Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002318

Physical Location & Seq

Genomic Coordinates Reverse (-)

53766899 .. 53767644

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009507

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGAACCTGCAAAAATTGGTTGGAAAAACTTAGAATGGACATTCGTAGAGGACAAAGCCTACGAGCAGATCAACGCCAAGTGGTTCGATTTCTTGAACCCCAATGACAACCTCGTCGACGACCACGCCTGTTATGTTCCTTTTCAGCCTGCGAAGCATTCTAGTTCTCCGAAGAAAAATATTTCTGGGGAGACCAGTAGACCCTCAGAGCTCACTAATGGCAGCCCACCAACAAAAGTTAAATGGGTTCTCACCGGTCCTGGGGGAAATATGTGGAACCCCTTCATAGATGTCTCTAGGGTCGCTGATTCTGTAAAGCAAATGTGGTCTGAGATTTTCAGGTCATCATTCTATGAGCTTGAATATCGGGTTTTGGCCATGAGAGGACCACATCATAACCCACCTTTAAAAAATGCCCGGGCAAACACCGTCTCGACCATGAGAGGACCACTTCCTCTTTCTCTCAAGCTAATCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0008327 GO:0009628 GO:0009893 GO:0010369 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0098687 GO:1901265 GO:1901363 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

160

Amino Acids

18.08

Weight (kDa)

