NC domain-containing
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G42560 AT5G36300 AT5G36300 |
| fragaria_vesca | FvH4_7g33490 FvH4_7g33490 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 FvH4_7g33530 |
| malus_domestica | MD01G1232900.v1.1 |
| prunus_persica | Prupe.2G323300_v2.0.a1 |
| pyrus_communis | pycom01g24130 pycom07g27830 |
| rosa_chinensis | RchiOBHm_Chr1g0383591 RchiOBHm_Chr1g0383651 |
| rosa_laevigata | RLG00000026099 |
| rosa_multiflora | Rmu_sc0012471.1_g000010 Rmu_sc0012471.1_g000013 |
| rosa_roxburghii | Rroxscaffold_2G00116820 Rroxscaffold_2G00117690 Rroxscaffold_3G00229630 Rroxscaffold_4G00277240 Rroxscaffold_4G00302110 Rroxscaffold_5G00350700 Rroxscaffold_5G00350710 Rroxscaffold_7G00181950 |
| rosa_rugosa | Rorug01G0442100 Rorug01G0442200 |
| rosa_samantha | Rh1AG467600 Rh1AG467800 Rh1BG425300 Rh1CG437900 Rh1CG438100 Rh1DG458100 |
| rosa_wichuraiana | Rw1G040460 Rw1G040480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1580 |
| AccII | CGCG | 2 cut(s) | 243, 360 |
| AciI | CCGC | 8 cut(s) | 77, 241, 259, 262, 358, 431, 454, 1003 |
| AclWI | GGATC | 3 cut(s) | 717, 1030, 1331 |
| AcoI | YGGCCR | 3 cut(s) | 78, 247, 305 |
| AcsI | RAATTY | 1 cut(s) | 1490 |
| AcuI | CTGAAG | 3 cut(s) | 29, 392, 693 |
| AcvI | CACGTG | 1 cut(s) | 403 |
| AcyI | GRCGYC | 1 cut(s) | 665 |
| AfaI | GTAC | 1 cut(s) | 907 |
| AflIII | ACRYGT | 1 cut(s) | 1219 |
| AgsI | TTSAA | 3 cut(s) | 631, 704, 850 |
| AjnI | CCWGG | 3 cut(s) | 46, 307, 465 |
| AluBI | AGCT | 5 cut(s) | 13, 550, 619, 761, 820 |
| AluI | AGCT | 5 cut(s) | 13, 550, 619, 761, 820 |
| Alw21I | GWGCWC | 1 cut(s) | 476 |
| Alw26I | GTCTC | 4 cut(s) | 31, 154, 341, 416 |
| AlwI | GGATC | 3 cut(s) | 717, 1030, 1331 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 183 |
| AoxI | GGCC | 8 cut(s) | 44, 78, 247, 305, 732, 806, 1226, 1290 |
| ApeKI | GCWGC | 1 cut(s) | 1457 |
| ApoI | RAATTY | 1 cut(s) | 1490 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1231, 1263 |
| AspLEI | GCGC | 1 cut(s) | 362 |
| AspS9I | GGNCC | 1 cut(s) | 1291 |
| AsuHPI | GGTGA | 2 cut(s) | 599, 908 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 82, 115 |
| BbrPI | CACGTG | 1 cut(s) | 403 |
| BbsI | GAAGAC | 1 cut(s) | 1409 |
| Bbv12I | GWGCWC | 1 cut(s) | 476 |
| BbvI | GCAGC | 1 cut(s) | 1444 |
| BccI | CCATC | 3 cut(s) | 89, 359, 1111 |
