Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002642

Physical Location & Seq

Genomic Coordinates Forward (+)

53954881 .. 53955882

Gene Structure 1002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0442200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTCTCTGCTAGCTTGGAAGGTTTTAAAAGGTAGAGTGATTTCTGATGATTTTTTACAGCGAAGGGGAGTAGCTTTGGTCTCTCGTTGTGATCTTTGTGGTATCGATTCTGAATCTCTTGATCACATTTTTCTTAATTGCTCTTTTACGGCTGCAATATGGAGTCATTTTACTTCTCTCTTTGAGTTGGGTGGAGTTCCTCCCTCAATTTTGGAGGGTTTACAAGTGGGTATGGTTGTAGGAAGAAGTGGACAGCTTAAAGACTTATGGTTGATTTGTTTCACTTCAATATTGTGGTTTGTATGGAATGCTAGAAACAAAATGAGACATGAGGGGAAGGTGTTTTCAGTTGGTACTATTTGTAGGCTTATCTCTTGTCATATTCAAGCAGCTAGTCGTTTGGCAACAGGTACCATGCATAATTCCATCCAATATCTACGCATTTTGAAAGCCTTTGGGGCCCATTGCAGATTGCGTCGTGCCCCTAGAGTGATAGAGGTGAATTGGCATCCCCCATTGATTGGTTGGGTTAAGATTAATTCTGATGGAGCTTGGAAACATGATGAGGGGGTTGGAGGTTATGGGGCTGTGTTTAGGGATCATATGAGACGTTTTCTTGGAGCTTTTGCTTCTAATATTGAGATTCCTAGTTCCATTGCGGCAGAGGTGATGGCTGTGATTAAGGCAATTGAGCTGGCATGGGTTCGTGATTGGAAGCACGTATGGCTAGAAGTGGACTCTTCTCTTATTCTGGATTTTATTAAATCTCCTTTGTTGGTCCCCTGGCAACTTCGTATTAGCTGGCTCAATTGCTTGTTCAAGATTTCTCAAATGACTTTTCGTGTATCTCATATTTTTCGTGAAGGTAATAAGGTAGCTGATGCTTTGGCGAATTATGGTACGACTGCTCCTAATATGGTGTGGTGGGATGCTCCACCATCTTTTCTTTTATCGCATTGTCAGAGTGACCAATTAGGTTTTCCCCAATTTCGGTTACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

333

Amino Acids

37.76

Weight (kDa)

9.33

Isoelectric Point (pI)

