTTGATAAGTGGGTTCTGCAGGGCAGGGCATATCGACAAGGCCATGGCTGTTCTTGCAGAAATGGAAGCTCTCGGCGTTCGACCCAATTCGGTGTCTTACGCTTATTTGATTGACGGTCTTGGAAGCAATGGCAGGACTTTGGAGGCCGATGTGTTGTTTCAGGAAATGATATGTTCTGGGTTGAGGCCACGACTCAGGGTTTACAATGTTATGCTCAGAGGGTGTTTGAAGAAAGGCCTCTTAGAACTTGCTACTAGAGTTTTGGCAGTAATGGGCTATTTGGGTGTGGAGAAAAATGAAGAGACGTATGAGATTCTTCTTGATTACTATGTCAGTGCCGGGAGGTTGGAAGATACTTGGTCAATGATTAATGAGATGAAGCGGAAGCGGTTTCGGTTGAGCTCGTTTGTGTATAGCAAGGTTATTGGTCTTTACAGGGACAATGGGATGTGGAAGAAGGCAATGGACATTGTGGGAGAGATAAGGGAAATGGGGATGGCATTGGATAAACAGATTTTCAACAGCATTATTGATACGTTTGGGAAATATGGCGAATTGGACGAAGCTTTGGAAGTGTTTGATAAAATGAAACAAGAAGGTCTGAAGCCTGATATAACGACGTTTAATTCGTTGATAAGGTGGTATTGTAAAGCAGGGAATATAAGCAAGGCTCTTGAGTTGTTTACCGAGATGCAGGAACAGGGGTTGTATCCTGATCCAAAGATCTTTGTCACTGTTATTAGCCGATTAGGGGAGCAGGGGAAGTGGGATATGATCCAGAAGACTTTTGAGAATATGAAGCGCCGAGGGCATAAGAAAAGTGGGATAATTTATGCTGTTTTGGTTGATATTTATGGGCAGTATGGAAAATTTCAGGATGCTCAAGAGTGCATATCTGCCCTAAAGGTGGAAGGTCTTATTCCTTCAGCCAGTATGTTTTGTGTCTTAGCAAATGCCTACGCTCAACAGGGATTATGTCATCAGACGGTTAAGGTGCTTCAGCTCATGGAAGCTGAGGGAATCGAACCAAACGTCATAATGCTGAATGTGCTGATCGATGCGGTTATTCGGTGTTGCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

451

Amino Acids

50.75

Weight (kDa)

7.46

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42560 AT5G36300 AT5G36300
fragaria_vesca	FvH4_7g33490 FvH4_7g33490 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530
malus_domestica	MD01G1232900.v1.1
prunus_persica	Prupe.2G323300_v2.0.a1
pyrus_communis	pycom01g24130 pycom07g27830
rosa_chinensis	RchiOBHm_Chr1g0383591 RchiOBHm_Chr1g0383651
rosa_laevigata	RLG00000026099
rosa_multiflora	Rmu_sc0012471.1_g000010 Rmu_sc0012471.1_g000013
rosa_roxburghii	Rroxscaffold_2G00116820 Rroxscaffold_2G00117690 Rroxscaffold_3G00229630 Rroxscaffold_4G00277240 Rroxscaffold_4G00302110 Rroxscaffold_5G00350700 Rroxscaffold_5G00350710 Rroxscaffold_7G00181950
rosa_rugosa	Rorug01G0442100 Rorug01G0442200
rosa_samantha	Rh1AG467600 Rh1AG467800 Rh1BG425300 Rh1CG437900 Rh1CG438100 Rh1DG458100
rosa_wichuraiana	Rw1G040460 Rw1G040480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	652, 658, 1331
AclWI	GGATC	2 cut(s)	980, 1039
AcsI	RAATTY	2 cut(s)	176, 1139
AcuI	CTGAAG	4 cut(s)	189, 893, 1179, 1253
AfiI	CCNNNNNNNGG	2 cut(s)	1021, 1177
AgsI	TTSAA	3 cut(s)	121, 499, 790
AluBI	AGCT	8 cut(s)	57, 96, 216, 338, 672, 836, 1273, 1283
AluI	AGCT	8 cut(s)	57, 96, 216, 338, 672, 836, 1273, 1283
Alw21I	GWGCWC	1 cut(s)	674
Alw26I	GTCTC	1 cut(s)	566
AlwI	GGATC	2 cut(s)	980, 1039
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	4 cut(s)	309, 414, 455, 505
ApeKI	GCWGC	1 cut(s)	96
ApoI	RAATTY	2 cut(s)	176, 1139
ArsI	GACNNNNNNTTYG	4 cut(s)	880, 912, 1287, 1319
