RLG00000026099

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002642
Physical Location & Seq
Reverse (-)
519659 .. 521457
1799 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026099

Sequence Viewer

Length: 1566 bp
ATGCTGACGCAGTCGCTTTTGTGTCCCAAGTCACCTTCAGTGTCATCGTCCTCAGGTAGCTTCTTCACTTCTCTCTCTCTGTTCTGTCCAACTAGTCTCAAATACTCTGAGAAACACAAGCTGCATGCTTCTCTAAGTCGCTCAAATCCCAGCGAGGGTGTCAAAGAATTCAACTTTCTAGCTTCAAACGACGAAACTCATTCAGTTACTGAATACCCAAGTGTCCCAACTCTAGGAGAGGAAATTTCTTTTGAGTTATACAACCTTTTGTTACAAGATTTGTGTAGAGTTGGGCATGTTGATAAGGCCATGGCTCTTCTTGCTCGAATGGAAGCTCTTGGCTTTCGACCCAATTTGATATCCTACACTCGTTTAATTGATGCTCTGGGAAGTATTGGGAGGACTTTGGAGGCTGATGTGTTGTTTCAGGAAATGATATTTCTGGGGTTTAGGCCAAGAATTAAGCTTTACAATGTGTTGCTTAGAGGGTTTTTGAAGAAAGGTTTGTTAGGACTCGCAATTAGAGTTTTGGGGGTAATGGGTGATTTGTGTACTGAGAGAAATCAAGAAACTTATGAGATTTTACTTGATTACTATGTCAACGCTGGGAGGTTGGAGGATACTTGGTCAATGATTAATGAGATGAAGCGGAAGAGGTTTCGGCTGGGATCATTTGTGTATAGTAAGGTTATTGGTCTTTATAGGGACAATGGGATGTGGAAGAAAGCAATGGACATTGTAGAAGAGATAAGAGAAATGGGGATGGTATTAGACAAACAGATTTACAACAGCATTATTGATACATTTGGCAAATATGGTGAGTTGGATGAAGCATTGGAAGTGTTTGGGAAAATGAAACAAGAAGGTGTAAGGCCTGATATTTCGACCTTTAATTCGTTGATAAGGTGGCACTGTAAGTCTGGGTTGTTAAAGAAGGCCCTTGAGTTGTTTACCGAGATGCAAGAACAAGGATTATATCCTGATCCGAAAATGTTTGTTACTATTATCAGTAGATTGGGGGAGCAAGGGAAGTGGGATATGATACAGAAGACCTTTGAGAATATGAGAAGCCGAGGGCATAAAAAAAGTGGGACTATTTATGCTGCTCTGGTTGACATTTATGGGCAATATGGAAAATTTCAGGACGCAGAAGAGTGTGTATCTGCACTAAAGGCAGAAGGTCTTGTTCCCTCTGCCAGTATGTTTTGTGTCTTAGCAAATGCCTATGCCCAGCAGGGATTATGTGATCAGACAGTCAAAGTACTTCAGCTCATGGAAGCCGAGGGAATCGAACCAAATGTGATAATGCTGAATGTTTTGATTAATGCATTTGGTATTGCTGGTAGACATTTGGAGGCTTTGTCTATTTATCACCATATAAAAGAAAGTGGTTTAAGCCCCGATGTAGTTACTTATACTACCCTTATGAAGGCGTTTATTCGAGCAAGGAAGTATGATAAGGTCCCTGAGATATACACGGATATGGAACGTGCTGGATGCACCCCAGATAGAAAGGCTAGACAGATGTTAGAAGTCGCTTCATTGGTCCTTCAACAGAGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

522

Amino Acids

58.98

Weight (kDa)