51.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	2 - 54	1.3e-12	zinc-binding in reverse transcriptase
RVT_3	PF13456	180 - 299	9.1e-20	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42560 AT5G36300 AT5G36300
fragaria_vesca	FvH4_7g33490 FvH4_7g33490 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530
malus_domestica	MD01G1232900.v1.1
prunus_persica	Prupe.2G323300_v2.0.a1
pyrus_communis	pycom01g24130 pycom07g27830
rosa_chinensis	RchiOBHm_Chr1g0383591 RchiOBHm_Chr1g0383651
rosa_laevigata	RLG00000026099
rosa_multiflora	Rmu_sc0012471.1_g000010 Rmu_sc0012471.1_g000013
rosa_roxburghii	Rroxscaffold_2G00116820 Rroxscaffold_2G00117690 Rroxscaffold_3G00229630 Rroxscaffold_4G00277240 Rroxscaffold_4G00302110 Rroxscaffold_5G00350700 Rroxscaffold_5G00350710 Rroxscaffold_7G00181950
rosa_rugosa	Rorug01G0442100 Rorug01G0442200
rosa_samantha	Rh1AG467600 Rh1AG467800 Rh1BG425300 Rh1CG437900 Rh1CG438100 Rh1DG458100
rosa_wichuraiana	Rw1G040460 Rw1G040480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	410
AccB1I	GGYRCC	1 cut(s)	410
AccB7I	CCANNNNNTGG	1 cut(s)	521
AciI	CCGC	1 cut(s)	659
AclWI	GGATC	1 cut(s)	606
AfaI	GTAC	3 cut(s)	355, 412, 901
AfiI	CCNNNNNNNGG	2 cut(s)	521, 990
AgsI	TTSAA	4 cut(s)	288, 386, 448, 820
AjnI	CCWGG	1 cut(s)	782
AjuI	GAANNNNNNNTTGG	2 cut(s)	963, 995
AluBI	AGCT	9 cut(s)	14, 74, 256, 392, 551, 623, 694, 801, 878
AluI	AGCT	9 cut(s)	14, 74, 256, 392, 551, 623, 694, 801, 878
Alw26I	GTCTC	4 cut(s)	9, 85, 319, 601
AlwI	GGATC	1 cut(s)	606
AoxI	GGCC	1 cut(s)	459
ApaI	GGGCCC	1 cut(s)	463
ApeKI	GCWGC	2 cut(s)	152, 389
AseI	ATTAAT	1 cut(s)	537
Asp718I	GGTACC	1 cut(s)	410
AspS9I	GGNCC	3 cut(s)	459, 460, 778
AsuHPI	GGTGA	2 cut(s)	511, 679
AsuNHI	GCTAGC	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	778
BaeGI	GKGCMC	2 cut(s)	463, 484
BanI	GGYRCC	1 cut(s)	410
BanII	GRGCYC	1 cut(s)	463
BbvI	GCAGC	2 cut(s)	139, 401
BccI	CCATC	4 cut(s)	434, 539, 664, 946
BceAI	ACGGC	1 cut(s)	165
BciT130I	CCWGG	1 cut(s)	784
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	4 cut(s)	9, 85, 319, 601
BfaI	CTAG	6 cut(s)	11, 312, 393, 486, 648, 728
BglI	GCCNNNNNGGC	1 cut(s)	458
BisI	GCNGC	3 cut(s)	153, 390, 660
BlsI	GCNGC	3 cut(s)	154, 391, 661
Bme1390I	CCNGG	1 cut(s)	784
Bme18I	GGWCC	1 cut(s)	778
BmgT120I	GGNCC	3 cut(s)	459, 460, 778
BmiI	GGNNCC	4 cut(s)	412, 460, 461, 780
BmrFI	CCNGG	1 cut(s)	784
BmsI	GCATC	3 cut(s)	517, 871, 919
BmtI	GCTAGC	1 cut(s)	14
Bsa29I	ATCGAT	1 cut(s)	105
BsaAI	YACGTR	1 cut(s)	721
BsaI	GGTCTC	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	782
BsaXI	ACNNNNNCTCC	2 cut(s)	892, 922
Bsc4I	CCNNNNNNNGG	2 cut(s)	521, 990
Bse3DI	GCAATG	2 cut(s)	463, 654
BseBI	CCWGG	1 cut(s)	784
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	782
BseGI	GGATG	3 cut(s)	426, 508, 934
