Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002318

Physical Location & Seq

Genomic Coordinates Forward (+)

8502386 .. 8505298

Gene Structure 2913 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1099400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAAGAAGGGAAAATCGTCAGAGTCGCAGACAGTTCCTCTTCGGACAATGAGGCCGGCGGAAGAACACGAAGAACCCTTCAATTGCAAAAGGCAATTGCAATTGGTCACCACATCACCCTTCAGACTCCCCGATGATTGGTTCGTTGAGGAAAAGCGCCGTCCCCTCAGCAACATTTGCAACCCCGGCAAAATCGACAGGTATTACATTGAGGCTGATACGGGACTGAGGTTTCGTTCACTGCCTGCTGTACAGAGATACCTAACTGAAGGGCAAACCGAAACATTTACCAAGAGATTAAAACCAGGCAGTGAATGCCTTGTGAGTTCTAGGATCCAAAAAGTTGTCAATCCAAAACATAAGCAAATTACACCATGCACCACCAGGAGAACTTCTTCATCCTTTAAACTACCTGATGGTTGGGAAATTGAGGAAAAGCCACGAAGGAAGTCTCGTGTCATAGACAAGACTTATATCGAGCCAGTTACTGGAAGGCAGTTCCGTTCGCTAGTAGCAGTTGAGAGATACCTAACAGAAGCAAATGAAGAAGTTCCACTCAAGGCATTGATGCCTGCCACCAAGTCTAGTATATCGAGTGGCTCTTGCCATCAGAAGACAAAAAGTTCGGCTGAAAGCGAGCCCCAGAATGTTGGTTCTAGTTCTCTGAAAAGAAATATTTCCGGTGAGAATGATAGACCCTCCGAGCTCAATTTTGGCAGGCCACCGGCAAAAGTTAAATGGGTCCTCCGTCGTCCTGGAGGGAATATGTGGAATCCCGTCATTGACGATTCTAAGGTCCCGGATTCTGTAAAGCAGAGCTGGTCCGAGAGTTTCAAATCATCCCTCTCTGGTGGAAATATCAGTGCACCAATTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0008327 GO:0009628 GO:0009893 GO:0010369 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0098687 GO:1901265 GO:1901363 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

293

Amino Acids

33.05

Weight (kDa)

9.74

Isoelectric Point (pI)