7.55

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 87 - 129 8.6e-09 PPR repeat family
PPR_2 PF13041 188 - 229 2.3e-06 PPR repeat family
TPR_24 PF23276 236 - 336 2.8e-08 Fungal tetratrico peptide repeats
PPR_3 PF13812 246 - 302 4.2e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 253 - 286 2.8e-06 PPR repeat
PPR_2 PF13041 261 - 306 6.3e-13 PPR repeat family
PPR PF01535 261 - 290 5.4e-07 PPR repeat
PPR_1 PF12854 289 - 321 8.6e-10 PPR repeat
PPR_2 PF13041 292 - 328 2e-10 PPR repeat family
PPR PF01535 295 - 325 1.6e-08 PPR repeat
TPR_24 PF23276 336 - 459 1.7e-08 Fungal tetratrico peptide repeats
PPR_3 PF13812 390 - 445 6.7e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 432 - 480 1.3e-11 PPR repeat family
PPR_3 PF13812 455 - 503 1.5e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 467 - 504 6.3e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1345
AciI CCGC 1 cut(s) 649
AclWI GGATC 2 cut(s) 676, 977
AcsI RAATTY 3 cut(s) 167, 243, 1136
AcuI CTGAAG 2 cut(s) 21, 1250
AfaI GTAC 2 cut(s) 553, 1263
AfiI CCNNNNNNNGG 3 cut(s) 155, 233, 1429
AgsI TTSAA 4 cut(s) 172, 186, 496, 1553
AhlI ACTAGT 1 cut(s) 92
AluBI AGCT 6 cut(s) 60, 121, 182, 335, 466, 1270
AluI AGCT 6 cut(s) 60, 121, 182, 335, 466, 1270
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 2 cut(s) 676, 977
AlwNI CAGNNNCTG 1 cut(s) 209
AoxI GGCC 4 cut(s) 306, 452, 872, 936
ApeKI GCWGC 2 cut(s) 121, 1103
ApoI RAATTY 3 cut(s) 167, 243, 1136
ArsI GACNNNNNNTTYG 2 cut(s) 877, 909
AseI ATTAAT 2 cut(s) 636, 1323
AspS9I GGNCC 3 cut(s) 937, 1462, 1546
AsuHPI GGTGA 4 cut(s) 24, 554, 830, 1364
AvaII GGWCC 2 cut(s) 1462, 1546
AxyI CCTNAGG 1 cut(s) 52
BbsI GAAGAC 1 cut(s) 1055
BbvI GCAGC 2 cut(s) 108, 1090
BccI CCATC 1 cut(s) 757
BciVI GTATCC 1 cut(s) 613
BclI TGATCA 1 cut(s) 1246
BcoDI GTCTC 1 cut(s) 101
BcuI ACTAGT 1 cut(s) 92
BfaI CTAG 4 cut(s) 93, 179, 233, 1518
BfuI GTATCC 1 cut(s) 613
BisI GCNGC 2 cut(s) 122, 1104
BlsI GCNGC 2 cut(s) 123, 1105
BmcAI AGTACT 1 cut(s) 1263
Bme18I GGWCC 2 cut(s) 1462, 1546
BmgT120I GGNCC 3 cut(s) 937, 1462, 1546
BmiI GGNNCC 1 cut(s) 1464
BmsI GCATC 3 cut(s) 370, 948, 1487
BpiI GAAGAC 1 cut(s) 1055
BpuEI CTTGAG 1 cut(s) 962
BsaJI CCNNGG 3 cut(s) 309, 1072, 1281
BsaXI ACNNNNNCTCC 2 cut(s) 1346, 1376
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 233, 1429