BseLI	CCNNNNNNNGG	2 cut(s)	521, 990
BseMI	GCAATG	2 cut(s)	463, 654
BseSI	GKGCMC	2 cut(s)	463, 484
BseXI	GCAGC	2 cut(s)	139, 401
BshFI	GGCC	1 cut(s)	461
BshNI	GGYRCC	1 cut(s)	410
BshVI	ATCGAT	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	764
BslI	CCNNNNNNNGG	2 cut(s)	521, 990
BsmAI	GTCTC	4 cut(s)	9, 85, 319, 601
BsmBI	CGTCTC	1 cut(s)	601
BsmFI	GGGAC	1 cut(s)	764
BsmI	GAATGC	1 cut(s)	313
BsnI	GGCC	1 cut(s)	461
Bso31I	GGTCTC	1 cut(s)	85
Bsp120I	GGGCCC	1 cut(s)	459
Bsp1286I	GDGCHC	2 cut(s)	463, 484
Bsp143I	GATC	3 cut(s)	91, 121, 598
BspACI	CCGC	1 cut(s)	659
BspANI	GGCC	1 cut(s)	461
BspDI	ATCGAT	1 cut(s)	105
BspLI	GGNNCC	4 cut(s)	412, 460, 461, 780
BspOI	GCTAGC	1 cut(s)	14
BspPI	GGATC	1 cut(s)	606
BspT107I	GGYRCC	1 cut(s)	410
BspTNI	GGTCTC	1 cut(s)	85
BsrDI	GCAATG	2 cut(s)	463, 654
BssECI	CCNNGG	1 cut(s)	782
BssMI	GATC	3 cut(s)	91, 121, 598
Bst2UI	CCWGG	1 cut(s)	784
Bst6I	CTCTTC	1 cut(s)	745
BstBAI	YACGTR	1 cut(s)	721
BstC8I	GCNNGC	3 cut(s)	12, 696, 803
BstF5I	GGATG	3 cut(s)	426, 508, 934
BstKTI	GATC	3 cut(s)	94, 124, 601
BstMAI	GTCTC	4 cut(s)	9, 85, 319, 601
BstMBI	GATC	3 cut(s)	91, 121, 598
BstMWI	GCNNNNNNNGC	2 cut(s)	458, 724
BstNI	CCWGG	1 cut(s)	784
BstSCI	CCNGG	1 cut(s)	782
BstSLI	GKGCMC	2 cut(s)	463, 484
BstV1I	GCAGC	2 cut(s)	139, 401
Bsu15I	ATCGAT	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	461
BsuTUI	ATCGAT	1 cut(s)	105
BtsCI	GGATG	3 cut(s)	426, 508, 934
Cac8I	GCNNGC	3 cut(s)	12, 696, 803
Cfr13I	GGNCC	3 cut(s)	459, 460, 778
ClaI	ATCGAT	1 cut(s)	105
CseI	GACGC	1 cut(s)	464
Csp6I	GTAC	3 cut(s)	354, 411, 900
CviAII	CATG	4 cut(s)	329, 415, 560, 699
CviQI	GTAC	3 cut(s)	354, 411, 900
DpnI	GATC	3 cut(s)	93, 123, 600
DpnII	GATC	3 cut(s)	91, 121, 598
DraI	TTTAAA	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	745
EarI	CTCTTC	1 cut(s)	745
Eco24I	GRGCYC	1 cut(s)	463
Eco31I	GGTCTC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	778
EcoO109I	RGGNCCY	1 cut(s)	459
EcoRII	CCWGG	1 cut(s)	782
EcoT22I	ATGCAT	1 cut(s)	420
EcoT38I	GRGCYC	1 cut(s)	463
Esp3I	CGTCTC	1 cut(s)	601
FaeI	CATG	4 cut(s)	332, 418, 563, 702
FaqI	GGGAC	1 cut(s)	764
FatI	CATG	4 cut(s)	328, 414, 559, 698
FauNDI	CATATG	1 cut(s)	603
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	3 cut(s)	153, 390, 660
FokI	GGATG	3 cut(s)	413, 495, 941
FriOI	GRGCYC	1 cut(s)	463
Fsp4HI	GCNGC	3 cut(s)	153, 390, 660
FspBI	CTAG	6 cut(s)	11, 312, 393, 486, 648, 728
GluI	GCNGC	3 cut(s)	153, 390, 660
HaeIII	GGCC	1 cut(s)	461
HgaI	GACGC	1 cut(s)	464
Hin1II	CATG	4 cut(s)	332, 418, 563, 702
HinfI	GANTC	5 cut(s)	107, 113, 163, 643, 737
HphI	GGTGA	2 cut(s)	511, 679
Hpy166II	GTNNAC	3 cut(s)	221, 251, 736
Hpy188I	TCNGA	4 cut(s)	46, 112, 544, 963
Hpy188III	TCNNGA	5 cut(s)	119, 707, 752, 820, 860
Hpy8I	GTNNAC	3 cut(s)	221, 251, 736