| BceAI | ACGGC | 5 cut(s) | 262, 289, 492, 553, 622 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 410, 444 |
| BciT130I | CCWGG | 3 cut(s) | 48, 309, 467 |
| BciVI | GTATCC | 1 cut(s) | 967 |
| BcoDI | GTCTC | 4 cut(s) | 31, 154, 341, 416 |
| BfmI | CTRYAG | 1 cut(s) | 175 |
| BfuAI | ACCTGC | 1 cut(s) | 1580 |
| BfuI | GTATCC | 1 cut(s) | 967 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 309 |
| BisI | GCNGC | 4 cut(s) | 78, 262, 358, 1458 |
| BlsI | GCNGC | 4 cut(s) | 79, 263, 359, 1459 |
| Bme1390I | CCNGG | 3 cut(s) | 48, 309, 467 |
| BmgT120I | GGNCC | 1 cut(s) | 1291 |
| BmiI | GGNNCC | 2 cut(s) | 333, 452 |
| BmrFI | CCNGG | 3 cut(s) | 48, 309, 467 |
| BmsI | GCATC | 1 cut(s) | 1302 |
| BpiI | GAAGAC | 1 cut(s) | 1409 |
| BpmI | CTGGAG | 1 cut(s) | 69 |
| BpuEI | CTTGAG | 1 cut(s) | 1316 |
| Bsa29I | ATCGAT | 1 cut(s) | 27 |
| BsaAI | YACGTR | 1 cut(s) | 403 |
| BsaBI | GATNNNNATC | 1 cut(s) | 644 |
| BsaHI | GRCGYC | 1 cut(s) | 665 |
| BsaI | GGTCTC | 2 cut(s) | 341, 416 |
| BsaJI | CCNNGG | 4 cut(s) | 94, 208, 735, 1426 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 105, 135, 236, 266 |
| Bse118I | RCCGGY | 2 cut(s) | 303, 323 |
| Bse1I | ACTGG | 1 cut(s) | 1551 |
| Bse3DI | GCAATG | 1 cut(s) | 1089 |
| Bse8I | GATNNNNATC | 1 cut(s) | 644 |
| BseBI | CCWGG | 3 cut(s) | 48, 309, 467 |
| BseCI | ATCGAT | 1 cut(s) | 27 |
| BseDI | CCNNGG | 4 cut(s) | 94, 208, 735, 1426 |
| BseGI | GGATG | 3 cut(s) | 1074, 1122, 1186 |
| BseJI | GATNNNNATC | 1 cut(s) | 644 |
| BseMI | GCAATG | 1 cut(s) | 1089 |
| BseMII | CTCAG | 2 cut(s) | 55, 900 |
| BseNI | ACTGG | 1 cut(s) | 1551 |
| BseRI | GAGGAG | 3 cut(s) | 225, 383, 626 |
| BseXI | GCAGC | 1 cut(s) | 1444 |
| BseYI | CCCAGC | 3 cut(s) | 959, 1018, 1585 |
| BsgI | GTGCAG | 3 cut(s) | 360, 424, 1503 |
| Bsh1236I | CGCG | 2 cut(s) | 243, 360 |
| BshFI | GGCC | 8 cut(s) | 46, 80, 249, 307, 734, 808, 1228, 1292 |
| BshVI | ATCGAT | 1 cut(s) | 27 |
| BsiHKAI | GWGCWC | 1 cut(s) | 476 |
| BsiSI | CCGG | 2 cut(s) | 304, 324 |
| BslFI | GGGAC | 4 cut(s) | 407, 1073, 1459, 1511 |
| BsmAI | GTCTC | 4 cut(s) | 31, 154, 341, 416 |
| BsmBI | CGTCTC | 1 cut(s) | 154 |
| BsmFI | GGGAC | 4 cut(s) | 407, 1073, 1459, 1511 |
| BsnI | GGCC | 8 cut(s) | 46, 80, 249, 307, 734, 808, 1228, 1292 |
| Bso31I | GGTCTC | 2 cut(s) | 341, 416 |
| Bsp1286I | GDGCHC | 1 cut(s) | 476 |