Bse1I ACTGG 1 cut(s) 1197
Bse21I CCTNAGG 1 cut(s) 52
Bse3DI GCAATG 1 cut(s) 735
BseDI CCNNGG 3 cut(s) 309, 1072, 1281
BseGI GGATG 4 cut(s) 720, 768, 832, 1502
BseLI CCNNNNNNNGG 3 cut(s) 155, 233, 1429
BseMI GCAATG 1 cut(s) 735
BseMII CTCAG 4 cut(s) 66, 99, 546, 1458
BseNI ACTGG 1 cut(s) 1197
BseXI GCAGC 2 cut(s) 108, 1090
BseYI CCCAGC 4 cut(s) 149, 605, 664, 1230
BsgI GTGCAG 1 cut(s) 1149
BshFI GGCC 4 cut(s) 308, 454, 874, 938
BslFI GGGAC 5 cut(s) 9, 209, 719, 1105, 1448
BslI CCNNNNNNNGG 3 cut(s) 155, 233, 1429
BsmAI GTCTC 1 cut(s) 101
BsmFI GGGAC 5 cut(s) 9, 209, 719, 1105, 1448
BsnI GGCC 4 cut(s) 308, 454, 874, 938
Bsp143I GATC 3 cut(s) 668, 982, 1246
Bsp19I CCATGG 1 cut(s) 309
BspACI CCGC 1 cut(s) 649
BspANI GGCC 4 cut(s) 308, 454, 874, 938
BspCNI CTCAG 4 cut(s) 65, 100, 547, 1459
BspLI GGNNCC 1 cut(s) 1464
BspPI GGATC 2 cut(s) 676, 977
BspQI GCTCTTC 1 cut(s) 321
BsrDI GCAATG 1 cut(s) 735
BsrI ACTGG 1 cut(s) 1197
BssECI CCNNGG 3 cut(s) 309, 1072, 1281
BssMI GATC 3 cut(s) 668, 982, 1246
BssT1I CCWWGG 1 cut(s) 309
Bst4CI ACNGT 2 cut(s) 914, 1255
Bst6I CTCTTC 4 cut(s) 321, 647, 738, 1146
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 7 cut(s) 52, 108, 134, 482, 555, 1213, 1467
BstDSI CCRYGG 1 cut(s) 309
BstENI CCTNNNNNAGG 1 cut(s) 1427
BstF5I GGATG 4 cut(s) 720, 768, 832, 1502
BstKTI GATC 3 cut(s) 671, 985, 1249
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 3 cut(s) 668, 982, 1246
BstMWI GCNNNNNNNGC 2 cut(s) 320, 1172
BstNSI RCATGY 2 cut(s) 128, 299
BstV1I GCAGC 2 cut(s) 108, 1090
BstV2I GAAGAC 1 cut(s) 1055
Bsu36I CCTNAGG 1 cut(s) 52
BsuI GTATCC 1 cut(s) 613
BsuRI GGCC 4 cut(s) 308, 454, 874, 938
BtgI CCRYGG 1 cut(s) 309
BtsCI GGATG 4 cut(s) 720, 768, 832, 1502
BtsIMutI CAGTG 2 cut(s) 45, 910
Cac8I GCNNGC 1 cut(s) 126
CaiI CAGNNNCTG 1 cut(s) 209
Cfr13I GGNCC 3 cut(s) 937, 1462, 1546
CseI GACGC 2 cut(s) 16, 1154
Csp6I GTAC 2 cut(s) 552, 1262
CspCI CAANNNNNGTGG 2 cut(s) 1013, 1048
CviAII CATG 4 cut(s) 125, 296, 310, 1273
CviQI GTAC 2 cut(s) 552, 1262
DdeI CTNAG 7 cut(s) 52, 108, 134, 482, 555, 1213, 1467
DpnI GATC 3 cut(s) 670, 984, 1248
DpnII GATC 3 cut(s) 668, 982, 1246
Eam1104I CTCTTC 4 cut(s) 321, 647, 738, 1146
EarI CTCTTC 4 cut(s) 321, 647, 738, 1146
Eco130I CCWWGG 1 cut(s) 309
Eco147I AGGCCT 1 cut(s) 874
Eco32I GATATC 1 cut(s) 360
Eco47I GGWCC 2 cut(s) 1462, 1546
