Rmu_sc0012471.1_g000010

NC domain-containing

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012471.1
Physical Location & Seq
Reverse (-)
57875 .. 60011
2137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012471.1_g000010.1.cds

Sequence Viewer

Length: 1596 bp
atgactctgaagcttacaaacaagatcgatagaaagagactcaggcctggagatcgtatttatgcttacagaaaagcggccatctacgcccaccatggtatcttcattgggggagatagagtgattcactttaacagaacacaagaaggaaacacatcgagacgaggaagcccctgcagaaactgtgggcttgtcaaaaatgacctccgaggagttgtcatgtcctgcattgactgtttccgcgacggccactccctccgccgcttccgatacggcgttagttggggtctttacgtcatcagccggccaggcacatgcaccaccggcgaggctccccgtgcagaagagaccatcagccgcgccattgaggagttaaacaagaaagattttggggactatcacgtgcttcagaacaactgcgagacctttgcggtgttctgcacgacggggaaccgcaggagcgacctggcgagcacggctatatcggcgatcaaggtggcgattcacaggctttatagtgatgtgaagagtaatcacggcaaggagaagctcaacgagttaaagcaggcgattgagaacctttttggtgatgtgaagaatcctcacggcgaggagaagctcaacaagttgaaccagatgattgatatctgggtcactaatagggcgtcgcctgaagagatcagtgacggattaaaaaatcttgaaaaggatcaagttgggcatgttgataaggccatggctcttcttgctcaaatggaagctcttggctttcgacccaattcggaaatgatatttgtggggtttaggccaagaattaagctttacaatgtgttgcttagagggtttttgaagaaaggtttgttaggacttgcaattagagttttgggggtaatgggtgatttgggtactgagagaaatcaagaaaattatgagattttacttgattactatgtcaatgctgggaggttggaggatacttggtcaatggttaatgagatgaagcggaagaggttttggctgggatcatttgtgtatggtaaggctattggtctttatagggacaatgggatgtggaagaaagcaatggacattgtggaagagataagagaaacggggatggtattagacaaacagatttacaacagcattattgatacatttgggaaatatggcgacttggatgaagcattggaagtgtttgggaaaatgaaacaagaacgtgtaaggcctgatatttcgacctttaattcgttgataaggtggcactgtaagtctgggttgttaaagaaggcccttgagttgtttaccaagatgcaagaacaaggattatatcctgatccgaaaatgtttgttactattatcagtagattgggggagcaagggaagtgggatatgatacagaagaccaatgagaatatgagaagccgagggcataaaaaaagtgggactatttatgctgctctggttgacatttatgggcaatatggaaaatttcgggacgcagaagagagtatatctgcactaaaggcagaaggtcttgttccctctgccagtatgtttttgtgtcttagcaaatgcctatgcccagcaggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

531

Amino Acids

60.4

Weight (kDa)

9.28

Isoelectric Point (pI)