| Bsp143I | GATC | 7 cut(s) | 24, 52, 489, 678, 709, 1022, 1336 |
| Bsp19I | CCATGG | 2 cut(s) | 94, 735 |
| BspACI | CCGC | 8 cut(s) | 77, 241, 259, 262, 358, 431, 454, 1003 |
| BspANI | GGCC | 8 cut(s) | 46, 80, 249, 307, 734, 808, 1228, 1292 |
| BspCNI | CTCAG | 2 cut(s) | 54, 901 |
| BspDI | ATCGAT | 1 cut(s) | 27 |
| BspFNI | CGCG | 2 cut(s) | 243, 360 |
| BspLI | GGNNCC | 2 cut(s) | 333, 452 |
| BspMAI | CTGCAG | 1 cut(s) | 179 |
| BspMI | ACCTGC | 1 cut(s) | 1580 |
| BspPI | GGATC | 3 cut(s) | 717, 1030, 1331 |
| BspQI | GCTCTTC | 1 cut(s) | 747 |
| BspTNI | GGTCTC | 2 cut(s) | 341, 416 |
| BsrDI | GCAATG | 1 cut(s) | 1089 |
| BsrFI | RCCGGY | 2 cut(s) | 303, 323 |
| BsrI | ACTGG | 1 cut(s) | 1551 |
| BssAI | RCCGGY | 2 cut(s) | 303, 323 |
| BssECI | CCNNGG | 4 cut(s) | 94, 208, 735, 1426 |
| BssMI | GATC | 7 cut(s) | 24, 52, 489, 678, 709, 1022, 1336 |
| BssNI | GRCGYC | 1 cut(s) | 665 |
| BssT1I | CCWWGG | 2 cut(s) | 94, 735 |
| Bst2UI | CCWGG | 3 cut(s) | 48, 309, 467 |
| Bst4CI | ACNGT | 3 cut(s) | 185, 236, 1268 |
| Bst6I | CTCTTC | 7 cut(s) | 339, 521, 669, 747, 1001, 1092, 1500 |
| BstACI | GRCGYC | 1 cut(s) | 665 |
| BstBAI | YACGTR | 1 cut(s) | 403 |
| BstC8I | GCNNGC | 3 cut(s) | 305, 472, 567 |
| BstDEI | CTNAG | 4 cut(s) | 41, 836, 909, 1568 |
| BstDSI | CCRYGG | 2 cut(s) | 94, 735 |
| BstF5I | GGATG | 3 cut(s) | 1074, 1122, 1186 |
| BstFNI | CGCG | 2 cut(s) | 243, 360 |
| BstHHI | GCGC | 1 cut(s) | 362 |
| BstKTI | GATC | 7 cut(s) | 27, 55, 492, 681, 712, 1025, 1339 |
| BstMAI | GTCTC | 4 cut(s) | 31, 154, 341, 416 |
| BstMBI | GATC | 7 cut(s) | 24, 52, 489, 678, 709, 1022, 1336 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 86, 309, 324, 338, 476, 485, 746, 1526 |
| BstNI | CCWGG | 3 cut(s) | 48, 309, 467 |
| BstNSI | RCATGY | 2 cut(s) | 318, 725 |
| BstSCI | CCNGG | 3 cut(s) | 46, 307, 465 |
| BstSFI | CTRYAG | 1 cut(s) | 175 |
| BstUI | CGCG | 2 cut(s) | 243, 360 |
| BstV1I | GCAGC | 1 cut(s) | 1444 |
| BstV2I | GAAGAC | 1 cut(s) | 1409 |
| Bsu15I | ATCGAT | 1 cut(s) | 27 |
| BsuI | GTATCC | 1 cut(s) | 967 |
| BsuRI | GGCC | 8 cut(s) | 46, 80, 249, 307, 734, 808, 1228, 1292 |
| BsuTUI | ATCGAT | 1 cut(s) | 27 |
| BtgI | CCRYGG | 2 cut(s) | 94, 735 |
| BtsCI | GGATG | 3 cut(s) | 1074, 1122, 1186 |
| BtsIMutI | CAGTG | 2 cut(s) | 688, 1264 |
| BveI | ACCTGC | 1 cut(s) | 1580 |
