Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002318

Physical Location & Seq

Genomic Coordinates Reverse (-)

24094359 .. 24096532

Gene Structure 2174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGCAGACGAGATCCTCTTCCTCTCCTTCGGCTAACCACCGCCGCGAAACCCAGTTGCAGATCGCGGATCCCACCTCGTTTTGCGGCAAGATTATGCCTGGTTGGACCGTCGTGAATCGGCCGCGATCTAGCAACAACGGTGTTGTTGATACGTACTTTATCGAGCCAGGGACTGGTAGACAGTTTTCATCACTAGAAGCTATTCACAGACACTTGGCTGGAGAAGTAAATGACAGACGCTTGACTCGAGCAGGATCCTTTTTCCAGGACAAGACAAGGGTTTATGAAGGATCAAGAACCAAACAGGATCACTGCGGAGTTGAATATGCCTCCAAAGGTTTCCGATTGCCTAGAGGATGGTCCGTTGAGGAGGTTCCGAGGAAAAACTCTCATTATATTGATAAGTATTATGTTGAGCGAAAAACAGGAAAGCGCTTCCGTTCTCTTGTTTCCGTTGAGAGATACTTAAGAGAATCCCGGAACTCTATAGAGCAGCAGCTTAGGGTTTTACAGAATCGCCGTGGCCATTCCAAAGATTTCAGGTTACCTGATGGATGGATCGTTGAGGAGAAACCGCGAAGAAGTTCCAGTCATATAGACAGGTCATATATTGAGCCAGGAACAGGGAATAAATTCCGTTCCATGGCAGCCGTTGAGAGATACTTGATATCAGTCGGGAACATTACACTTGACTCGGTTTCTATGGTGCATTCGGAGCGGCTTCCTCTTCTGATGAACCGGAATGGTATCAGATTTCAGAGCGAAGTTATTGACCCAAACCCACCGAAGAAAGTAAAGTGGGTTCTTACCGGTTCCGGCGGAAACATGTTCACTGCGAATGTACGCGGATCGAATGTCTCTAGCTTGGTTAAACATACATGGTCCGAGGCATTTGTTTCACTGATCGAAGACCGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0008327 GO:0009628 GO:0009893 GO:0010369 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0098687 GO:1901265 GO:1901363 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

306

Amino Acids

35.03

Weight (kDa)

10.19

Isoelectric Point (pI)

