Pentatricopeptide repeat domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G42560 AT5G36300 AT5G36300 |
| fragaria_vesca | FvH4_7g33490 FvH4_7g33490 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 |
| malus_domestica | MD01G1232900.v1.1 |
| prunus_persica | Prupe.2G323300_v2.0.a1 |
| pyrus_communis | pycom01g24130 pycom07g27830 |
| rosa_chinensis | RchiOBHm_Chr1g0383591 RchiOBHm_Chr1g0383651 |
| rosa_laevigata | RLG00000026099 |
| rosa_multiflora | Rmu_sc0012471.1_g000010 Rmu_sc0012471.1_g000013 |
| rosa_roxburghii | Rroxscaffold_2G00116820 Rroxscaffold_2G00117690 Rroxscaffold_3G00229630 Rroxscaffold_4G00277240 Rroxscaffold_4G00302110 Rroxscaffold_5G00350700 Rroxscaffold_5G00350710 Rroxscaffold_7G00181950 |
| rosa_rugosa | Rorug01G0442100 Rorug01G0442200 |
| rosa_samantha | Rh1AG467600 Rh1AG467800 Rh1BG425300 Rh1CG437900 Rh1CG438100 Rh1DG458100 |
| rosa_wichuraiana | Rw1G040460 Rw1G040480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 340 |
| AclWI | GGATC | 1 cut(s) | 367 |
| AfaI | GTAC | 1 cut(s) | 244 |
| AflIII | ACRYGT | 1 cut(s) | 500 |
| AgsI | TTSAA | 1 cut(s) | 187 |
| AluBI | AGCT | 2 cut(s) | 26, 157 |
| AluI | AGCT | 2 cut(s) | 26, 157 |
| AlwI | GGATC | 1 cut(s) | 367 |
| AoxI | GGCC | 1 cut(s) | 143 |
| AseI | ATTAAT | 1 cut(s) | 327 |
| AsuHPI | GGTGA | 1 cut(s) | 245 |
| BccI | CCATC | 1 cut(s) | 448 |
| BciVI | GTATCC | 2 cut(s) | 61, 304 |
| BfaI | CTAG | 1 cut(s) | 77 |
| BfmI | CTRYAG | 1 cut(s) | 55 |
| BfuI | GTATCC | 2 cut(s) | 61, 304 |
| BmsI | GCATC | 1 cut(s) | 61 |
| Bse3DI | GCAATG | 1 cut(s) | 426 |
| BseGI | GGATG | 2 cut(s) | 411, 459 |
| BseMI | GCAATG | 1 cut(s) | 426 |
| BseMII | CTCAG | 1 cut(s) | 237 |
| BseYI | CCCAGC | 2 cut(s) | 296, 355 |
| BshFI | GGCC | 1 cut(s) | 145 |
| BslFI | GGGAC | 1 cut(s) | 410 |
| BsmFI | GGGAC | 1 cut(s) | 410 |
| BsnI | GGCC | 1 cut(s) | 145 |
| Bsp143I | GATC | 1 cut(s) | 359 |
| BspACI | CCGC | 1 cut(s) | 340 |
| BspANI | GGCC | 1 cut(s) | 145 |
| BspCNI | CTCAG | 1 cut(s) | 238 |
| BspPI | GGATC | 1 cut(s) | 367 |
| BspQI | GCTCTTC | 1 cut(s) | 12 |
| BsrDI | GCAATG | 1 cut(s) | 426 |
| BssMI | GATC | 1 cut(s) | 359 |
| Bst4CI | ACNGT | 2 cut(s) | 59, 482 |
| Bst6I | CTCTTC | 3 cut(s) | 12, 338, 429 |
| BstDEI | CTNAG | 2 cut(s) | 173, 246 |
| BstF5I | GGATG | 2 cut(s) | 411, 459 |
| BstKTI | GATC | 1 cut(s) | 362 |
| BstMBI | GATC | 1 cut(s) | 359 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 11 |
| BstNSI | RCATGY | 1 cut(s) | 504 |
| BstSFI | CTRYAG | 1 cut(s) | 55 |
| BsuI | GTATCC | 2 cut(s) | 61, 304 |
| BsuRI | GGCC | 1 cut(s) | 145 |
| BtsCI | GGATG | 2 cut(s) | 411, 459 |
| Csp6I | GTAC | 1 cut(s) | 243 |