| Cac8I | GCNNGC | 3 cut(s) | 305, 472, 567 |
| CaiI | CAGNNNCTG | 1 cut(s) | 183 |
| CfoI | GCGC | 1 cut(s) | 362 |
| Cfr10I | RCCGGY | 2 cut(s) | 303, 323 |
| Cfr13I | GGNCC | 1 cut(s) | 1291 |
| ClaI | ATCGAT | 1 cut(s) | 27 |
| CseI | GACGC | 2 cut(s) | 654, 1508 |
| Csp6I | GTAC | 1 cut(s) | 906 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1367, 1402 |
| CviAII | CATG | 5 cut(s) | 95, 220, 315, 722, 736 |
| CviQI | GTAC | 1 cut(s) | 906 |
| DdeI | CTNAG | 4 cut(s) | 41, 836, 909, 1568 |
| DpnI | GATC | 7 cut(s) | 26, 54, 491, 680, 711, 1024, 1338 |
| DpnII | GATC | 7 cut(s) | 24, 52, 489, 678, 709, 1022, 1336 |
| EaeI | YGGCCR | 3 cut(s) | 78, 247, 305 |
| Eam1104I | CTCTTC | 7 cut(s) | 339, 521, 669, 747, 1001, 1092, 1500 |
| EarI | CTCTTC | 7 cut(s) | 339, 521, 669, 747, 1001, 1092, 1500 |
| EciI | GGCGGA | 1 cut(s) | 248 |
| Eco130I | CCWWGG | 2 cut(s) | 94, 735 |
| Eco147I | AGGCCT | 2 cut(s) | 46, 1228 |
| Eco31I | GGTCTC | 2 cut(s) | 341, 416 |
| Eco32I | GATATC | 1 cut(s) | 646 |
| Eco57I | CTGAAG | 3 cut(s) | 29, 392, 693 |
| Eco72I | CACGTG | 1 cut(s) | 403 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1291 |
| EcoRII | CCWGG | 3 cut(s) | 46, 307, 465 |
| EcoRV | GATATC | 1 cut(s) | 646 |
| EcoT14I | CCWWGG | 2 cut(s) | 94, 735 |
| ErhI | CCWWGG | 2 cut(s) | 94, 735 |
| Esp3I | CGTCTC | 1 cut(s) | 154 |
| FaeI | CATG | 5 cut(s) | 98, 223, 318, 725, 739 |
| FaqI | GGGAC | 4 cut(s) | 407, 1073, 1459, 1511 |
| FatI | CATG | 5 cut(s) | 94, 219, 314, 721, 735 |
| Fnu4HI | GCNGC | 4 cut(s) | 78, 262, 358, 1458 |
| FokI | GGATG | 3 cut(s) | 1081, 1129, 1193 |
| Fsp4HI | GCNGC | 4 cut(s) | 78, 262, 358, 1458 |
| GlaI | GCGC | 1 cut(s) | 361 |
| GluI | GCNGC | 4 cut(s) | 78, 262, 358, 1458 |
| GsaI | CCCAGC | 3 cut(s) | 963, 1022, 1589 |
| GsuI | CTGGAG | 1 cut(s) | 69 |
| HaeIII | GGCC | 8 cut(s) | 46, 80, 249, 307, 734, 808, 1228, 1292 |
| HapII | CCGG | 2 cut(s) | 304, 324 |
| HgaI | GACGC | 2 cut(s) | 654, 1508 |
| HhaI | GCGC | 1 cut(s) | 362 |
| Hin1I | GRCGYC | 1 cut(s) | 665 |
| Hin1II | CATG | 5 cut(s) | 98, 223, 318, 725, 739 |
| Hin6I | GCGC | 1 cut(s) | 360 |
| HinP1I | GCGC | 1 cut(s) | 360 |
| HincII | GTYRAC | 1 cut(s) | 1468 |
| HindII | GTYRAC | 1 cut(s) | 1468 |
| HindIII | AAGCTT | 2 cut(s) | 11, 818 |
| HinfI | GANTC | 5 cut(s) | 4, 39, 124, 502, 598 |