59.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	115 - 161	3.6e-07	Methyl-CpG binding domain
MBD	PF01429	176 - 227	2.7e-08	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59800
fragaria_vesca	FvH4_3g35002 FvH4_3g35002 FvH4_3g35010
malus_domestica	MD03G1099400.v1.1 MD03G1099500.v1.1 MD11G1113700.v1.1
prunus_persica	Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084300_v2.0.a1 Prupe.6G084500_v2.0.a1
pyrus_communis	pycom03g08180 pycom03g08190 pycom11g09570
rosa_chinensis	RchiOBHm_Chr5g0062921 RchiOBHm_Chr5g0062931
rosa_laevigata	RLG00000009507 RLG00000035590 RLG00000035591
rosa_multiflora	Rmu_co7996734.1_g000001 Rmu_sc0000192.1_g000027 Rmu_sc0001738.1_g000035 Rmu_sc0003303.1_g000011 Rmu_sc0006171.1_g000008 Rmu_sc0010322.1_g000002 Rmu_sc0010322.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017700 Rroxscaffold_1G00017710
rosa_rugosa	Rorug05G0352700 Rorug05G0352700 Rorug05G0352800 Rorug05G0352900
rosa_samantha	Rh5AG413800 Rh5AG413900 Rh5BG428000 Rh5BG428100 Rh5CG451600 Rh5CG451700 Rh5DG441700 Rh5DG441800
rosa_wichuraiana	Rw5G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	173
AccBSI	CCGCTC	2 cut(s)	718, 915
AccI	GTMKAC	1 cut(s)	178
AccII	CGCG	5 cut(s)	45, 65, 124, 577, 846
AclWI	GGATC	9 cut(s)	6, 62, 75, 249, 262, 298, 315, 566, 856
AcoI	YGGCCR	2 cut(s)	119, 523
AcsI	RAATTY	1 cut(s)	632
AfaI	GTAC	2 cut(s)	155, 843
AfeI	AGCGCT	1 cut(s)	434
AfiI	CCNNNNNNNGG	3 cut(s)	173, 623, 643
AflII	CTTAAG	1 cut(s)	466
AflIII	ACRYGT	1 cut(s)	825
AgeI	ACCGGT	1 cut(s)	809
AgsI	TTSAA	1 cut(s)	323
AjnI	CCWGG	4 cut(s)	97, 166, 264, 616
AluBI	AGCT	3 cut(s)	200, 499, 864
AluI	AGCT	3 cut(s)	200, 499, 864
Alw26I	GTCTC	1 cut(s)	862
AlwI	GGATC	9 cut(s)	6, 62, 75, 249, 262, 298, 315, 566, 856
AlwNI	CAGNNNCTG	1 cut(s)	173
Ama87I	CYCGRG	1 cut(s)	246
Aor51HI	AGCGCT	1 cut(s)	434
AoxI	GGCC	2 cut(s)	119, 523
ApeKI	GCWGC	3 cut(s)	493, 496, 647
ApoI	RAATTY	1 cut(s)	632
AsiGI	ACCGGT	1 cut(s)	809
Asp700I	GAANNNNTTC	3 cut(s)	201, 583, 632
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	3 cut(s)	105, 360, 882
AsuC2I	CCSGG	1 cut(s)	478
AvaI	CYCGRG	1 cut(s)	246
AvaII	GGWCC	3 cut(s)	105, 360, 882
BalI	TGGCCA	1 cut(s)	525
BamHI	GGATCC	2 cut(s)	67, 254
BbsI	GAAGAC	1 cut(s)	915
BbvI	GCAGC	3 cut(s)	505, 508, 659
BccI	CCATC	3 cut(s)	351, 545, 549
BceAI	ACGGC	2 cut(s)	504, 635
BciT130I	CCWGG	4 cut(s)	99, 168, 266, 618
BcnI	CCSGG	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	862
BfaI	CTAG	4 cut(s)	129, 194, 351, 861
BfmI	CTRYAG	1 cut(s)	486
BfoI	RGCGCY	1 cut(s)	436
BfrI	CTTAAG	1 cut(s)	466
BisI	GCNGC	7 cut(s)	43, 85, 122, 494, 497, 648, 719
BlsI	GCNGC	7 cut(s)	44, 86, 123, 495, 498, 649, 720