Hpy99I	CGWCG	1 cut(s)	480
HpyAV	CCTTC	4 cut(s)	13, 57, 331, 857
HpyCH4IV	ACGT	2 cut(s)	610, 720
HpyCH4V	TGCA	3 cut(s)	155, 418, 468
HpyF10VI	GCNNNNNNNGC	2 cut(s)	458, 724
HpySE526I	ACGT	2 cut(s)	610, 720
Hsp92II	CATG	4 cut(s)	332, 418, 563, 702
KpnI	GGTACC	1 cut(s)	414
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	91, 121, 598
LmnI	GCTCC	4 cut(s)	548, 620, 913, 937
LpnPI	CCDG	6 cut(s)	393, 680, 737, 769, 787, 796
Lsp1109I	GCAGC	2 cut(s)	139, 401
LweI	GCATC	3 cut(s)	517, 871, 919
MaeI	CTAG	6 cut(s)	11, 312, 393, 486, 648, 728
MaeII	ACGT	2 cut(s)	610, 720
MaeIII	GTNAC	2 cut(s)	965, 993
MalI	GATC	3 cut(s)	93, 123, 600
MboI	GATC	3 cut(s)	91, 121, 598
MboII	GAAGA	2 cut(s)	255, 732
MfeI	CAATTG	2 cut(s)	687, 808
MhlI	GDGCHC	2 cut(s)	463, 484
MlyI	GAGTC	2 cut(s)	172, 731
MmeI	TCCRAC	1 cut(s)	553
MnlI	CCTC	8 cut(s)	208, 210, 214, 325, 490, 559, 569, 658
Mph1103I	ATGCAT	1 cut(s)	420
MseI	TTAA	7 cut(s)	26, 135, 258, 531, 537, 681, 762
MspR9I	CCNGG	1 cut(s)	784
MunI	CAATTG	2 cut(s)	687, 808
Mva1269I	GAATGC	1 cut(s)	313
MvaI	CCWGG	1 cut(s)	784
MwoI	GCNNNNNNNGC	2 cut(s)	458, 724
NdeI	CATATG	1 cut(s)	603
NdeII	GATC	3 cut(s)	91, 121, 598
NheI	GCTAGC	1 cut(s)	10
NlaIII	CATG	4 cut(s)	332, 418, 563, 702
NlaIV	GGNNCC	4 cut(s)	412, 460, 461, 780
NmuCI	GTSAC	1 cut(s)	965
NsiI	ATGCAT	1 cut(s)	420
PctI	GAATGC	1 cut(s)	313
PfeI	GAWTC	3 cut(s)	107, 113, 643
PflMI	CCANNNNNTGG	1 cut(s)	521
PkrI	GCNGC	3 cut(s)	154, 391, 661
PleI	GAGTC	2 cut(s)	171, 731
PpsI	GAGTC	2 cut(s)	171, 731
Ppu21I	YACGTR	1 cut(s)	721
PshBI	ATTAAT	1 cut(s)	537
Psp6I	CCWGG	1 cut(s)	782
PspGI	CCWGG	1 cut(s)	782
PspN4I	GGNNCC	4 cut(s)	412, 460, 461, 780
PspOMI	GGGCCC	1 cut(s)	459
PspPI	GGNCC	3 cut(s)	459, 460, 778
RsaI	GTAC	3 cut(s)	355, 412, 901
RsaNI	GTAC	3 cut(s)	354, 411, 900
SaqAI	TTAA	7 cut(s)	26, 135, 258, 531, 537, 681, 762
SatI	GCNGC	3 cut(s)	153, 390, 660
Sau3AI	GATC	3 cut(s)	91, 121, 598
Sau96I	GGNCC	3 cut(s)	459, 460, 778
SchI	GAGTC	2 cut(s)	172, 731
ScrFI	CCNGG	1 cut(s)	784
SduI	GDGCHC	2 cut(s)	463, 484
SfaNI	GCATC	3 cut(s)	517, 871, 919
SinI	GGWCC	1 cut(s)	778
SsiI	CCGC	1 cut(s)	659
SspI	AATATT	2 cut(s)	291, 637
SspMI	CTAG	6 cut(s)	11, 312, 393, 486, 648, 728
StyD4I	CCNGG	1 cut(s)	782
TaiI	ACGT	2 cut(s)	613, 723
TaqI	TCGA	1 cut(s)	105
TauI	GCSGC	1 cut(s)	662
TfiI	GAWTC	3 cut(s)	107, 113, 643
Tru1I	TTAA	7 cut(s)	26, 135, 258, 531, 537, 681, 762
Tru9I	TTAA	7 cut(s)	26, 135, 258, 531, 537, 681, 762
TseFI	GTSAC	1 cut(s)	965
TseI	GCWGC	2 cut(s)	152, 389
Tsp45I	GTSAC	1 cut(s)	965
Van91I	CCANNNNNTGG	1 cut(s)	521
VpaK11BI	GGWCC	1 cut(s)	778
VspI	ATTAAT	1 cut(s)	537
XcmI	CCANNNNNNNNNTGG	1 cut(s)	522
XspI	CTAG	6 cut(s)	11, 312, 393, 486, 648, 728
Zsp2I	ATGCAT	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.