Eco57I CTGAAG 2 cut(s) 21, 1250
Eco81I CCTNAGG 1 cut(s) 52
EcoNI CCTNNNNNAGG 1 cut(s) 1427
EcoO109I RGGNCCY 2 cut(s) 937, 1462
EcoRI GAATTC 1 cut(s) 167
EcoRV GATATC 1 cut(s) 360
EcoT14I CCWWGG 1 cut(s) 309
EcoT22I ATGCAT 1 cut(s) 1330
ErhI CCWWGG 1 cut(s) 309
FaeI CATG 4 cut(s) 128, 299, 313, 1276
FaqI GGGAC 5 cut(s) 9, 209, 719, 1105, 1448
FatI CATG 4 cut(s) 124, 295, 309, 1272
FbaI TGATCA 1 cut(s) 1246
FblI GTMKAC 1 cut(s) 1345
Fnu4HI GCNGC 2 cut(s) 122, 1104
FokI GGATG 4 cut(s) 727, 775, 839, 1509
Fsp4HI GCNGC 2 cut(s) 122, 1104
FspBI CTAG 4 cut(s) 93, 179, 233, 1518
GluI GCNGC 2 cut(s) 122, 1104
GsaI CCCAGC 4 cut(s) 153, 609, 668, 1234
HaeIII GGCC 4 cut(s) 308, 454, 874, 938
HgaI GACGC 2 cut(s) 16, 1154
Hin1II CATG 4 cut(s) 128, 299, 313, 1276
HincII GTYRAC 2 cut(s) 601, 1114
HindII GTYRAC 2 cut(s) 601, 1114
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 2 cut(s) 513, 1287
HphI GGTGA 4 cut(s) 24, 554, 830, 1364
Hpy166II GTNNAC 5 cut(s) 552, 601, 951, 1114, 1346
Hpy188I TCNGA 3 cut(s) 109, 987, 1251
Hpy188III TCNNGA 4 cut(s) 428, 566, 980, 1142
Hpy8I GTNNAC 5 cut(s) 552, 601, 951, 1114, 1346
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 6 cut(s) 45, 857, 928, 1172, 1423, 1559
HpyCH4III ACNGT 2 cut(s) 914, 1255
HpyCH4IV ACGT 1 cut(s) 1489
HpyCH4V TGCA 5 cut(s) 124, 961, 1166, 1328, 1500
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 1172
HpyF3I CTNAG 7 cut(s) 52, 108, 134, 482, 555, 1213, 1467
HpySE526I ACGT 1 cut(s) 1489
Hsp92II CATG 4 cut(s) 128, 299, 313, 1276
Ksp22I TGATCA 1 cut(s) 1246
Kzo9I GATC 3 cut(s) 668, 982, 1246
LguI GCTCTTC 1 cut(s) 321
LmnI GCTCC 1 cut(s) 1021
Lsp1109I GCAGC 2 cut(s) 108, 1090
LweI GCATC 3 cut(s) 370, 948, 1487
MaeI CTAG 4 cut(s) 93, 179, 233, 1518
MaeII ACGT 1 cut(s) 1489
MaeIII GTNAC 5 cut(s) 30, 205, 270, 997, 1408
MalI GATC 3 cut(s) 670, 984, 1248
MboI GATC 3 cut(s) 668, 982, 1246
MboII GAAGA 8 cut(s) 55, 308, 508, 664, 733, 755, 1060, 1163
MluCI AATT 9 cut(s) 167, 243, 352, 375, 459, 519, 892, 1136, 1561
MlyI GAGTC 1 cut(s) 507
MmeI TCCRAC 3 cut(s) 113, 594, 804
Mph1103I ATGCAT 1 cut(s) 1330
MseI TTAA 7 cut(s) 374, 462, 636, 891, 929, 1323, 1394
MslI CAYNNNNRTG 1 cut(s) 1481
MwoI GCNNNNNNNGC 2 cut(s) 320, 1172
NcoI CCATGG 1 cut(s) 309
NdeII GATC 3 cut(s) 668, 982, 1246
NlaIII CATG 4 cut(s) 128, 299, 313, 1276