Bme1390I	CCNGG	5 cut(s)	99, 168, 266, 478, 618
Bme18I	GGWCC	3 cut(s)	105, 360, 882
BmeT110I	CYCGRG	1 cut(s)	246
BmgT120I	GGNCC	3 cut(s)	105, 360, 882
BmiI	GGNNCC	4 cut(s)	69, 256, 375, 814
BmrFI	CCNGG	5 cut(s)	99, 168, 266, 478, 618
BmrI	ACTGGG	1 cut(s)	46
BmuI	ACTGGG	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	915
BpmI	CTGGAG	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	500
BpuMI	CCSGG	1 cut(s)	478
BsaAI	YACGTR	1 cut(s)	153
BsaJI	CCNNGG	5 cut(s)	167, 377, 520, 642, 885
BsaWI	WCCGGW	2 cut(s)	738, 809
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 623, 643
Bse118I	RCCGGY	1 cut(s)	809
Bse1I	ACTGG	3 cut(s)	52, 178, 588
BseBI	CCWGG	4 cut(s)	99, 168, 266, 618
BseDI	CCNNGG	5 cut(s)	167, 377, 520, 642, 885
BseGI	GGATG	2 cut(s)	362, 560
BseLI	CCNNNNNNNGG	3 cut(s)	173, 623, 643
BseNI	ACTGG	3 cut(s)	52, 178, 588
BseRI	GAGGAG	2 cut(s)	383, 581
BseX3I	CGGCCG	1 cut(s)	119
BseXI	GCAGC	3 cut(s)	505, 508, 659
Bsh1236I	CGCG	5 cut(s)	45, 65, 124, 577, 846
Bsh1285I	CGRYCG	1 cut(s)	122
BshFI	GGCC	2 cut(s)	121, 525
BshTI	ACCGGT	1 cut(s)	809
BsiEI	CGRYCG	1 cut(s)	122
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	4 cut(s)	478, 739, 810, 816
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	3 cut(s)	173, 623, 643
BsmAI	GTCTC	1 cut(s)	862
BsmFI	GGGAC	1 cut(s)	184
BsmI	GAATGC	1 cut(s)	709
BsnI	GGCC	2 cut(s)	121, 525
BsoBI	CYCGRG	1 cut(s)	246
Bsp19I	CCATGG	1 cut(s)	642
BspANI	GGCC	2 cut(s)	121, 525
BspFNI	CGCG	5 cut(s)	45, 65, 124, 577, 846
BspLI	GGNNCC	4 cut(s)	69, 256, 375, 814
BspPI	GGATC	9 cut(s)	6, 62, 75, 249, 262, 298, 315, 566, 856
BspTI	CTTAAG	1 cut(s)	466
BsrBI	CCGCTC	2 cut(s)	718, 915
BsrFI	RCCGGY	1 cut(s)	809
BsrI	ACTGG	3 cut(s)	52, 178, 588
BssAI	RCCGGY	1 cut(s)	809
BssECI	CCNNGG	5 cut(s)	167, 377, 520, 642, 885
BssT1I	CCWWGG	1 cut(s)	642
Bst2UI	CCWGG	4 cut(s)	99, 168, 266, 618
Bst4CI	ACNGT	3 cut(s)	109, 140, 183
Bst6I	CTCTTC	2 cut(s)	22, 732
BstAFI	CTTAAG	1 cut(s)	466
BstBAI	YACGTR	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	500
BstDSI	CCRYGG	2 cut(s)	520, 642
BstEII	GGTNACC	1 cut(s)	543
BstF5I	GGATG	2 cut(s)	362, 560
BstFNI	CGCG	5 cut(s)	45, 65, 124, 577, 846
BstH2I	RGCGCY	1 cut(s)	436
BstHHI	GCGC	1 cut(s)	435
BstMAI	GTCTC	1 cut(s)	862
BstMCI	CGRYCG	1 cut(s)	122
BstMWI	GCNNNNNNNGC	1 cut(s)	715
BstNI	CCWGG	4 cut(s)	99, 168, 266, 618
BstNSI	RCATGY	1 cut(s)	829
BstPI	GGTNACC	1 cut(s)	543
BstSCI	CCNGG	5 cut(s)	97, 166, 264, 476, 616
BstSFI	CTRYAG	1 cut(s)	486
BstSNI	TACGTA	1 cut(s)	153
BstUI	CGCG	5 cut(s)	45, 65, 124, 577, 846
BstV1I	GCAGC	3 cut(s)	505, 508, 659
BstV2I	GAAGAC	1 cut(s)	915
BstX2I	RGATCY	3 cut(s)	11, 67, 254
BstYI	RGATCY	3 cut(s)	11, 67, 254
