Rroxscaffold_5G00350710

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002642
Physical Location & Seq
Reverse (-)
25113191 .. 25113757
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00350710.1

Sequence Viewer

Length: 258 bp
ATGTCCCAACTCTCGGAGAGGAAATTTCCTTTGAGTTATACAACCATTTGTTACAAGATTTTTTGTAGAGTTGGGCATGTTGATAAGGCCATGGCTCTTCTTGCTCGAATGGAAGCTCTTGGCTTTCGACCCAATTCGATATCCTACACTCGTTTAATTGATGCTCTAGGAAGTATTGGCAGGACTTTGGAAGCTGATGTGTTGTGGGGTTTAGGCCAAGAATTAAGCTTTACAATGTGTTGCTTAGAGGGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

85

Amino Acids

9.54

Weight (kDa)

7.66

Isoelectric Point (pI)

23.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 20 - 56 2.9e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 13
AluBI AGCT 3 cut(s) 116, 194, 228
AluI AGCT 3 cut(s) 116, 194, 228
AoxI GGCC 2 cut(s) 87, 214
ApoI RAATTY 1 cut(s) 23
BfaI CTAG 1 cut(s) 167
BmsI GCATC 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 90
Bsc4I CCNNNNNNNGG 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 13
BshFI GGCC 2 cut(s) 89, 216
BslI CCNNNNNNNGG 1 cut(s) 13
BsnI GGCC 2 cut(s) 89, 216
Bsp19I CCATGG 1 cut(s) 90
BspANI GGCC 2 cut(s) 89, 216
BspQI GCTCTTC 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 244
BstDSI CCRYGG 1 cut(s) 90
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNSI RCATGY 1 cut(s) 80
BsuRI GGCC 2 cut(s) 89, 216
BtgI CCRYGG 1 cut(s) 90
CviAII CATG 2 cut(s) 77, 91
CviJI RGCY 7 cut(s) 89, 95, 116, 123, 194, 216, 228
CviKI_1 RGCY 7 cut(s) 89, 95, 116, 123, 194, 216, 228
DdeI CTNAG 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco130I CCWWGG 1 cut(s) 90
Eco32I GATATC 1 cut(s) 141
EcoRV GATATC 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 2 cut(s) 80, 94
FaiI YATR 3 cut(s) 39, 78, 92
FatI CATG 2 cut(s) 76, 90
FspBI CTAG 1 cut(s) 167
HaeIII GGCC 2 cut(s) 89, 216
Hin1II CATG 2 cut(s) 80, 94
HindIII AAGCTT 1 cut(s) 226
Hpy188I TCNGA 1 cut(s) 16
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 244
Hsp92II CATG 2 cut(s) 80, 94
LguI GCTCTTC 1 cut(s) 102
LpnPI CCDG 1 cut(s) 166
LweI GCATC 1 cut(s) 151
MaeI CTAG 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 50
MboII GAAGA 1 cut(s) 89
MluCI AATT 4 cut(s) 23, 133, 156, 221
MnlI CCTC 2 cut(s) 12, 241
MseI TTAA 2 cut(s) 155, 224
MwoI GCNNNNNNNGC 1 cut(s) 101
NcoI CCATGG 1 cut(s) 90
NlaIII CATG 2 cut(s) 80, 94
NspI RCATGY 1 cut(s) 80
PciSI GCTCTTC 1 cut(s) 102
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 2 cut(s) 155, 224
SetI ASST 3 cut(s) 118, 196, 230
SfaNI GCATC 1 cut(s) 151
Sse9I AATT 4 cut(s) 23, 133, 156, 221
SspMI CTAG 1 cut(s) 167
StyI CCWWGG 1 cut(s) 90
TaqI TCGA 3 cut(s) 106, 127, 137
TasI AATT 4 cut(s) 23, 133, 156, 221
Tru1I TTAA 2 cut(s) 155, 224
Tru9I TTAA 2 cut(s) 155, 224
XapI RAATTY 1 cut(s) 23
XceI RCATGY 1 cut(s) 80
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.