FvH4_7g33490

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002642
Physical Location & Seq
Forward (+)
23812344 .. 23816318
3975 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g33490.t2

Sequence Viewer

Length: 1542 bp
ATGCTGACGCAGTCCATTTTGTGTCCCACGTCACCTTCACTGTCATCATCCTCAGGTAGCTTCTTCACTTCTCTCTCTTTGCTCTGCCCAACTTGTCTCAAACACTCTCACAAACACAAGCTCCATGCTTCTCTGACTCACTCAAATCCCAACTTTCTAGCTTTAAACGACCAAACTCATTCAATTTCTGACCACCCAAATGGCCCGAGTATAGGAGAGGAGATTTCTTTTGAGTACAACAGTTCGTTACAGGACTTTTGTAGAGCTGGGCATGTTGACAAGGCCATGGCTCTTCTTGCTCAAATGGAAGCTATTGGATTAAGACCCAATTCGGTATCGTATTCTTATATGATTGATGCTTTAGGAAGTATAGGCAGGACTTTGGAGGCTGATGTATTGTTTCAGGAGATGATATTTCTGGGGTATAGGCCAAGAATAAAGCTTTACAATGTTTTGCTTAGAGGGTTTTTGAAGAAAGGTTTGTTAGGACTTGCAGTTAGAGTTTTGGGGGTGATGGGTGATTTGGGTGCTGAGAGAAATCAAGAAACATATGAGATTTTACTTGATTACTATGTCAGTGCTGGGAGGTTGGAGGATACTTGGTCAATGATTAATGAGATGAGGAGGAAGAGGTTTCGGCTGAGCTCGTTTGTGTATAGTAAGGTTATTGGTCTGTATAGGGACAATGGGATGTGGAAGAAGGCGGTGGACATTGTGGAAGAGATAAGGGAAATGGGGATGGCATTGGACAAACAGATTTACAACAGCATTATCGATACGTTTGGGAAGTATGGGGAGTTGGATGAAGCTTTGGAAGTGTTTGGGAGAATGAAAGAAGAAGGTGTCAGGCCTGATATTTCGACCTTTAATTCGTTGATAAGGTGGCACTGCAAGTCTGGGTTGTTAAAGAAGGCCCTTGAGTTGTTTATTGAGATGCAAGAACAAGGATTATATCCTGATCCGAAGATATTTGTTACTATTATCAGTAGATTGGGGGAGCAAGGGAAGTGGGATATGATACGGAGGACCTTTGAGAATATGAGAAGCCGTGGCCATAAAAAAAGTGGGACTATTTATGCTGCTCTCGTTGACATTTATGGGGAATATGGAAAATTTCAGGACGCAGAAGAGTGTATATCTGCACTAAAGGCAGAAGGTCTTGTTATCTCTGCCAGTATGTTTTGTGTCTTAGCAAATGCATACGCCCAGCAGGGATTATGTGATCAGACAGTTAAAGTACTTCAGCTCATGGAAGCTGAGGGAATTGAACCAAATGTTATAATGCTGAATGTTTTGATCAATGCATTTGGTATTGCTGGTAGACATTTGGAGGCTTTGTCCATTTATCACCATATAAAAGAAAGTGGTTTAAGCCCTGATGTAGTTACTTATACTACCCTTATGAAGGCGTTTATTCGAGCAAGGAAGTATGATAGGGTCCCTGAGATATACATGGATATGGAACAGGCTGGATGCACCCCAGATAGGAAGGCCAGACAGATGTTAGAAGTTGCTTCATTGGTCCTTCAACAGAGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

514

Amino Acids

57.89

Weight (kDa)

6.69

Isoelectric Point (pI)