| HpaII | CCGG | 2 cut(s) | 304, 324 |
| HphI | GGTGA | 2 cut(s) | 599, 908 |
| Hpy166II | GTNNAC | 2 cut(s) | 1305, 1468 |
| Hpy188I | TCNGA | 6 cut(s) | 9, 209, 269, 411, 784, 1341 |
| Hpy188III | TCNNGA | 5 cut(s) | 159, 701, 920, 1334, 1496 |
| Hpy8I | GTNNAC | 2 cut(s) | 1305, 1468 |
| Hpy99I | CGWCG | 3 cut(s) | 248, 448, 670 |
| HpyAV | CCTTC | 3 cut(s) | 140, 1282, 1526 |
| HpyCH4III | ACNGT | 3 cut(s) | 185, 236, 1268 |
| HpyCH4IV | ACGT | 3 cut(s) | 294, 402, 1219 |
| HpyCH4V | TGCA | 8 cut(s) | 177, 228, 318, 341, 441, 872, 1315, 1520 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 86, 309, 324, 338, 476, 485, 746, 1526 |
| HpyF3I | CTNAG | 4 cut(s) | 41, 836, 909, 1568 |
| HpySE526I | ACGT | 3 cut(s) | 294, 402, 1219 |
| Hsp92I | GRCGYC | 1 cut(s) | 665 |
| Hsp92II | CATG | 5 cut(s) | 98, 223, 318, 725, 739 |
| HspAI | GCGC | 1 cut(s) | 360 |
| KroI | GCCGGC | 1 cut(s) | 303 |
| KroNI | GCCGGC | 1 cut(s) | 305 |
| Kzo9I | GATC | 7 cut(s) | 24, 52, 489, 678, 709, 1022, 1336 |
| LguI | GCTCTTC | 1 cut(s) | 747 |
| LmnI | GCTCC | 3 cut(s) | 337, 459, 1375 |
| Lsp1109I | GCAGC | 1 cut(s) | 1444 |
| LweI | GCATC | 1 cut(s) | 1302 |
| MaeII | ACGT | 3 cut(s) | 294, 402, 1219 |
| MaeIII | GTNAC | 3 cut(s) | 652, 683, 1351 |
| MalI | GATC | 7 cut(s) | 26, 54, 491, 680, 711, 1024, 1338 |
| MboI | GATC | 7 cut(s) | 24, 52, 489, 678, 709, 1022, 1336 |
| MhlI | GDGCHC | 1 cut(s) | 476 |
| MluCI | AATT | 6 cut(s) | 778, 813, 873, 925, 1246, 1490 |
| MlyI | GAGTC | 1 cut(s) | 33 |
| MmeI | TCCRAC | 1 cut(s) | 948 |
| MroNI | GCCGGC | 1 cut(s) | 303 |
| MseI | TTAA | 9 cut(s) | 132, 374, 560, 692, 816, 990, 1245, 1283, 1594 |
| MspI | CCGG | 2 cut(s) | 304, 324 |
| MspR9I | CCNGG | 3 cut(s) | 48, 309, 467 |
| MvaI | CCWGG | 3 cut(s) | 48, 309, 467 |
| MvnI | CGCG | 2 cut(s) | 243, 360 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 86, 309, 324, 338, 476, 485, 746, 1526 |
| NaeI | GCCGGC | 1 cut(s) | 305 |
| NcoI | CCATGG | 2 cut(s) | 94, 735 |
| NdeII | GATC | 7 cut(s) | 24, 52, 489, 678, 709, 1022, 1336 |
| NgoMIV | GCCGGC | 1 cut(s) | 303 |
| NlaIII | CATG | 5 cut(s) | 98, 223, 318, 725, 739 |
| NlaIV | GGNNCC | 2 cut(s) | 333, 452 |
| NmeAIII | GCCGAG | 1 cut(s) | 1451 |
| NmuCI | GTSAC | 2 cut(s) | 652, 683 |
| NspI | RCATGY | 2 cut(s) | 318, 725 |
| PceI | AGGCCT | 2 cut(s) | 46, 1228 |
| PciSI | GCTCTTC | 1 cut(s) | 747 |