BstZI	CGGCCG	1 cut(s)	119
BsuRI	GGCC	2 cut(s)	121, 525
BtgI	CCRYGG	2 cut(s)	520, 642
BtsCI	GGATG	2 cut(s)	362, 560
BtsI	GCAGTG	2 cut(s)	310, 831
BtsIMutI	CAGTG	3 cut(s)	310, 831, 899
CaiI	CAGNNNCTG	1 cut(s)	173
CfoI	GCGC	1 cut(s)	435
Cfr10I	RCCGGY	1 cut(s)	809
Cfr13I	GGNCC	3 cut(s)	105, 360, 882
CseI	GACGC	1 cut(s)	246
Csp6I	GTAC	2 cut(s)	154, 842
CspAI	ACCGGT	1 cut(s)	809
CviAII	CATG	3 cut(s)	643, 826, 879
CviQI	GTAC	2 cut(s)	154, 842
DdeI	CTNAG	1 cut(s)	500
EaeI	YGGCCR	2 cut(s)	119, 523
EagI	CGGCCG	1 cut(s)	119
Eam1104I	CTCTTC	2 cut(s)	22, 732
EarI	CTCTTC	2 cut(s)	22, 732
EciI	GGCGGA	1 cut(s)	834
EclXI	CGGCCG	1 cut(s)	119
Eco105I	TACGTA	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	642
Eco32I	GATATC	1 cut(s)	669
Eco47I	GGWCC	3 cut(s)	105, 360, 882
Eco47III	AGCGCT	1 cut(s)	434
Eco52I	CGGCCG	1 cut(s)	119
Eco88I	CYCGRG	1 cut(s)	246
Eco91I	GGTNACC	1 cut(s)	543
EcoO65I	GGTNACC	1 cut(s)	543
EcoRII	CCWGG	4 cut(s)	97, 166, 264, 616
EcoRV	GATATC	1 cut(s)	669
EcoT14I	CCWWGG	1 cut(s)	642
ErhI	CCWWGG	1 cut(s)	642
FaeI	CATG	3 cut(s)	646, 829, 882
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	3 cut(s)	642, 825, 878
FblI	GTMKAC	1 cut(s)	178
Fnu4HI	GCNGC	7 cut(s)	43, 85, 122, 494, 497, 648, 719
FokI	GGATG	2 cut(s)	369, 567
Fsp4HI	GCNGC	7 cut(s)	43, 85, 122, 494, 497, 648, 719
FspBI	CTAG	4 cut(s)	129, 194, 351, 861
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	7 cut(s)	43, 85, 122, 494, 497, 648, 719
GsuI	CTGGAG	1 cut(s)	240
HaeII	RGCGCY	1 cut(s)	436
HaeIII	GGCC	2 cut(s)	121, 525
HapII	CCGG	4 cut(s)	478, 739, 810, 816
HgaI	GACGC	1 cut(s)	246
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	3 cut(s)	646, 829, 882
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HinfI	GANTC	5 cut(s)	115, 244, 473, 514, 692
HpaII	CCGG	4 cut(s)	478, 739, 810, 816
Hpy166II	GTNNAC	2 cut(s)	179, 831
Hpy188I	TCNGA	7 cut(s)	344, 378, 715, 732, 752, 759, 886
Hpy188III	TCNNGA	3 cut(s)	112, 294, 676
Hpy8I	GTNNAC	2 cut(s)	179, 831
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	36, 281
HpyCH4III	ACNGT	3 cut(s)	109, 140, 183
HpyCH4IV	ACGT	1 cut(s)	152
HpyCH4V	TGCA	3 cut(s)	4, 58, 709
HpyF10VI	GCNNNNNNNGC	1 cut(s)	715
HpyF3I	CTNAG	1 cut(s)	500
HpySE526I	ACGT	1 cut(s)	152
Hsp92II	CATG	3 cut(s)	646, 829, 882
HspAI	GCGC	1 cut(s)	433
LmnI	GCTCC	1 cut(s)	715
Lsp1109I	GCAGC	3 cut(s)	505, 508, 659
MaeI	CTAG	4 cut(s)	129, 194, 351, 861
MaeII	ACGT	1 cut(s)	152
MaeIII	GTNAC	1 cut(s)	543
MbiI	CCGCTC	2 cut(s)	718, 915
MboII	GAAGA	5 cut(s)	9, 591, 719, 799, 920
MflI	RGATCY	3 cut(s)	11, 67, 254
MlsI	TGGCCA	1 cut(s)	525
MluCI	AATT	1 cut(s)	632
MluNI	TGGCCA	1 cut(s)	525
MlyI	GAGTC	2 cut(s)	238, 686
MmeI	TCCRAC	1 cut(s)	83