37.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 79 - 121 2.5e-09 PPR repeat family
PPR_2 PF13041 180 - 223 2.4e-06 PPR repeat family
TPR_24 PF23276 228 - 325 1.4e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 238 - 294 9.3e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 246 - 278 1e-05 PPR repeat
PPR_2 PF13041 253 - 298 1.3e-12 PPR repeat family
PPR PF01535 253 - 282 2.7e-07 PPR repeat
PPR_1 PF12854 281 - 313 2.2e-09 PPR repeat
PPR_2 PF13041 284 - 320 3.3e-10 PPR repeat family
PPR PF01535 287 - 317 8.7e-09 PPR repeat
TPR_24 PF23276 327 - 451 1.7e-07 Fungal tetratrico peptide repeats
TPR_24 PF23276 367 - 484 5.6e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 382 - 437 1.6e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 424 - 472 1.3e-11 PPR repeat family
PPR_3 PF13812 447 - 495 8.9e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 459 - 496 4.1e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1280
AccI GTMKAC 1 cut(s) 1321
AciI CCGC 1 cut(s) 704
AclWI GGATC 1 cut(s) 953
AcoI YGGCCR 1 cut(s) 1051
AcsI RAATTY 1 cut(s) 1112
AcuI CTGAAG 1 cut(s) 1226
AfaI GTAC 2 cut(s) 236, 1239
AfiI CCNNNNNNNGG 3 cut(s) 212, 1405, 1485
AgsI TTSAA 4 cut(s) 183, 472, 1268, 1529
AjiI CACGTC 1 cut(s) 30
Alw21I GWGCWC 1 cut(s) 647
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 1 cut(s) 953
Ama87I CYCGRG 1 cut(s) 205
AoxI GGCC 7 cut(s) 202, 282, 428, 848, 912, 1051, 1491
ApeKI GCWGC 1 cut(s) 1079
ApoI RAATTY 1 cut(s) 1112
ArsI GACNNNNNNTTYG 2 cut(s) 853, 885
AseI ATTAAT 1 cut(s) 612
AspS9I GGNCC 5 cut(s) 203, 913, 1026, 1438, 1522
AsuHPI GGTGA 4 cut(s) 24, 523, 530, 1340
AvaI CYCGRG 1 cut(s) 205
AvaII GGWCC 3 cut(s) 1026, 1438, 1522
AxyI CCTNAGG 1 cut(s) 52
BalI TGGCCA 1 cut(s) 1053
BanII GRGCYC 1 cut(s) 647
Bbv12I GWGCWC 1 cut(s) 647
BbvCI CCTCAGC 1 cut(s) 1257
BbvI GCAGC 1 cut(s) 1066
BccI CCATC 2 cut(s) 508, 733
BceAI ACGGC 1 cut(s) 1032
BciVI GTATCC 1 cut(s) 589
BclI TGATCA 2 cut(s) 1222, 1296
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 1 cut(s) 158
BfuI GTATCC 1 cut(s) 589
BisI GCNGC 1 cut(s) 1080
BlpI GCTNAGC 1 cut(s) 641
BlsI GCNGC 1 cut(s) 1081
BmcAI AGTACT 1 cut(s) 1239
Bme18I GGWCC 3 cut(s) 1026, 1438, 1522
BmeT110I CYCGRG 1 cut(s) 205
BmgBI CACGTC 1 cut(s) 30
BmgT120I GGNCC 5 cut(s) 203, 913, 1026, 1438, 1522
BmiI GGNNCC 2 cut(s) 1439, 1440
BmsI GCATC 3 cut(s) 346, 924, 1463
Bpu10I CCTNAGC 1 cut(s) 1257
Bpu1102I GCTNAGC 1 cut(s) 641
BpuEI CTTGAG 1 cut(s) 938
Bsa29I ATCGAT 1 cut(s) 774
BsaJI CCNNGG 2 cut(s) 285, 1048
BsaXI ACNNNNNCTCC 4 cut(s) 105, 135, 1322, 1352