| PdiI | GCCGGC | 1 cut(s) | 305 |
| PfeI | GAWTC | 3 cut(s) | 124, 502, 598 |
| PkrI | GCNGC | 4 cut(s) | 79, 263, 359, 1459 |
| PleI | GAGTC | 1 cut(s) | 33 |
| PmaCI | CACGTG | 1 cut(s) | 403 |
| PmlI | CACGTG | 1 cut(s) | 403 |
| PpsI | GAGTC | 1 cut(s) | 33 |
| Ppu21I | YACGTR | 1 cut(s) | 403 |
| Psp6I | CCWGG | 3 cut(s) | 46, 307, 465 |
| PspCI | CACGTG | 1 cut(s) | 403 |
| PspFI | CCCAGC | 3 cut(s) | 959, 1018, 1585 |
| PspGI | CCWGG | 3 cut(s) | 46, 307, 465 |
| PspN4I | GGNNCC | 2 cut(s) | 333, 452 |
| PspPI | GGNCC | 1 cut(s) | 1291 |
| PstI | CTGCAG | 1 cut(s) | 179 |
| PstNI | CAGNNNCTG | 1 cut(s) | 183 |
| RsaI | GTAC | 1 cut(s) | 907 |
| RsaNI | GTAC | 1 cut(s) | 906 |
| SapI | GCTCTTC | 1 cut(s) | 747 |
| SaqAI | TTAA | 9 cut(s) | 132, 374, 560, 692, 816, 990, 1245, 1283, 1594 |
| SatI | GCNGC | 4 cut(s) | 78, 262, 358, 1458 |
| Sau3AI | GATC | 7 cut(s) | 24, 52, 489, 678, 709, 1022, 1336 |
| Sau96I | GGNCC | 1 cut(s) | 1291 |
| SchI | GAGTC | 1 cut(s) | 33 |
| ScrFI | CCNGG | 3 cut(s) | 48, 309, 467 |
| SduI | GDGCHC | 1 cut(s) | 476 |
| SfaNI | GCATC | 1 cut(s) | 1302 |
| SfcI | CTRYAG | 1 cut(s) | 175 |
| SgrAI | CRCCGGYG | 1 cut(s) | 323 |
| SmlI | CTYRAG | 1 cut(s) | 1295 |
| SmoI | CTYRAG | 1 cut(s) | 1295 |
| Sse9I | AATT | 6 cut(s) | 778, 813, 873, 925, 1246, 1490 |
| SseBI | AGGCCT | 2 cut(s) | 46, 1228 |
| SsiI | CCGC | 8 cut(s) | 77, 241, 259, 262, 358, 431, 454, 1003 |
| StuI | AGGCCT | 2 cut(s) | 46, 1228 |
| StyD4I | CCNGG | 3 cut(s) | 46, 307, 465 |
| StyI | CCWWGG | 2 cut(s) | 94, 735 |
| TaaI | ACNGT | 3 cut(s) | 185, 236, 1268 |
| TaiI | ACGT | 3 cut(s) | 297, 405, 1222 |
| TaqI | TCGA | 4 cut(s) | 27, 158, 772, 1238 |
| TasI | AATT | 6 cut(s) | 778, 813, 873, 925, 1246, 1490 |
| TauI | GCSGC | 3 cut(s) | 80, 264, 360 |
| TfiI | GAWTC | 3 cut(s) | 124, 502, 598 |
| Tru1I | TTAA | 9 cut(s) | 132, 374, 560, 692, 816, 990, 1245, 1283, 1594 |
| Tru9I | TTAA | 9 cut(s) | 132, 374, 560, 692, 816, 990, 1245, 1283, 1594 |
| TscAI | CASTG | 2 cut(s) | 688, 1271 |
| TseFI | GTSAC | 2 cut(s) | 652, 683 |
| TseI | GCWGC | 1 cut(s) | 1457 |
| Tsp45I | GTSAC | 2 cut(s) | 652, 683 |
| TspDTI | ATGAA | 4 cut(s) | 94, 1013, 1197, 1223 |
| TspGWI | ACGGA | 1 cut(s) | 702 |
| TspRI | CASTG | 2 cut(s) | 688, 1271 |
| XapI | RAATTY | 1 cut(s) | 1490 |
| XceI | RCATGY | 2 cut(s) | 318, 725 |