AseI	ATTAAT	1 cut(s)	639
AspLEI	GCGC	1 cut(s)	1074
AsuC2I	CCSGG	4 cut(s)	111, 112, 163, 610
AsuHPI	GGTGA	2 cut(s)	24, 130
AvaI	CYCGRG	1 cut(s)	110
BanII	GRGCYC	1 cut(s)	674
BbsI	GAAGAC	1 cut(s)	1058
Bbv12I	GWGCWC	1 cut(s)	674
BbvCI	CCTCAGC	1 cut(s)	1284
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	1 cut(s)	760
BciVI	GTATCC	1 cut(s)	990
BcnI	CCSGG	4 cut(s)	111, 112, 163, 610
BcoDI	GTCTC	1 cut(s)	566
BfaI	CTAG	1 cut(s)	525
BfmI	CTRYAG	1 cut(s)	286
BfoI	RGCGCY	1 cut(s)	1075
BfuI	GTATCC	1 cut(s)	990
BglII	AGATCT	1 cut(s)	993
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
Bme1390I	CCNGG	4 cut(s)	111, 112, 163, 610
BmeT110I	CYCGRG	1 cut(s)	110
BmrFI	CCNGG	4 cut(s)	111, 112, 163, 610
BmsI	GCATC	4 cut(s)	162, 951, 1138, 1318
BpiI	GAAGAC	1 cut(s)	1058
BpmI	CTGGAG	1 cut(s)	258
Bpu10I	CCTNAGC	1 cut(s)	1284
BpuEI	CTTGAG	2 cut(s)	965, 1137
BpuMI	CCSGG	4 cut(s)	111, 112, 163, 610
Bsa29I	ATCGAT	1 cut(s)	1326
BsaJI	CCNNGG	4 cut(s)	109, 110, 312, 1075
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bsc4I	CCNNNNNNNGG	2 cut(s)	1021, 1177
Bse1I	ACTGG	2 cut(s)	241, 1200
Bse3DI	GCAATG	2 cut(s)	403, 738
BseCI	ATCGAT	1 cut(s)	1326
BseDI	CCNNGG	4 cut(s)	109, 110, 312, 1075
BseGI	GGATG	4 cut(s)	44, 723, 771, 1153
BseLI	CCNNNNNNNGG	2 cut(s)	1021, 1177
BseMI	GCAATG	2 cut(s)	403, 738
BseMII	CTCAG	3 cut(s)	478, 499, 1275
BseNI	ACTGG	2 cut(s)	241, 1200
BseXI	GCAGC	1 cut(s)	83
BseYI	CCCAGC	1 cut(s)	212
BsgI	GTGCAG	1 cut(s)	29
BshFI	GGCC	4 cut(s)	311, 416, 457, 507
BshVI	ATCGAT	1 cut(s)	1326
BsiHKAI	GWGCWC	1 cut(s)	674
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	3 cut(s)	111, 162, 609
BslFI	GGGAC	3 cut(s)	127, 169, 722
BslI	CCNNNNNNNGG	2 cut(s)	1021, 1177
BsmAI	GTCTC	1 cut(s)	566
BsmBI	CGTCTC	1 cut(s)	566
BsmFI	GGGAC	3 cut(s)	127, 169, 722
BsnI	GGCC	4 cut(s)	311, 416, 457, 507
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	674
Bsp143I	GATC	4 cut(s)	985, 993, 1044, 1323
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	3 cut(s)	652, 658, 1331
BspANI	GGCC	4 cut(s)	311, 416, 457, 507
BspCNI	CTCAG	3 cut(s)	477, 498, 1276
BspDI	ATCGAT	1 cut(s)	1326
BspMAI	CTGCAG	1 cut(s)	290
BspPI	GGATC	2 cut(s)	980, 1039
BsrDI	GCAATG	2 cut(s)	403, 738
BsrI	ACTGG	2 cut(s)	241, 1200
BssECI	CCNNGG	4 cut(s)	109, 110, 312, 1075
BssMI	GATC	4 cut(s)	985, 993, 1044, 1323
BssT1I	CCWWGG	1 cut(s)	312
Bst4CI	ACNGT	3 cut(s)	386, 1006, 1258
Bst6I	CTCTTC	2 cut(s)	89, 564
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	5 cut(s)	464, 485, 511, 1216, 1284
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	4 cut(s)	44, 723, 771, 1153
BstH2I	RGCGCY	1 cut(s)	1075
BstHHI	GCGC	1 cut(s)	1074
BstKTI	GATC	4 cut(s)	988, 996, 1047, 1326