35.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1580
AccII CGCG 2 cut(s) 243, 360
AciI CCGC 8 cut(s) 77, 241, 259, 262, 358, 431, 454, 1003
AclWI GGATC 3 cut(s) 717, 1030, 1331
AcoI YGGCCR 3 cut(s) 78, 247, 305
AcsI RAATTY 1 cut(s) 1490
AcuI CTGAAG 3 cut(s) 29, 392, 693
AcvI CACGTG 1 cut(s) 403
AcyI GRCGYC 1 cut(s) 665
AfaI GTAC 1 cut(s) 907
AflIII ACRYGT 1 cut(s) 1219
AgsI TTSAA 3 cut(s) 631, 704, 850
AjnI CCWGG 3 cut(s) 46, 307, 465
AluBI AGCT 5 cut(s) 13, 550, 619, 761, 820
AluI AGCT 5 cut(s) 13, 550, 619, 761, 820
Alw21I GWGCWC 1 cut(s) 476
Alw26I GTCTC 4 cut(s) 31, 154, 341, 416
AlwI GGATC 3 cut(s) 717, 1030, 1331
AlwNI CAGNNNCTG 1 cut(s) 183
AoxI GGCC 8 cut(s) 44, 78, 247, 305, 732, 806, 1226, 1290
ApeKI GCWGC 1 cut(s) 1457
ApoI RAATTY 1 cut(s) 1490
ArsI GACNNNNNNTTYG 2 cut(s) 1231, 1263
AspLEI GCGC 1 cut(s) 362
AspS9I GGNCC 1 cut(s) 1291
AsuHPI GGTGA 2 cut(s) 599, 908
BaeI ACNNNNGTAYC 2 cut(s) 82, 115
BbrPI CACGTG 1 cut(s) 403
BbsI GAAGAC 1 cut(s) 1409
Bbv12I GWGCWC 1 cut(s) 476
BbvI GCAGC 1 cut(s) 1444
BccI CCATC 3 cut(s) 89, 359, 1111
BceAI ACGGC 5 cut(s) 262, 289, 492, 553, 622
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BciT130I CCWGG 3 cut(s) 48, 309, 467
BciVI GTATCC 1 cut(s) 967
BcoDI GTCTC 4 cut(s) 31, 154, 341, 416
BfmI CTRYAG 1 cut(s) 175
BfuAI ACCTGC 1 cut(s) 1580
BfuI GTATCC 1 cut(s) 967
BglI GCCNNNNNGGC 1 cut(s) 309
BisI GCNGC 4 cut(s) 78, 262, 358, 1458
BlsI GCNGC 4 cut(s) 79, 263, 359, 1459
Bme1390I CCNGG 3 cut(s) 48, 309, 467
BmgT120I GGNCC 1 cut(s) 1291
BmiI GGNNCC 2 cut(s) 333, 452
BmrFI CCNGG 3 cut(s) 48, 309, 467
BmsI GCATC 1 cut(s) 1302
BpiI GAAGAC 1 cut(s) 1409
BpmI CTGGAG 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 1316
Bsa29I ATCGAT 1 cut(s) 27
BsaAI YACGTR 1 cut(s) 403
BsaBI GATNNNNATC 1 cut(s) 644
BsaHI GRCGYC 1 cut(s) 665
BsaI GGTCTC 2 cut(s) 341, 416
BsaJI CCNNGG 4 cut(s) 94, 208, 735, 1426
BsaXI ACNNNNNCTCC 4 cut(s) 105, 135, 236, 266
Bse118I RCCGGY 2 cut(s) 303, 323
Bse1I ACTGG 1 cut(s) 1551
Bse3DI GCAATG 1 cut(s) 1089
Bse8I GATNNNNATC 1 cut(s) 644
BseBI CCWGG 3 cut(s) 48, 309, 467
BseCI ATCGAT 1 cut(s) 27
BseDI CCNNGG 4 cut(s) 94, 208, 735, 1426
BseGI GGATG 3 cut(s) 1074, 1122, 1186
BseJI GATNNNNATC 1 cut(s) 644
BseMI GCAATG 1 cut(s) 1089
BseMII CTCAG 2 cut(s) 55, 900
BseNI ACTGG 1 cut(s) 1551
BseRI GAGGAG 3 cut(s) 225, 383, 626
BseXI GCAGC 1 cut(s) 1444
BseYI CCCAGC 3 cut(s) 959, 1018, 1585
BsgI GTGCAG 3 cut(s) 360, 424, 1503
Bsh1236I CGCG 2 cut(s) 243, 360
BshFI GGCC 8 cut(s) 46, 80, 249, 307, 734, 808, 1228, 1292