Mox20I	TGGCCA	1 cut(s)	525
MroXI	GAANNNNTTC	3 cut(s)	201, 583, 632
MscI	TGGCCA	1 cut(s)	525
MseI	TTAA	3 cut(s)	467, 870, 919
Msp20I	TGGCCA	1 cut(s)	525
MspCI	CTTAAG	1 cut(s)	466
MspI	CCGG	4 cut(s)	478, 739, 810, 816
MspR9I	CCNGG	5 cut(s)	99, 168, 266, 478, 618
Mva1269I	GAATGC	1 cut(s)	709
MvaI	CCWGG	4 cut(s)	99, 168, 266, 618
MvnI	CGCG	5 cut(s)	45, 65, 124, 577, 846
MwoI	GCNNNNNNNGC	1 cut(s)	715
NciI	CCSGG	1 cut(s)	478
NcoI	CCATGG	1 cut(s)	642
NlaIII	CATG	3 cut(s)	646, 829, 882
NlaIV	GGNNCC	4 cut(s)	69, 256, 375, 814
NspI	RCATGY	1 cut(s)	829
PaeR7I	CTCGAG	1 cut(s)	246
PciI	ACATGT	1 cut(s)	825
PcsI	WCGNNNNNNNCGW	1 cut(s)	244
PctI	GAATGC	1 cut(s)	709
PdmI	GAANNNNTTC	3 cut(s)	201, 583, 632
PfeI	GAWTC	3 cut(s)	115, 473, 514
PflMI	CCANNNNNTGG	1 cut(s)	173
PfoI	TCCNGGA	2 cut(s)	264, 476
PinAI	ACCGGT	1 cut(s)	809
PkrI	GCNGC	7 cut(s)	44, 86, 123, 495, 498, 649, 720
PleI	GAGTC	2 cut(s)	238, 686
PpsI	GAGTC	2 cut(s)	238, 686
Ppu21I	YACGTR	1 cut(s)	153
PscI	ACATGT	1 cut(s)	825
Psp6I	CCWGG	4 cut(s)	97, 166, 264, 616
PspEI	GGTNACC	1 cut(s)	543
PspGI	CCWGG	4 cut(s)	97, 166, 264, 616
PspN4I	GGNNCC	4 cut(s)	69, 256, 375, 814
PspPI	GGNCC	3 cut(s)	105, 360, 882
PspXI	VCTCGAGB	1 cut(s)	246
PsrI	GAACNNNNNNTAC	2 cut(s)	786, 818
PstNI	CAGNNNCTG	1 cut(s)	173
PsuI	RGATCY	3 cut(s)	11, 67, 254
RsaI	GTAC	2 cut(s)	155, 843
RsaNI	GTAC	2 cut(s)	154, 842
SaqAI	TTAA	3 cut(s)	467, 870, 919
SatI	GCNGC	7 cut(s)	43, 85, 122, 494, 497, 648, 719
Sau96I	GGNCC	3 cut(s)	105, 360, 882
SchI	GAGTC	2 cut(s)	238, 686
ScrFI	CCNGG	5 cut(s)	99, 168, 266, 478, 618
SfcI	CTRYAG	1 cut(s)	486
Sfr274I	CTCGAG	1 cut(s)	246
SinI	GGWCC	3 cut(s)	105, 360, 882
SlaI	CTCGAG	1 cut(s)	246
SmlI	CTYRAG	2 cut(s)	246, 466
SmoI	CTYRAG	2 cut(s)	246, 466
SnaBI	TACGTA	1 cut(s)	153
Sse9I	AATT	1 cut(s)	632
SspMI	CTAG	4 cut(s)	129, 194, 351, 861
StyD4I	CCNGG	5 cut(s)	97, 166, 264, 476, 616
StyI	CCWWGG	1 cut(s)	642
TaaI	ACNGT	3 cut(s)	109, 140, 183
TaiI	ACGT	1 cut(s)	155
TaqI	TCGA	4 cut(s)	162, 247, 851, 906
TasI	AATT	1 cut(s)	632
TauI	GCSGC	4 cut(s)	45, 87, 124, 721
TfiI	GAWTC	3 cut(s)	115, 473, 514
Tru1I	TTAA	3 cut(s)	467, 870, 919
Tru9I	TTAA	3 cut(s)	467, 870, 919
TscAI	CASTG	3 cut(s)	317, 838, 906
TseI	GCWGC	3 cut(s)	493, 496, 647
TspDTI	ATGAA	3 cut(s)	177, 300, 749
TspGWI	ACGGA	4 cut(s)	352, 428, 442, 626
TspRI	CASTG	3 cut(s)	317, 838, 906
Van91I	CCANNNNNTGG	1 cut(s)	173
Vha464I	CTTAAG	1 cut(s)	466
VpaK11BI	GGWCC	3 cut(s)	105, 360, 882
XapI	RAATTY	1 cut(s)	632
XceI	RCATGY	1 cut(s)	829
XhoI	CTCGAG	1 cut(s)	246
XmiI	GTMKAC	1 cut(s)	178
XmnI	GAANNNNTTC	3 cut(s)	201, 583, 632
XspI	CTAG	4 cut(s)	129, 194, 351, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.