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 1405, 1485
Bse1I ACTGG 1 cut(s) 1173
Bse21I CCTNAGG 1 cut(s) 52
BseCI ATCGAT 1 cut(s) 774
BseDI CCNNGG 2 cut(s) 285, 1048
BseGI GGATG 5 cut(s) 47, 696, 744, 808, 1478
BseLI CCNNNNNNNGG 3 cut(s) 212, 1405, 1485
BseMII CTCAG 5 cut(s) 66, 522, 632, 1248, 1434
BseNI ACTGG 1 cut(s) 1173
BseRI GAGGAG 2 cut(s) 233, 637
BseXI GCAGC 1 cut(s) 1066
BseYI CCCAGC 3 cut(s) 266, 581, 1206
BsgI GTGCAG 1 cut(s) 1125
BshFI GGCC 7 cut(s) 204, 284, 430, 850, 914, 1053, 1493
BshVI ATCGAT 1 cut(s) 774
BsiHKAI GWGCWC 1 cut(s) 647
BsiHKCI CYCGRG 1 cut(s) 205
BslFI GGGAC 4 cut(s) 9, 695, 1081, 1424
BslI CCNNNNNNNGG 3 cut(s) 212, 1405, 1485
BsmAI GTCTC 1 cut(s) 101
BsmFI GGGAC 4 cut(s) 9, 695, 1081, 1424
BsnI GGCC 7 cut(s) 204, 284, 430, 850, 914, 1053, 1493
BsoBI CYCGRG 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 647
Bsp143I GATC 3 cut(s) 958, 1222, 1296
Bsp1720I GCTNAGC 1 cut(s) 641
Bsp19I CCATGG 1 cut(s) 285
BspACI CCGC 1 cut(s) 704
BspANI GGCC 7 cut(s) 204, 284, 430, 850, 914, 1053, 1493
BspCNI CTCAG 5 cut(s) 65, 523, 633, 1249, 1435
BspDI ATCGAT 1 cut(s) 774
BspLI GGNNCC 2 cut(s) 1439, 1440
BspPI GGATC 1 cut(s) 953
BspQI GCTCTTC 1 cut(s) 297
BsrI ACTGG 1 cut(s) 1173
BssECI CCNNGG 2 cut(s) 285, 1048
BssMI GATC 3 cut(s) 958, 1222, 1296
BssT1I CCWWGG 1 cut(s) 285
Bst4CI ACNGT 3 cut(s) 42, 242, 1231
Bst6I CTCTTC 4 cut(s) 297, 623, 714, 1122
BstDEI CTNAG 7 cut(s) 52, 458, 531, 641, 1189, 1257, 1443
BstDSI CCRYGG 2 cut(s) 285, 1048
BstENI CCTNNNNNAGG 1 cut(s) 1403
BstF5I GGATG 5 cut(s) 47, 696, 744, 808, 1478
BstKTI GATC 3 cut(s) 961, 1225, 1299
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 3 cut(s) 958, 1222, 1296
BstMWI GCNNNNNNNGC 2 cut(s) 296, 1148
BstNSI RCATGY 1 cut(s) 275
BstV1I GCAGC 1 cut(s) 1066
BstXI CCANNNNNNTGG 1 cut(s) 200
Bsu15I ATCGAT 1 cut(s) 774
Bsu36I CCTNAGG 1 cut(s) 52
BsuI GTATCC 1 cut(s) 589
BsuRI GGCC 7 cut(s) 204, 284, 430, 850, 914, 1053, 1493
BsuTUI ATCGAT 1 cut(s) 774
BtgI CCRYGG 2 cut(s) 285, 1048
BtrI CACGTC 1 cut(s) 30
BtsCI GGATG 5 cut(s) 47, 696, 744, 808, 1478
BtsI GCAGTG 1 cut(s) 886
BtsIMutI CAGTG 3 cut(s) 38, 583, 886
Cfr13I GGNCC 5 cut(s) 203, 913, 1026, 1438, 1522
ClaI ATCGAT 1 cut(s) 774
CseI GACGC 2 cut(s) 16, 1130
Csp6I GTAC 2 cut(s) 235, 1238
CspCI CAANNNNNGTGG 2 cut(s) 989, 1024
CviAII CATG 5 cut(s) 125, 272, 286, 1249, 1453
CviQI GTAC 2 cut(s) 235, 1238
DdeI CTNAG 7 cut(s) 52, 458, 531, 641, 1189, 1257, 1443
DpnI GATC 3 cut(s) 960, 1224, 1298
DpnII GATC 3 cut(s) 958, 1222, 1296
DraI TTTAAA 1 cut(s) 165
EaeI YGGCCR 1 cut(s) 1051