| CviAII | CATG | 2 cut(s) | 501, 536 |
| CviJI | RGCY | 7 cut(s) | 5, 26, 33, 104, 145, 157, 355 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 26, 33, 104, 145, 157, 355 |
| CviQI | GTAC | 1 cut(s) | 243 |
| DdeI | CTNAG | 2 cut(s) | 173, 246 |
| DpnI | GATC | 1 cut(s) | 361 |
| DpnII | GATC | 1 cut(s) | 359 |
| Eam1104I | CTCTTC | 3 cut(s) | 12, 338, 429 |
| EarI | CTCTTC | 3 cut(s) | 12, 338, 429 |
| FaeI | CATG | 2 cut(s) | 504, 539 |
| FaqI | GGGAC | 1 cut(s) | 410 |
| FatI | CATG | 2 cut(s) | 500, 535 |
| FokI | GGATG | 2 cut(s) | 418, 466 |
| FspBI | CTAG | 1 cut(s) | 77 |
| GsaI | CCCAGC | 2 cut(s) | 300, 359 |
| HaeIII | GGCC | 1 cut(s) | 145 |
| Hin1II | CATG | 2 cut(s) | 504, 539 |
| HindIII | AAGCTT | 1 cut(s) | 155 |
| HphI | GGTGA | 1 cut(s) | 245 |
| Hpy188III | TCNNGA | 2 cut(s) | 119, 257 |
| HpyCH4III | ACNGT | 2 cut(s) | 59, 482 |
| HpyCH4V | TGCA | 1 cut(s) | 209 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 11 |
| HpyF3I | CTNAG | 2 cut(s) | 173, 246 |
| Hsp92II | CATG | 2 cut(s) | 504, 539 |
| Kzo9I | GATC | 1 cut(s) | 359 |
| LguI | GCTCTTC | 1 cut(s) | 12 |
| LpnPI | CCDG | 3 cut(s) | 104, 282, 341 |
| LweI | GCATC | 1 cut(s) | 61 |
| MaeI | CTAG | 1 cut(s) | 77 |
| MalI | GATC | 1 cut(s) | 361 |
| MboI | GATC | 1 cut(s) | 359 |
| MboII | GAAGA | 4 cut(s) | 199, 355, 424, 446 |
| MluCI | AATT | 4 cut(s) | 43, 66, 150, 210 |
| MmeI | TCCRAC | 1 cut(s) | 285 |
| MnlI | CCTC | 6 cut(s) | 84, 94, 170, 294, 301, 339 |
| MseI | TTAA | 2 cut(s) | 153, 327 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 11 |
| NdeII | GATC | 1 cut(s) | 359 |
| NlaIII | CATG | 2 cut(s) | 504, 539 |
| NspI | RCATGY | 1 cut(s) | 504 |
| PciI | ACATGT | 1 cut(s) | 500 |
| PciSI | GCTCTTC | 1 cut(s) | 12 |
| PscI | ACATGT | 1 cut(s) | 500 |
| PshBI | ATTAAT | 1 cut(s) | 327 |
| PspFI | CCCAGC | 2 cut(s) | 296, 355 |
| RsaI | GTAC | 1 cut(s) | 244 |
| RsaNI | GTAC | 1 cut(s) | 243 |
| SapI | GCTCTTC | 1 cut(s) | 12 |
| SaqAI | TTAA | 2 cut(s) | 153, 327 |
| Sau3AI | GATC | 1 cut(s) | 359 |
| SetI | ASST | 6 cut(s) | 28, 159, 196, 305, 350, 381 |
| SfaNI | GCATC | 1 cut(s) | 61 |
| SfcI | CTRYAG | 1 cut(s) | 55 |
| Sse9I | AATT | 4 cut(s) | 43, 66, 150, 210 |
| SsiI | CCGC | 1 cut(s) | 340 |
| SspMI | CTAG | 1 cut(s) | 77 |
| TaaI | ACNGT | 2 cut(s) | 59, 482 |
| TaqI | TCGA | 2 cut(s) | 37, 256 |
| TasI | AATT | 4 cut(s) | 43, 66, 150, 210 |
| Tru1I | TTAA | 2 cut(s) | 153, 327 |
| Tru9I | TTAA | 2 cut(s) | 153, 327 |
| TspDTI | ATGAA | 4 cut(s) | 35, 350, 503, 510 |
| VspI | ATTAAT | 1 cut(s) | 327 |
| XceI | RCATGY | 1 cut(s) | 504 |
| XspI | CTAG | 1 cut(s) | 77 |