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	4 cut(s)	985, 993, 1044, 1323
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 1078, 1318
BstSCI	CCNGG	4 cut(s)	109, 110, 161, 608
BstSFI	CTRYAG	1 cut(s)	286
BstV1I	GCAGC	1 cut(s)	83
BstV2I	GAAGAC	1 cut(s)	1058
BstX2I	RGATCY	1 cut(s)	993
BstYI	RGATCY	1 cut(s)	993
Bsu15I	ATCGAT	1 cut(s)	1326
BsuI	GTATCC	1 cut(s)	990
BsuRI	GGCC	4 cut(s)	311, 416, 457, 507
BsuTUI	ATCGAT	1 cut(s)	1326
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	4 cut(s)	44, 723, 771, 1153
BtsIMutI	CAGTG	3 cut(s)	234, 610, 1002
Cac8I	GCNNGC	1 cut(s)	55
CfoI	GCGC	1 cut(s)	1074
Cfr9I	CCCGGG	1 cut(s)	110
ClaI	ATCGAT	1 cut(s)	1326
CviAII	CATG	2 cut(s)	313, 1276
DdeI	CTNAG	5 cut(s)	464, 485, 511, 1216, 1284
DpnI	GATC	4 cut(s)	987, 995, 1046, 1325
DpnII	GATC	4 cut(s)	985, 993, 1044, 1323
Eam1104I	CTCTTC	2 cut(s)	89, 564
EarI	CTCTTC	2 cut(s)	89, 564
Ecl136II	GAGCTC	1 cut(s)	672
Eco130I	CCWWGG	1 cut(s)	312
Eco147I	AGGCCT	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	674
Eco53kI	GAGCTC	1 cut(s)	672
Eco57I	CTGAAG	4 cut(s)	189, 893, 1179, 1253
Eco88I	CYCGRG	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	672
EcoT14I	CCWWGG	1 cut(s)	312
EcoT38I	GRGCYC	1 cut(s)	674
ErhI	CCWWGG	1 cut(s)	312
Esp3I	CGTCTC	1 cut(s)	566
FaeI	CATG	2 cut(s)	316, 1279
FaqI	GGGAC	3 cut(s)	127, 169, 722
FatI	CATG	2 cut(s)	312, 1275
Fnu4HI	GCNGC	1 cut(s)	97
FokI	GGATG	4 cut(s)	31, 730, 778, 1160
FriOI	GRGCYC	1 cut(s)	674
Fsp4HI	GCNGC	1 cut(s)	97
FspBI	CTAG	1 cut(s)	525
GlaI	GCGC	1 cut(s)	1073
GluI	GCNGC	1 cut(s)	97
GsaI	CCCAGC	1 cut(s)	216
GsuI	CTGGAG	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	1075
HaeIII	GGCC	4 cut(s)	311, 416, 457, 507
HapII	CCGG	3 cut(s)	111, 162, 609
HhaI	GCGC	1 cut(s)	1074
Hin1II	CATG	2 cut(s)	316, 1279
Hin6I	GCGC	1 cut(s)	1072
HinP1I	GCGC	1 cut(s)	1072
HindIII	AAGCTT	1 cut(s)	834
HinfI	GANTC	5 cut(s)	148, 257, 462, 583, 1290
HpaII	CCGG	3 cut(s)	111, 162, 609
HphI	GGTGA	2 cut(s)	24, 130
Hpy166II	GTNNAC	2 cut(s)	472, 954
Hpy188I	TCNGA	4 cut(s)	93, 488, 873, 1254
Hpy188III	TCNNGA	8 cut(s)	157, 431, 590, 944, 983, 1048, 1145, 1154
Hpy8I	GTNNAC	2 cut(s)	472, 954
Hpy99I	CGWCG	1 cut(s)	892
HpyAV	CCTTC	5 cut(s)	45, 721, 860, 1175, 1203
HpyCH4III	ACNGT	3 cut(s)	386, 1006, 1258
HpyCH4IV	ACGT	5 cut(s)	182, 575, 806, 890, 1302
HpyCH4V	TGCA	5 cut(s)	10, 288, 326, 964, 1161
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 1078, 1318
HpyF3I	CTNAG	5 cut(s)	464, 485, 511, 1216, 1284
HpySE526I	ACGT	5 cut(s)	182, 575, 806, 890, 1302
Hsp92II	CATG	2 cut(s)	316, 1279
HspAI	GCGC	1 cut(s)	1072
Kzo9I	GATC	4 cut(s)	985, 993, 1044, 1323
LmnI	GCTCC	1 cut(s)	1024
