Pentatricopeptide repeat domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G42560 AT5G36300 AT5G36300 |
| fragaria_vesca | FvH4_7g33490 FvH4_7g33490 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 |
| malus_domestica | MD01G1232900.v1.1 |
| prunus_persica | Prupe.2G323300_v2.0.a1 |
| pyrus_communis | pycom01g24130 pycom07g27830 |
| rosa_chinensis | RchiOBHm_Chr1g0383591 RchiOBHm_Chr1g0383651 |
| rosa_laevigata | RLG00000026099 |
| rosa_multiflora | Rmu_sc0012471.1_g000010 Rmu_sc0012471.1_g000013 |
| rosa_roxburghii | Rroxscaffold_2G00116820 Rroxscaffold_2G00117690 Rroxscaffold_3G00229630 Rroxscaffold_4G00277240 Rroxscaffold_4G00302110 Rroxscaffold_5G00350700 Rroxscaffold_5G00350710 Rroxscaffold_7G00181950 |
| rosa_rugosa | Rorug01G0442100 Rorug01G0442200 |
| rosa_samantha | Rh1AG467600 Rh1AG467800 Rh1BG425300 Rh1CG437900 Rh1CG438100 Rh1DG458100 |
| rosa_wichuraiana | Rw1G040460 Rw1G040480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 39 |
| AgsI | TTSAA | 1 cut(s) | 205 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 197, 229 |
| AluBI | AGCT | 3 cut(s) | 26, 107, 221 |
| AluI | AGCT | 3 cut(s) | 26, 107, 221 |
| AoxI | GGCC | 1 cut(s) | 39 |
| BalI | TGGCCA | 1 cut(s) | 41 |
| BccI | CCATC | 1 cut(s) | 136 |
| BceAI | ACGGC | 1 cut(s) | 184 |
| BseGI | GGATG | 2 cut(s) | 99, 147 |
| BshFI | GGCC | 1 cut(s) | 41 |
| BslFI | GGGAC | 1 cut(s) | 98 |
| BsmFI | GGGAC | 1 cut(s) | 98 |
| BsnI | GGCC | 1 cut(s) | 41 |
| BspANI | GGCC | 1 cut(s) | 41 |
| BspQI | GCTCTTC | 1 cut(s) | 51 |
| Bst6I | CTCTTC | 2 cut(s) | 51, 117 |
| BstC8I | GCNNGC | 1 cut(s) | 24 |
| BstF5I | GGATG | 2 cut(s) | 99, 147 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 32 |
| BsuRI | GGCC | 1 cut(s) | 41 |
| BtsCI | GGATG | 2 cut(s) | 99, 147 |
| Cac8I | GCNNGC | 1 cut(s) | 24 |
| CviJI | RGCY | 6 cut(s) | 16, 26, 35, 41, 107, 221 |
| CviKI_1 | RGCY | 6 cut(s) | 16, 26, 35, 41, 107, 221 |
| EaeI | YGGCCR | 1 cut(s) | 39 |
| Eam1104I | CTCTTC | 2 cut(s) | 51, 117 |
| EarI | CTCTTC | 2 cut(s) | 51, 117 |
| FaiI | YATR | 3 cut(s) | 44, 110, 195 |
| FaqI | GGGAC | 1 cut(s) | 98 |
| FokI | GGATG | 2 cut(s) | 106, 154 |
| HaeIII | GGCC | 1 cut(s) | 41 |
| HindIII | AAGCTT | 1 cut(s) | 219 |
| HpyCH4V | TGCA | 1 cut(s) | 22 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 32 |
| LguI | GCTCTTC | 1 cut(s) | 51 |
| LpnPI | CCDG | 1 cut(s) | 2 |
| MboII | GAAGA | 3 cut(s) | 68, 112, 134 |
| MlsI | TGGCCA | 1 cut(s) | 41 |
| MluCI | AATT | 1 cut(s) | 45 |
| MluNI | TGGCCA | 1 cut(s) | 41 |
| MmeI | TCCRAC | 1 cut(s) | 48 |
| MnlI | CCTC | 1 cut(s) | 74 |
| Mox20I | TGGCCA | 1 cut(s) | 41 |
| MscI | TGGCCA | 1 cut(s) | 41 |
| MseI | TTAA | 1 cut(s) | 235 |
| Msp20I | TGGCCA | 1 cut(s) | 41 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 32 |
| PciSI | GCTCTTC | 1 cut(s) | 51 |
| SapI | GCTCTTC | 1 cut(s) | 51 |
| SaqAI | TTAA | 1 cut(s) | 235 |
| SetI | ASST | 5 cut(s) | 28, 68, 109, 223, 234 |
| SgeI | CNNG | 2 cut(s) | 29, 35 |
| Sse9I | AATT | 1 cut(s) | 45 |
| TasI | AATT | 1 cut(s) | 45 |
| Tru1I | TTAA | 1 cut(s) | 235 |
| Tru9I | TTAA | 1 cut(s) | 235 |
| TspDTI | ATGAA | 1 cut(s) | 222 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 49 |