BshVI ATCGAT 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 476
BsiSI CCGG 2 cut(s) 304, 324
BslFI GGGAC 4 cut(s) 407, 1073, 1459, 1511
BsmAI GTCTC 4 cut(s) 31, 154, 341, 416
BsmBI CGTCTC 1 cut(s) 154
BsmFI GGGAC 4 cut(s) 407, 1073, 1459, 1511
BsnI GGCC 8 cut(s) 46, 80, 249, 307, 734, 808, 1228, 1292
Bso31I GGTCTC 2 cut(s) 341, 416
Bsp1286I GDGCHC 1 cut(s) 476
Bsp143I GATC 7 cut(s) 24, 52, 489, 678, 709, 1022, 1336
Bsp19I CCATGG 2 cut(s) 94, 735
BspACI CCGC 8 cut(s) 77, 241, 259, 262, 358, 431, 454, 1003
BspANI GGCC 8 cut(s) 46, 80, 249, 307, 734, 808, 1228, 1292
BspCNI CTCAG 2 cut(s) 54, 901
BspDI ATCGAT 1 cut(s) 27
BspFNI CGCG 2 cut(s) 243, 360
BspLI GGNNCC 2 cut(s) 333, 452
BspMAI CTGCAG 1 cut(s) 179
BspMI ACCTGC 1 cut(s) 1580
BspPI GGATC 3 cut(s) 717, 1030, 1331
BspQI GCTCTTC 1 cut(s) 747
BspTNI GGTCTC 2 cut(s) 341, 416
BsrDI GCAATG 1 cut(s) 1089
BsrFI RCCGGY 2 cut(s) 303, 323
BsrI ACTGG 1 cut(s) 1551
BssAI RCCGGY 2 cut(s) 303, 323
BssECI CCNNGG 4 cut(s) 94, 208, 735, 1426
BssMI GATC 7 cut(s) 24, 52, 489, 678, 709, 1022, 1336
BssNI GRCGYC 1 cut(s) 665
BssT1I CCWWGG 2 cut(s) 94, 735
Bst2UI CCWGG 3 cut(s) 48, 309, 467
Bst4CI ACNGT 3 cut(s) 185, 236, 1268
Bst6I CTCTTC 7 cut(s) 339, 521, 669, 747, 1001, 1092, 1500
BstACI GRCGYC 1 cut(s) 665
BstBAI YACGTR 1 cut(s) 403
BstC8I GCNNGC 3 cut(s) 305, 472, 567
BstDEI CTNAG 4 cut(s) 41, 836, 909, 1568
BstDSI CCRYGG 2 cut(s) 94, 735
BstF5I GGATG 3 cut(s) 1074, 1122, 1186
BstFNI CGCG 2 cut(s) 243, 360
BstHHI GCGC 1 cut(s) 362
BstKTI GATC 7 cut(s) 27, 55, 492, 681, 712, 1025, 1339
BstMAI GTCTC 4 cut(s) 31, 154, 341, 416
BstMBI GATC 7 cut(s) 24, 52, 489, 678, 709, 1022, 1336
BstMWI GCNNNNNNNGC 8 cut(s) 86, 309, 324, 338, 476, 485, 746, 1526
BstNI CCWGG 3 cut(s) 48, 309, 467
BstNSI RCATGY 2 cut(s) 318, 725
BstSCI CCNGG 3 cut(s) 46, 307, 465
BstSFI CTRYAG 1 cut(s) 175
BstUI CGCG 2 cut(s) 243, 360
BstV1I GCAGC 1 cut(s) 1444
BstV2I GAAGAC 1 cut(s) 1409
Bsu15I ATCGAT 1 cut(s) 27
BsuI GTATCC 1 cut(s) 967
BsuRI GGCC 8 cut(s) 46, 80, 249, 307, 734, 808, 1228, 1292
BsuTUI ATCGAT 1 cut(s) 27
BtgI CCRYGG 2 cut(s) 94, 735
BtsCI GGATG 3 cut(s) 1074, 1122, 1186
BtsIMutI CAGTG 2 cut(s) 688, 1264
BveI ACCTGC 1 cut(s) 1580
Cac8I GCNNGC 3 cut(s) 305, 472, 567
CaiI CAGNNNCTG 1 cut(s) 183
CfoI GCGC 1 cut(s) 362
Cfr10I RCCGGY 2 cut(s) 303, 323
Cfr13I GGNCC 1 cut(s) 1291
ClaI ATCGAT 1 cut(s) 27
CseI GACGC 2 cut(s) 654, 1508
Csp6I GTAC 1 cut(s) 906
CspCI CAANNNNNGTGG 2 cut(s) 1367, 1402
CviAII CATG 5 cut(s) 95, 220, 315, 722, 736
CviQI GTAC 1 cut(s) 906
DdeI CTNAG 4 cut(s) 41, 836, 909, 1568