Eam1104I CTCTTC 4 cut(s) 297, 623, 714, 1122
EarI CTCTTC 4 cut(s) 297, 623, 714, 1122
Ecl136II GAGCTC 1 cut(s) 645
Eco130I CCWWGG 1 cut(s) 285
Eco147I AGGCCT 1 cut(s) 850
Eco24I GRGCYC 1 cut(s) 647
Eco47I GGWCC 3 cut(s) 1026, 1438, 1522
Eco53kI GAGCTC 1 cut(s) 645
Eco57I CTGAAG 1 cut(s) 1226
Eco81I CCTNAGG 1 cut(s) 52
Eco88I CYCGRG 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 645
EcoNI CCTNNNNNAGG 1 cut(s) 1403
EcoO109I RGGNCCY 3 cut(s) 913, 1026, 1438
EcoT14I CCWWGG 1 cut(s) 285
EcoT22I ATGCAT 2 cut(s) 1201, 1306
EcoT38I GRGCYC 1 cut(s) 647
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 5 cut(s) 128, 275, 289, 1252, 1456
FaqI GGGAC 4 cut(s) 9, 695, 1081, 1424
FatI CATG 5 cut(s) 124, 271, 285, 1248, 1452
FauNDI CATATG 1 cut(s) 550
FbaI TGATCA 2 cut(s) 1222, 1296
FblI GTMKAC 1 cut(s) 1321
Fnu4HI GCNGC 1 cut(s) 1080
FokI GGATG 5 cut(s) 34, 703, 751, 815, 1485
FriOI GRGCYC 1 cut(s) 647
Fsp4HI GCNGC 1 cut(s) 1080
FspBI CTAG 1 cut(s) 158
GluI GCNGC 1 cut(s) 1080
GsaI CCCAGC 3 cut(s) 270, 585, 1210
HaeIII GGCC 7 cut(s) 204, 284, 430, 850, 914, 1053, 1493
HgaI GACGC 2 cut(s) 16, 1130
Hin1II CATG 5 cut(s) 128, 275, 289, 1252, 1456
HincII GTYRAC 2 cut(s) 277, 1090
HindII GTYRAC 2 cut(s) 277, 1090
HindIII AAGCTT 2 cut(s) 440, 807
HinfI GANTC 1 cut(s) 136
HphI GGTGA 4 cut(s) 24, 523, 530, 1340
Hpy166II GTNNAC 4 cut(s) 277, 709, 1090, 1322
Hpy188I TCNGA 4 cut(s) 135, 190, 963, 1227
Hpy188III TCNNGA 4 cut(s) 404, 542, 956, 1118
Hpy8I GTNNAC 4 cut(s) 277, 709, 1090, 1322
HpyAV CCTTC 8 cut(s) 45, 694, 833, 904, 1148, 1399, 1483, 1535
HpyCH4III ACNGT 3 cut(s) 42, 242, 1231
HpyCH4IV ACGT 2 cut(s) 29, 779
HpyCH4V TGCA 7 cut(s) 494, 891, 937, 1142, 1199, 1304, 1476
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 1148
HpyF3I CTNAG 7 cut(s) 52, 458, 531, 641, 1189, 1257, 1443
HpySE526I ACGT 2 cut(s) 29, 779
Hsp92II CATG 5 cut(s) 128, 275, 289, 1252, 1456
KflI GGGWCCC 1 cut(s) 1438
Ksp22I TGATCA 2 cut(s) 1222, 1296
Kzo9I GATC 3 cut(s) 958, 1222, 1296
LguI GCTCTTC 1 cut(s) 297
LmnI GCTCC 2 cut(s) 126, 997
Lsp1109I GCAGC 1 cut(s) 1066
LweI GCATC 3 cut(s) 346, 924, 1463
MaeI CTAG 1 cut(s) 158
MaeII ACGT 2 cut(s) 29, 779
MaeIII GTNAC 4 cut(s) 30, 246, 973, 1384
MalI GATC 3 cut(s) 960, 1224, 1298
MboI GATC 3 cut(s) 958, 1222, 1296
MboII GAAGA 9 cut(s) 55, 284, 484, 640, 709, 731, 848, 976, 1139
MhlI GDGCHC 1 cut(s) 647
MlsI TGGCCA 1 cut(s) 1053
MluCI AATT 6 cut(s) 183, 328, 868, 1112, 1263, 1537
MluNI TGGCCA 1 cut(s) 1053
MlyI GAGTC 1 cut(s) 130
MmeI TCCRAC 2 cut(s) 570, 780
Mox20I TGGCCA 1 cut(s) 1053
Mph1103I ATGCAT 2 cut(s) 1201, 1306