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	4 cut(s)	162, 951, 1138, 1318
MaeI	CTAG	1 cut(s)	525
MaeII	ACGT	5 cut(s)	182, 575, 806, 890, 1302
MaeIII	GTNAC	1 cut(s)	1000
MalI	GATC	4 cut(s)	987, 995, 1046, 1325
MboI	GATC	4 cut(s)	985, 993, 1044, 1323
MboII	GAAGA	8 cut(s)	52, 76, 511, 578, 581, 632, 736, 1063
MfeI	CAATTG	1 cut(s)	222
MflI	RGATCY	1 cut(s)	993
MhlI	GDGCHC	1 cut(s)	674
MluCI	AATT	8 cut(s)	176, 222, 268, 355, 824, 895, 1098, 1139
MlyI	GAGTC	1 cut(s)	456
MmeI	TCCRAC	1 cut(s)	597
MnlI	CCTC	9 cut(s)	110, 235, 406, 447, 482, 518, 606, 1070, 1279
MseI	TTAA	3 cut(s)	639, 894, 1260
MspI	CCGG	3 cut(s)	111, 162, 609
MspR9I	CCNGG	4 cut(s)	111, 112, 163, 610
MunI	CAATTG	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	323, 1078, 1318
NciI	CCSGG	4 cut(s)	111, 112, 163, 610
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	4 cut(s)	985, 993, 1044, 1323
NlaIII	CATG	2 cut(s)	316, 1279
NmeAIII	GCCGAG	2 cut(s)	321, 1100
NmuCI	GTSAC	1 cut(s)	1000
PceI	AGGCCT	1 cut(s)	507
PcsI	WCGNNNNNNNCGW	2 cut(s)	896, 1299
PfeI	GAWTC	4 cut(s)	148, 257, 583, 1290
PkrI	GCNGC	1 cut(s)	98
PleI	GAGTC	1 cut(s)	456
PpsI	GAGTC	1 cut(s)	456
PshBI	ATTAAT	1 cut(s)	639
Psp124BI	GAGCTC	1 cut(s)	674
PspFI	CCCAGC	1 cut(s)	212
PstI	CTGCAG	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	993
SacI	GAGCTC	1 cut(s)	674
SaqAI	TTAA	3 cut(s)	639, 894, 1260
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	4 cut(s)	985, 993, 1044, 1323
SchI	GAGTC	1 cut(s)	456
ScrFI	CCNGG	4 cut(s)	111, 112, 163, 610
SduI	GDGCHC	1 cut(s)	674
SfaNI	GCATC	4 cut(s)	162, 951, 1138, 1318
SfcI	CTRYAG	1 cut(s)	286
SmaI	CCCGGG	1 cut(s)	112
SmlI	CTYRAG	2 cut(s)	944, 1152
SmoI	CTYRAG	2 cut(s)	944, 1152
Sse9I	AATT	8 cut(s)	176, 222, 268, 355, 824, 895, 1098, 1139
SseBI	AGGCCT	1 cut(s)	507
SsiI	CCGC	3 cut(s)	652, 658, 1331
SspMI	CTAG	1 cut(s)	525
SstI	GAGCTC	1 cut(s)	674
StuI	AGGCCT	1 cut(s)	507
StyD4I	CCNGG	4 cut(s)	109, 110, 161, 608
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	3 cut(s)	386, 1006, 1258
TaiI	ACGT	5 cut(s)	185, 578, 809, 893, 1305
TaqI	TCGA	5 cut(s)	146, 303, 349, 1293, 1326
TasI	AATT	8 cut(s)	176, 222, 268, 355, 824, 895, 1098, 1139
TfiI	GAWTC	4 cut(s)	148, 257, 583, 1290
Tru1I	TTAA	3 cut(s)	639, 894, 1260
Tru9I	TTAA	3 cut(s)	639, 894, 1260
TscAI	CASTG	3 cut(s)	241, 610, 1009
TseFI	GTSAC	1 cut(s)	1000
TseI	GCWGC	1 cut(s)	96
Tsp45I	GTSAC	1 cut(s)	1000
TspDTI	ATGAA	5 cut(s)	33, 582, 662, 872, 1082
TspMI	CCCGGG	1 cut(s)	110
TspRI	CASTG	3 cut(s)	241, 610, 1009
VspI	ATTAAT	1 cut(s)	639
XapI	RAATTY	2 cut(s)	176, 1139
XmaI	CCCGGG	1 cut(s)	110
XspI	CTAG	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.