DpnI GATC 7 cut(s) 26, 54, 491, 680, 711, 1024, 1338
DpnII GATC 7 cut(s) 24, 52, 489, 678, 709, 1022, 1336
EaeI YGGCCR 3 cut(s) 78, 247, 305
Eam1104I CTCTTC 7 cut(s) 339, 521, 669, 747, 1001, 1092, 1500
EarI CTCTTC 7 cut(s) 339, 521, 669, 747, 1001, 1092, 1500
EciI GGCGGA 1 cut(s) 248
Eco130I CCWWGG 2 cut(s) 94, 735
Eco147I AGGCCT 2 cut(s) 46, 1228
Eco31I GGTCTC 2 cut(s) 341, 416
Eco32I GATATC 1 cut(s) 646
Eco57I CTGAAG 3 cut(s) 29, 392, 693
Eco72I CACGTG 1 cut(s) 403
EcoO109I RGGNCCY 1 cut(s) 1291
EcoRII CCWGG 3 cut(s) 46, 307, 465
EcoRV GATATC 1 cut(s) 646
EcoT14I CCWWGG 2 cut(s) 94, 735
ErhI CCWWGG 2 cut(s) 94, 735
Esp3I CGTCTC 1 cut(s) 154
FaeI CATG 5 cut(s) 98, 223, 318, 725, 739
FaqI GGGAC 4 cut(s) 407, 1073, 1459, 1511
FatI CATG 5 cut(s) 94, 219, 314, 721, 735
Fnu4HI GCNGC 4 cut(s) 78, 262, 358, 1458
FokI GGATG 3 cut(s) 1081, 1129, 1193
Fsp4HI GCNGC 4 cut(s) 78, 262, 358, 1458
GlaI GCGC 1 cut(s) 361
GluI GCNGC 4 cut(s) 78, 262, 358, 1458
GsaI CCCAGC 3 cut(s) 963, 1022, 1589
GsuI CTGGAG 1 cut(s) 69
HaeIII GGCC 8 cut(s) 46, 80, 249, 307, 734, 808, 1228, 1292
HapII CCGG 2 cut(s) 304, 324
HgaI GACGC 2 cut(s) 654, 1508
HhaI GCGC 1 cut(s) 362
Hin1I GRCGYC 1 cut(s) 665
Hin1II CATG 5 cut(s) 98, 223, 318, 725, 739
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HincII GTYRAC 1 cut(s) 1468
HindII GTYRAC 1 cut(s) 1468
HindIII AAGCTT 2 cut(s) 11, 818
HinfI GANTC 5 cut(s) 4, 39, 124, 502, 598
HpaII CCGG 2 cut(s) 304, 324
HphI GGTGA 2 cut(s) 599, 908
Hpy166II GTNNAC 2 cut(s) 1305, 1468
Hpy188I TCNGA 6 cut(s) 9, 209, 269, 411, 784, 1341
Hpy188III TCNNGA 5 cut(s) 159, 701, 920, 1334, 1496
Hpy8I GTNNAC 2 cut(s) 1305, 1468
Hpy99I CGWCG 3 cut(s) 248, 448, 670
HpyAV CCTTC 3 cut(s) 140, 1282, 1526
HpyCH4III ACNGT 3 cut(s) 185, 236, 1268
HpyCH4IV ACGT 3 cut(s) 294, 402, 1219
HpyCH4V TGCA 8 cut(s) 177, 228, 318, 341, 441, 872, 1315, 1520
HpyF10VI GCNNNNNNNGC 8 cut(s) 86, 309, 324, 338, 476, 485, 746, 1526
HpyF3I CTNAG 4 cut(s) 41, 836, 909, 1568
HpySE526I ACGT 3 cut(s) 294, 402, 1219
Hsp92I GRCGYC 1 cut(s) 665
Hsp92II CATG 5 cut(s) 98, 223, 318, 725, 739
HspAI GCGC 1 cut(s) 360
KroI GCCGGC 1 cut(s) 303
KroNI GCCGGC 1 cut(s) 305
Kzo9I GATC 7 cut(s) 24, 52, 489, 678, 709, 1022, 1336
LguI GCTCTTC 1 cut(s) 747
LmnI GCTCC 3 cut(s) 337, 459, 1375
Lsp1109I GCAGC 1 cut(s) 1444
LweI GCATC 1 cut(s) 1302
MaeII ACGT 3 cut(s) 294, 402, 1219
MaeIII GTNAC 3 cut(s) 652, 683, 1351
MalI GATC 7 cut(s) 26, 54, 491, 680, 711, 1024, 1338
MboI GATC 7 cut(s) 24, 52, 489, 678, 709, 1022, 1336
MhlI GDGCHC 1 cut(s) 476
MluCI AATT 6 cut(s) 778, 813, 873, 925, 1246, 1490