MscI TGGCCA 1 cut(s) 1053
MseI TTAA 7 cut(s) 164, 320, 612, 867, 905, 1233, 1370
MslI CAYNNNNRTG 2 cut(s) 198, 1457
Msp20I TGGCCA 1 cut(s) 1053
MwoI GCNNNNNNNGC 2 cut(s) 296, 1148
NcoI CCATGG 1 cut(s) 285
NdeI CATATG 1 cut(s) 550
NdeII GATC 3 cut(s) 958, 1222, 1296
NlaIII CATG 5 cut(s) 128, 275, 289, 1252, 1456
NlaIV GGNNCC 2 cut(s) 1439, 1440
NmuCI GTSAC 1 cut(s) 30
NsiI ATGCAT 2 cut(s) 1201, 1306
NspI RCATGY 1 cut(s) 275
PceI AGGCCT 1 cut(s) 850
PciSI GCTCTTC 1 cut(s) 297
PflFI GACNNNGTC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 1081
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PpuMI RGGWCCY 2 cut(s) 1026, 1438
PshBI ATTAAT 1 cut(s) 612
PsiI TTATAA 1 cut(s) 1280
Psp124BI GAGCTC 1 cut(s) 647
Psp5II RGGWCCY 2 cut(s) 1026, 1438
PspFI CCCAGC 3 cut(s) 266, 581, 1206
PspN4I GGNNCC 2 cut(s) 1439, 1440
PspPI GGNCC 5 cut(s) 203, 913, 1026, 1438, 1522
PspPPI RGGWCCY 2 cut(s) 1026, 1438
PsyI GACNNNGTC 1 cut(s) 10
RsaI GTAC 2 cut(s) 236, 1239
RsaNI GTAC 2 cut(s) 235, 1238
RseI CAYNNNNRTG 2 cut(s) 198, 1457
SacI GAGCTC 1 cut(s) 647
SapI GCTCTTC 1 cut(s) 297
SaqAI TTAA 7 cut(s) 164, 320, 612, 867, 905, 1233, 1370
SatI GCNGC 1 cut(s) 1080
Sau3AI GATC 3 cut(s) 958, 1222, 1296
Sau96I GGNCC 5 cut(s) 203, 913, 1026, 1438, 1522
ScaI AGTACT 1 cut(s) 1239
SchI GAGTC 1 cut(s) 130
SduI GDGCHC 1 cut(s) 647
SfaNI GCATC 3 cut(s) 346, 924, 1463
SinI GGWCC 3 cut(s) 1026, 1438, 1522
SmiMI CAYNNNNRTG 2 cut(s) 198, 1457
SmlI CTYRAG 1 cut(s) 917
SmoI CTYRAG 1 cut(s) 917
Sse9I AATT 6 cut(s) 183, 328, 868, 1112, 1263, 1537
SseBI AGGCCT 1 cut(s) 850
SsiI CCGC 1 cut(s) 704
SspMI CTAG 1 cut(s) 158
SstI GAGCTC 1 cut(s) 647
StuI AGGCCT 1 cut(s) 850
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 3 cut(s) 42, 242, 1231
TaiI ACGT 2 cut(s) 32, 782
TaqI TCGA 3 cut(s) 774, 860, 1417
TasI AATT 6 cut(s) 183, 328, 868, 1112, 1263, 1537
TatI WGTACW 2 cut(s) 234, 1237
Tru1I TTAA 7 cut(s) 164, 320, 612, 867, 905, 1233, 1370
Tru9I TTAA 7 cut(s) 164, 320, 612, 867, 905, 1233, 1370
TscAI CASTG 3 cut(s) 45, 583, 893
TseFI GTSAC 1 cut(s) 30
TseI GCWGC 1 cut(s) 1079
Tsp45I GTSAC 1 cut(s) 30
TspDTI ATGAA 4 cut(s) 819, 845, 1418, 1506
TspGWI ACGGA 1 cut(s) 1036
TspRI CASTG 3 cut(s) 45, 583, 893
Tth111I GACNNNGTC 1 cut(s) 10
VpaK11BI GGWCC 3 cut(s) 1026, 1438, 1522
VspI ATTAAT 1 cut(s) 612
XagI CCTNNNNNAGG 1 cut(s) 1403
XapI RAATTY 1 cut(s) 1112
XceI RCATGY 1 cut(s) 275
XcmI CCANNNNNNNNNTGG 1 cut(s) 1061
XmiI GTMKAC 1 cut(s) 1321
XspI CTAG 1 cut(s) 158
ZrmI AGTACT 1 cut(s) 1239
Zsp2I ATGCAT 2 cut(s) 1201, 1306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.