82.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	132 - 186	2.8e-07	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59800
fragaria_vesca	FvH4_3g35002 FvH4_3g35002 FvH4_3g35010
malus_domestica	MD03G1099400.v1.1 MD03G1099500.v1.1 MD11G1113700.v1.1
prunus_persica	Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084300_v2.0.a1 Prupe.6G084500_v2.0.a1
pyrus_communis	pycom03g08180 pycom03g08190 pycom11g09570
rosa_chinensis	RchiOBHm_Chr5g0062921 RchiOBHm_Chr5g0062931
rosa_laevigata	RLG00000009507 RLG00000035590 RLG00000035591
rosa_multiflora	Rmu_co7996734.1_g000001 Rmu_sc0000192.1_g000027 Rmu_sc0001738.1_g000035 Rmu_sc0003303.1_g000011 Rmu_sc0006171.1_g000008 Rmu_sc0010322.1_g000002 Rmu_sc0010322.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017700 Rroxscaffold_1G00017710
rosa_rugosa	Rorug05G0352700 Rorug05G0352700 Rorug05G0352800 Rorug05G0352900
rosa_samantha	Rh5AG413800 Rh5AG413900 Rh5BG428000 Rh5BG428100 Rh5CG451600 Rh5CG451700 Rh5DG441700 Rh5DG441800
rosa_wichuraiana	Rw5G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	488
AciI	CCGC	1 cut(s)	59
AclWI	GGATC	2 cut(s)	328, 341
AcuI	CTGAAG	2 cut(s)	106, 288
AfaI	GTAC	1 cut(s)	252
AfiI	CCNNNNNNNGG	2 cut(s)	138, 488
AgsI	TTSAA	2 cut(s)	82, 835
AjnI	CCWGG	3 cut(s)	304, 383, 754
AluBI	AGCT	2 cut(s)	706, 819
AluI	AGCT	2 cut(s)	706, 819
Alw21I	GWGCWC	2 cut(s)	708, 868
Alw26I	GTCTC	1 cut(s)	456
Alw44I	GTGCAC	1 cut(s)	864
AlwI	GGATC	2 cut(s)	328, 341
AlwNI	CAGNNNCTG	1 cut(s)	488
AoxI	GGCC	2 cut(s)	53, 719
ApaLI	GTGCAC	1 cut(s)	864
ArsI	GACNNNNNNTTYG	4 cut(s)	216, 248, 607, 639
Asp700I	GAANNNNTTC	3 cut(s)	394, 549, 676
AspLEI	GCGC	1 cut(s)	159
AspS9I	GGNCC	3 cut(s)	742, 796, 822
AsuC2I	CCSGG	2 cut(s)	186, 800
AsuHPI	GGTGA	3 cut(s)	100, 108, 695
AvaII	GGWCC	3 cut(s)	742, 796, 822
BaeGI	GKGCMC	1 cut(s)	868
BamHI	GGATCC	1 cut(s)	333
BanII	GRGCYC	2 cut(s)	642, 708
BauI	CACGAG	1 cut(s)	453
BbsI	GAAGAC	1 cut(s)	620
Bbv12I	GWGCWC	2 cut(s)	708, 868
BbvCI	CCTCAGC	1 cut(s)	167
BccI	CCATC	2 cut(s)	410, 615
BceAI	ACGGC	1 cut(s)	144
BciT130I	CCWGG	3 cut(s)	306, 385, 756
BcnI	CCSGG	2 cut(s)	186, 800
BcoDI	GTCTC	1 cut(s)	456
BfaI	CTAG	4 cut(s)	330, 509, 585, 657
BfoI	RGCGCY	1 cut(s)	160
Bme1390I	CCNGG	5 cut(s)	186, 306, 385, 756, 800
Bme18I	GGWCC	3 cut(s)	742, 796, 822
BmgT120I	GGNCC	3 cut(s)	742, 796, 822
BmiI	GGNNCC	3 cut(s)	335, 743, 798
BmrFI	CCNGG	5 cut(s)	186, 306, 385, 756, 800
BmsI	GCATC	1 cut(s)	558
BpiI	GAAGAC	1 cut(s)	620
BpmI	CTGGAG	1 cut(s)	777
Bpu10I	CCTNAGC	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	542
BpuMI	CCSGG	2 cut(s)	186, 800
BsaJI	CCNNGG	1 cut(s)	184
BsaWI	WCCGGW	1 cut(s)	680
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 488
Bse118I	RCCGGY	2 cut(s)	55, 724
Bse1I	ACTGG	2 cut(s)	482, 493
BseBI	CCWGG	3 cut(s)	306, 385, 756
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	2 cut(s)	398, 839
BseLI	CCNNNNNNNGG	2 cut(s)	138, 488
BseMII	CTCAG	2 cut(s)	181, 218
BseNI	ACTGG	2 cut(s)	482, 493
BseSI	GKGCMC	1 cut(s)	868
BshFI	GGCC	2 cut(s)	55, 721
BsiHKAI	GWGCWC	2 cut(s)	708, 868
BsiSI	CCGG	5 cut(s)	56, 186, 681, 725, 800
BslFI	GGGAC	3 cut(s)	147, 237, 782