MlyI GAGTC 1 cut(s) 33
MmeI TCCRAC 1 cut(s) 948
MroNI GCCGGC 1 cut(s) 303
MseI TTAA 9 cut(s) 132, 374, 560, 692, 816, 990, 1245, 1283, 1594
MspI CCGG 2 cut(s) 304, 324
MspR9I CCNGG 3 cut(s) 48, 309, 467
MvaI CCWGG 3 cut(s) 48, 309, 467
MvnI CGCG 2 cut(s) 243, 360
MwoI GCNNNNNNNGC 8 cut(s) 86, 309, 324, 338, 476, 485, 746, 1526
NaeI GCCGGC 1 cut(s) 305
NcoI CCATGG 2 cut(s) 94, 735
NdeII GATC 7 cut(s) 24, 52, 489, 678, 709, 1022, 1336
NgoMIV GCCGGC 1 cut(s) 303
NlaIII CATG 5 cut(s) 98, 223, 318, 725, 739
NlaIV GGNNCC 2 cut(s) 333, 452
NmeAIII GCCGAG 1 cut(s) 1451
NmuCI GTSAC 2 cut(s) 652, 683
NspI RCATGY 2 cut(s) 318, 725
PceI AGGCCT 2 cut(s) 46, 1228
PciSI GCTCTTC 1 cut(s) 747
PdiI GCCGGC 1 cut(s) 305
PfeI GAWTC 3 cut(s) 124, 502, 598
PkrI GCNGC 4 cut(s) 79, 263, 359, 1459
PleI GAGTC 1 cut(s) 33
PmaCI CACGTG 1 cut(s) 403
PmlI CACGTG 1 cut(s) 403
PpsI GAGTC 1 cut(s) 33
Ppu21I YACGTR 1 cut(s) 403
Psp6I CCWGG 3 cut(s) 46, 307, 465
PspCI CACGTG 1 cut(s) 403
PspFI CCCAGC 3 cut(s) 959, 1018, 1585
PspGI CCWGG 3 cut(s) 46, 307, 465
PspN4I GGNNCC 2 cut(s) 333, 452
PspPI GGNCC 1 cut(s) 1291
PstI CTGCAG 1 cut(s) 179
PstNI CAGNNNCTG 1 cut(s) 183
RsaI GTAC 1 cut(s) 907
RsaNI GTAC 1 cut(s) 906
SapI GCTCTTC 1 cut(s) 747
SaqAI TTAA 9 cut(s) 132, 374, 560, 692, 816, 990, 1245, 1283, 1594
SatI GCNGC 4 cut(s) 78, 262, 358, 1458
Sau3AI GATC 7 cut(s) 24, 52, 489, 678, 709, 1022, 1336
Sau96I GGNCC 1 cut(s) 1291
SchI GAGTC 1 cut(s) 33
ScrFI CCNGG 3 cut(s) 48, 309, 467
SduI GDGCHC 1 cut(s) 476
SfaNI GCATC 1 cut(s) 1302
SfcI CTRYAG 1 cut(s) 175
SgrAI CRCCGGYG 1 cut(s) 323
SmlI CTYRAG 1 cut(s) 1295
SmoI CTYRAG 1 cut(s) 1295
Sse9I AATT 6 cut(s) 778, 813, 873, 925, 1246, 1490
SseBI AGGCCT 2 cut(s) 46, 1228
SsiI CCGC 8 cut(s) 77, 241, 259, 262, 358, 431, 454, 1003
StuI AGGCCT 2 cut(s) 46, 1228
StyD4I CCNGG 3 cut(s) 46, 307, 465
StyI CCWWGG 2 cut(s) 94, 735
TaaI ACNGT 3 cut(s) 185, 236, 1268
TaiI ACGT 3 cut(s) 297, 405, 1222
TaqI TCGA 4 cut(s) 27, 158, 772, 1238
TasI AATT 6 cut(s) 778, 813, 873, 925, 1246, 1490
TauI GCSGC 3 cut(s) 80, 264, 360
TfiI GAWTC 3 cut(s) 124, 502, 598
Tru1I TTAA 9 cut(s) 132, 374, 560, 692, 816, 990, 1245, 1283, 1594
Tru9I TTAA 9 cut(s) 132, 374, 560, 692, 816, 990, 1245, 1283, 1594
TscAI CASTG 2 cut(s) 688, 1271
TseFI GTSAC 2 cut(s) 652, 683
TseI GCWGC 1 cut(s) 1457
Tsp45I GTSAC 2 cut(s) 652, 683
TspDTI ATGAA 4 cut(s) 94, 1013, 1197, 1223
TspGWI ACGGA 1 cut(s) 702
TspRI CASTG 2 cut(s) 688, 1271
XapI RAATTY 1 cut(s) 1490
XceI RCATGY 2 cut(s) 318, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.