NlaIV GGNNCC 1 cut(s) 1464
NmeAIII GCCGAG 2 cut(s) 1097, 1306
NmuCI GTSAC 1 cut(s) 30
NsiI ATGCAT 1 cut(s) 1330
NspI RCATGY 2 cut(s) 128, 299
PaeI GCATGC 1 cut(s) 128
PceI AGGCCT 1 cut(s) 874
PciSI GCTCTTC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 1287
PflFI GACNNNGTC 1 cut(s) 10
PkrI GCNGC 2 cut(s) 123, 1105
PleI GAGTC 1 cut(s) 507
PpsI GAGTC 1 cut(s) 507
PpuMI RGGWCCY 1 cut(s) 1462
PshBI ATTAAT 2 cut(s) 636, 1323
Psp5II RGGWCCY 1 cut(s) 1462
PspFI CCCAGC 4 cut(s) 149, 605, 664, 1230
PspN4I GGNNCC 1 cut(s) 1464
PspPI GGNCC 3 cut(s) 937, 1462, 1546
PspPPI RGGWCCY 1 cut(s) 1462
PstNI CAGNNNCTG 1 cut(s) 209
PsyI GACNNNGTC 1 cut(s) 10
RsaI GTAC 2 cut(s) 553, 1263
RsaNI GTAC 2 cut(s) 552, 1262
RseI CAYNNNNRTG 1 cut(s) 1481
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 7 cut(s) 374, 462, 636, 891, 929, 1323, 1394
SatI GCNGC 2 cut(s) 122, 1104
Sau3AI GATC 3 cut(s) 668, 982, 1246
Sau96I GGNCC 3 cut(s) 937, 1462, 1546
ScaI AGTACT 1 cut(s) 1263
SchI GAGTC 1 cut(s) 507
SfaNI GCATC 3 cut(s) 370, 948, 1487
SinI GGWCC 2 cut(s) 1462, 1546
SmiMI CAYNNNNRTG 1 cut(s) 1481
SmlI CTYRAG 1 cut(s) 941
SmoI CTYRAG 1 cut(s) 941
SpeI ACTAGT 1 cut(s) 92
SphI GCATGC 1 cut(s) 128
Sse9I AATT 9 cut(s) 167, 243, 352, 375, 459, 519, 892, 1136, 1561
SseBI AGGCCT 1 cut(s) 874
SsiI CCGC 1 cut(s) 649
SspMI CTAG 4 cut(s) 93, 179, 233, 1518
StuI AGGCCT 1 cut(s) 874
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 2 cut(s) 914, 1255
TaiI ACGT 1 cut(s) 1492
TaqI TCGA 5 cut(s) 325, 346, 884, 1290, 1441
TasI AATT 9 cut(s) 167, 243, 352, 375, 459, 519, 892, 1136, 1561
TatI WGTACW 2 cut(s) 551, 1261
TfiI GAWTC 1 cut(s) 1287
Tru1I TTAA 7 cut(s) 374, 462, 636, 891, 929, 1323, 1394
Tru9I TTAA 7 cut(s) 374, 462, 636, 891, 929, 1323, 1394
TscAI CASTG 2 cut(s) 45, 917
TseFI GTSAC 1 cut(s) 30
TseI GCWGC 2 cut(s) 121, 1103
Tsp45I GTSAC 1 cut(s) 30
TspDTI ATGAA 5 cut(s) 659, 843, 869, 1442, 1530
TspGWI ACGGA 1 cut(s) 1493
TspRI CASTG 2 cut(s) 45, 917
Tth111I GACNNNGTC 1 cut(s) 10
VpaK11BI GGWCC 2 cut(s) 1462, 1546
VspI ATTAAT 2 cut(s) 636, 1323
XagI CCTNNNNNAGG 1 cut(s) 1427
XapI RAATTY 3 cut(s) 167, 243, 1136
XceI RCATGY 2 cut(s) 128, 299
XmiI GTMKAC 1 cut(s) 1345
XspI CTAG 4 cut(s) 93, 179, 233, 1518
ZrmI AGTACT 1 cut(s) 1263
Zsp2I ATGCAT 1 cut(s) 1330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.