BslI	CCNNNNNNNGG	2 cut(s)	138, 488
BsmAI	GTCTC	1 cut(s)	456
BsmFI	GGGAC	3 cut(s)	147, 237, 782
BsmI	GAATGC	1 cut(s)	320
BsnI	GGCC	2 cut(s)	55, 721
Bsp1286I	GDGCHC	3 cut(s)	642, 708, 868
Bsp1407I	TGTACA	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	333
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	2 cut(s)	55, 721
BspCNI	CTCAG	2 cut(s)	180, 219
BspLI	GGNNCC	3 cut(s)	335, 743, 798
BspPI	GGATC	2 cut(s)	328, 341
BsrFI	RCCGGY	2 cut(s)	55, 724
BsrGI	TGTACA	1 cut(s)	250
BsrI	ACTGG	2 cut(s)	482, 493
BssAI	RCCGGY	2 cut(s)	55, 724
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	1 cut(s)	333
BssSI	CACGAG	1 cut(s)	453
Bst2BI	CACGAG	1 cut(s)	453
Bst2UI	CCWGG	3 cut(s)	306, 385, 756
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	45
BstAPI	GCANNNNNTGC	2 cut(s)	177, 315
BstAUI	TGTACA	1 cut(s)	250
BstC8I	GCNNGC	5 cut(s)	57, 246, 573, 638, 719
BstDEI	CTNAG	3 cut(s)	167, 227, 792
BstEII	GGTNACC	1 cut(s)	106
BstF5I	GGATG	2 cut(s)	398, 839
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	1 cut(s)	336
BstMAI	GTCTC	1 cut(s)	456
BstMBI	GATC	1 cut(s)	333
BstMWI	GCNNNNNNNGC	3 cut(s)	177, 186, 315
BstNI	CCWGG	3 cut(s)	306, 385, 756
BstPI	GGTNACC	1 cut(s)	106
BstSCI	CCNGG	5 cut(s)	184, 304, 383, 754, 798
BstSLI	GKGCMC	1 cut(s)	868
BstV2I	GAAGAC	1 cut(s)	620
BstX2I	RGATCY	1 cut(s)	333
BstXI	CCANNNNNNTGG	1 cut(s)	650
BstYI	RGATCY	1 cut(s)	333
BsuRI	GGCC	2 cut(s)	55, 721
BtsCI	GGATG	2 cut(s)	398, 839
BtsI	GCAGTG	2 cut(s)	239, 316
BtsIMutI	CAGTG	3 cut(s)	239, 316, 868
Cac8I	GCNNGC	5 cut(s)	57, 246, 573, 638, 719
CaiI	CAGNNNCTG	1 cut(s)	488
CfoI	GCGC	1 cut(s)	159
Cfr10I	RCCGGY	2 cut(s)	55, 724
Cfr13I	GGNCC	3 cut(s)	742, 796, 822
Csp6I	GTAC	1 cut(s)	251
CviAII	CATG	1 cut(s)	375
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	3 cut(s)	167, 227, 792
DpnI	GATC	1 cut(s)	335
DpnII	GATC	1 cut(s)	333
DraI	TTTAAA	1 cut(s)	406
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
EciI	GGCGGA	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	706
Eco24I	GRGCYC	2 cut(s)	642, 708
Eco47I	GGWCC	3 cut(s)	742, 796, 822
Eco53kI	GAGCTC	1 cut(s)	706
Eco57I	CTGAAG	2 cut(s)	106, 288
Eco91I	GGTNACC	1 cut(s)	106
EcoICRI	GAGCTC	1 cut(s)	706
EcoO109I	RGGNCCY	2 cut(s)	742, 796
EcoO65I	GGTNACC	1 cut(s)	106
EcoRII	CCWGG	3 cut(s)	304, 383, 754
EcoT38I	GRGCYC	2 cut(s)	642, 708
FaeI	CATG	1 cut(s)	378
FaiI	YATR	7 cut(s)	360, 376, 461, 474, 590, 767, 877
FaqI	GGGAC	3 cut(s)	147, 237, 782
FatI	CATG	1 cut(s)	374
FokI	GGATG	2 cut(s)	385, 826
FriOI	GRGCYC	2 cut(s)	642, 708
FspBI	CTAG	4 cut(s)	330, 509, 585, 657
GlaI	GCGC	1 cut(s)	158
GsuI	CTGGAG	1 cut(s)	777
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	55, 721
HapII	CCGG	5 cut(s)	56, 186, 681, 725, 800
HhaI	GCGC	1 cut(s)	159
Hin1II	CATG	1 cut(s)	378
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HinfI	GANTC	5 cut(s)	23, 126, 772, 788, 803
HpaII	CCGG	5 cut(s)	56, 186, 681, 725, 800
HphI	GGTGA	3 cut(s)	100, 108, 695
Hpy166II	GTNNAC	2 cut(s)	239, 866
Hpy188I	TCNGA	7 cut(s)	22, 45, 125, 612, 666, 703, 826
Hpy8I	GTNNAC	2 cut(s)	239, 866
Hpy99I	CGWCG	1 cut(s)	753
HpyAV	CCTTC	5 cut(s)	88, 130, 263, 438, 486
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4V	TGCA	5 cut(s)	87, 100, 180, 378, 866
HpyF10VI	GCNNNNNNNGC	3 cut(s)	177, 186, 315
HpyF3I	CTNAG	3 cut(s)	167, 227, 792
Hsp92II	CATG	1 cut(s)	378
HspAI	GCGC	1 cut(s)	157
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	333
LweI	GCATC	1 cut(s)	558
MaeI	CTAG	4 cut(s)	330, 509, 585, 657
MaeIII	GTNAC	2 cut(s)	106, 484
MalI	GATC	1 cut(s)	335
MboI	GATC	1 cut(s)	333
MboII	GAAGA	7 cut(s)	16, 32, 74, 83, 387, 557, 625
MfeI	CAATTG	3 cut(s)	82, 95, 101
MflI	RGATCY	1 cut(s)	333
MhlI	GDGCHC	3 cut(s)	642, 708, 868
MluCI	AATT	7 cut(s)	82, 95, 101, 366, 426, 709, 870
MlyI	GAGTC	2 cut(s)	32, 120
MroNI	GCCGGC	1 cut(s)	55
MroXI	GAANNNNTTC	3 cut(s)	394, 549, 676
MseI	TTAA	3 cut(s)	299, 405, 735
MspI	CCGG	5 cut(s)	56, 186, 681, 725, 800
MspR9I	CCNGG	5 cut(s)	186, 306, 385, 756, 800
MunI	CAATTG	3 cut(s)	82, 95, 101
Mva1269I	GAATGC	1 cut(s)	320
MvaI	CCWGG	3 cut(s)	306, 385, 756
MwoI	GCNNNNNNNGC	3 cut(s)	177, 186, 315
NaeI	GCCGGC	1 cut(s)	57
NciI	CCSGG	2 cut(s)	186, 800
NdeII	GATC	1 cut(s)	333
NgoMIV	GCCGGC	1 cut(s)	55
NlaIII	CATG	1 cut(s)	378
NlaIV	GGNNCC	3 cut(s)	335, 743, 798
NmuCI	GTSAC	1 cut(s)	106
PctI	GAATGC	1 cut(s)	320
PdiI	GCCGGC	1 cut(s)	57
PdmI	GAANNNNTTC	3 cut(s)	394, 549, 676
PfeI	GAWTC	3 cut(s)	772, 788, 803
PflMI	CCANNNNNTGG	1 cut(s)	488
PfoI	TCCNGGA	2 cut(s)	754, 798
PleI	GAGTC	2 cut(s)	31, 120
PpsI	GAGTC	2 cut(s)	31, 120
PpuMI	RGGWCCY	2 cut(s)	742, 796
Psp124BI	GAGCTC	1 cut(s)	708
Psp5II	RGGWCCY	2 cut(s)	742, 796
Psp6I	CCWGG	3 cut(s)	304, 383, 754
PspEI	GGTNACC	1 cut(s)	106
PspGI	CCWGG	3 cut(s)	304, 383, 754
PspN4I	GGNNCC	3 cut(s)	335, 743, 798
PspPI	GGNCC	3 cut(s)	742, 796, 822
PspPPI	RGGWCCY	2 cut(s)	742, 796
PstNI	CAGNNNCTG	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	333
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
SacI	GAGCTC	1 cut(s)	708
SaqAI	TTAA	3 cut(s)	299, 405, 735
Sau3AI	GATC	1 cut(s)	333
Sau96I	GGNCC	3 cut(s)	742, 796, 822
SchI	GAGTC	2 cut(s)	32, 120
ScrFI	CCNGG	5 cut(s)	186, 306, 385, 756, 800
SduI	GDGCHC	3 cut(s)	642, 708, 868
SetI	ASST	8 cut(s)	203, 233, 264, 415, 531, 708, 798, 821
SfaNI	GCATC	1 cut(s)	558
SinI	GGWCC	3 cut(s)	742, 796, 822
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse9I	AATT	7 cut(s)	82, 95, 101, 366, 426, 709, 870
SsiI	CCGC	1 cut(s)	59
SspI	AATATT	1 cut(s)	676
SspMI	CTAG	4 cut(s)	330, 509, 585, 657
SstI	GAGCTC	1 cut(s)	708
StyD4I	CCNGG	5 cut(s)	184, 304, 383, 754, 798
TaaI	ACNGT	1 cut(s)	34
TaqI	TCGA	3 cut(s)	195, 477, 593
TasI	AATT	7 cut(s)	82, 95, 101, 366, 426, 709, 870
TatI	WGTACW	1 cut(s)	250
TfiI	GAWTC	3 cut(s)	772, 788, 803
Tru1I	TTAA	3 cut(s)	299, 405, 735
Tru9I	TTAA	3 cut(s)	299, 405, 735
TscAI	CASTG	3 cut(s)	246, 316, 868
TseFI	GTSAC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	3 cut(s)	17, 387, 558
TspGWI	ACGGA	2 cut(s)	491, 737
TspRI	CASTG	3 cut(s)	246, 316, 868
Van91I	CCANNNNNTGG	1 cut(s)	488
VneI	GTGCAC	1 cut(s)	864
VpaK11BI	GGWCC	3 cut(s)	742, 796, 822
XmnI	GAANNNNTTC	3 cut(s)	394, 549, 676
XspI	CTAG	4 cut(s)	330, 509, 585, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.