9.01

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59800
fragaria_vesca	FvH4_3g35002 FvH4_3g35002 FvH4_3g35010
malus_domestica	MD03G1099400.v1.1 MD03G1099500.v1.1 MD11G1113700.v1.1
prunus_persica	Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084300_v2.0.a1 Prupe.6G084500_v2.0.a1
pyrus_communis	pycom03g08180 pycom03g08190 pycom11g09570
rosa_chinensis	RchiOBHm_Chr5g0062921 RchiOBHm_Chr5g0062931
rosa_laevigata	RLG00000009507 RLG00000035590 RLG00000035591
rosa_multiflora	Rmu_co7996734.1_g000001 Rmu_sc0000192.1_g000027 Rmu_sc0001738.1_g000035 Rmu_sc0003303.1_g000011 Rmu_sc0006171.1_g000008 Rmu_sc0010322.1_g000002 Rmu_sc0010322.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017700 Rroxscaffold_1G00017710
rosa_rugosa	Rorug05G0352700 Rorug05G0352700 Rorug05G0352800 Rorug05G0352900
rosa_samantha	Rh5AG413800 Rh5AG413900 Rh5BG428000 Rh5BG428100 Rh5CG451600 Rh5CG451700 Rh5DG441700 Rh5DG441800
rosa_wichuraiana	Rw5G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	113
Acc36I	ACCTGC	1 cut(s)	16
AccI	GTMKAC	2 cut(s)	117, 199
AcoI	YGGCCR	1 cut(s)	375
AfiI	CCNNNNNNNGG	1 cut(s)	261
AgeI	ACCGGT	1 cut(s)	254
AgsI	TTSAA	2 cut(s)	97, 362
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	3 cut(s)	211, 358, 469
AluI	AGCT	3 cut(s)	211, 358, 469
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	3 cut(s)	185, 298, 436
Ama87I	CYCGRG	1 cut(s)	417
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	1 cut(s)	222
AsiGI	ACCGGT	1 cut(s)	254
Asp700I	GAANNNNTTC	1 cut(s)	281
AspS9I	GGNCC	3 cut(s)	257, 386, 446
AsuC2I	CCSGG	2 cut(s)	418, 419
AsuHPI	GGTGA	1 cut(s)	244
AvaI	CYCGRG	1 cut(s)	417
AvaII	GGWCC	3 cut(s)	257, 386, 446
BalI	TGGCCA	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	234
BciT130I	CCWGG	1 cut(s)	261
BcnI	CCSGG	2 cut(s)	418, 419
BcoDI	GTCTC	3 cut(s)	185, 298, 436
BfaI	CTAG	2 cut(s)	162, 297
BfuAI	ACCTGC	1 cut(s)	16
BisI	GCNGC	1 cut(s)	223
BlsI	GCNGC	1 cut(s)	224
Bme1390I	CCNGG	3 cut(s)	261, 418, 419
Bme18I	GGWCC	3 cut(s)	257, 386, 446
BmeT110I	CYCGRG	1 cut(s)	417
BmgT120I	GGNCC	3 cut(s)	257, 386, 446
BmiI	GGNNCC	2 cut(s)	6, 278
BmrFI	CCNGG	3 cut(s)	261, 418, 419
BpuEI	CTTGAG	1 cut(s)	449
BpuMI	CCSGG	2 cut(s)	418, 419
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	260, 417
BsaWI	WCCGGW	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	1 cut(s)	261
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	2 cut(s)	260, 417
BseLI	CCNNNNNNNGG	1 cut(s)	261
BseMII	CTCAG	2 cut(s)	219, 321
BseNI	ACTGG	1 cut(s)	195
BseXI	GCAGC	1 cut(s)	234
BshFI	GGCC	1 cut(s)	377
BshTI	ACCGGT	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	213
BsiHKCI	CYCGRG	1 cut(s)	417
BsiSI	CCGG	2 cut(s)	255, 418
BslI	CCNNNNNNNGG	1 cut(s)	261
BsmAI	GTCTC	3 cut(s)	185, 298, 436
BsmBI	CGTCTC	1 cut(s)	436
BsmI	GAATGC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	377
Bso31I	GGTCTC	1 cut(s)	185
BsoBI	CYCGRG	1 cut(s)	417
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	69
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	2 cut(s)	218, 322
BspLI	GGNNCC	2 cut(s)	6, 278
BspMI	ACCTGC	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	185
BsrFI	RCCGGY	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	195
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	260, 417
BssMI	GATC	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	430
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	3 cut(s)	31, 205, 330
BstKTI	GATC	1 cut(s)	72
BstMAI	GTCTC	3 cut(s)	185, 298, 436
BstMBI	GATC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstNI	CCWGG	1 cut(s)	261
BstSCI	CCNGG	3 cut(s)	259, 416, 417
BstV1I	GCAGC	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	377
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	150
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	3 cut(s)	257, 386, 446
Cfr9I	CCCGGG	1 cut(s)	417
CspAI	ACCGGT	1 cut(s)	254
CviAII	CATG	2 cut(s)	379, 439
CviJI	RGCY	7 cut(s)	59, 148, 211, 225, 358, 377, 469
CviKI_1	RGCY	7 cut(s)	59, 148, 211, 225, 358, 377, 469
DdeI	CTNAG	3 cut(s)	31, 205, 330
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
DraI	TTTAAA	1 cut(s)	408
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
EaeI	YGGCCR	1 cut(s)	375
Ecl136II	GAGCTC	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	185
Eco47I	GGWCC	3 cut(s)	257, 386, 446
Eco53kI	GAGCTC	1 cut(s)	211
Eco88I	CYCGRG	1 cut(s)	417
EcoICRI	GAGCTC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	436
FaeI	CATG	2 cut(s)	382, 442
FaiI	YATR	7 cut(s)	135, 272, 287, 354, 380, 396, 440
FatI	CATG	2 cut(s)	378, 438
FblI	GTMKAC	2 cut(s)	117, 199
Fnu4HI	GCNGC	1 cut(s)	223
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	1 cut(s)	223
FspBI	CTAG	2 cut(s)	162, 297
GluI	GCNGC	1 cut(s)	223
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	2 cut(s)	255, 418
Hin1II	CATG	2 cut(s)	382, 442
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	1 cut(s)	308
HpaII	CCGG	2 cut(s)	255, 418
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	2 cut(s)	118, 200
Hpy188I	TCNGA	3 cut(s)	171, 208, 331
Hpy188III	TCNNGA	2 cut(s)	94, 433
Hpy8I	GTNNAC	2 cut(s)	118, 200
Hpy99I	CGWCG	2 cut(s)	119, 122
HpyAV	CCTTC	1 cut(s)	292
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4V	TGCA	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
HpyF3I	CTNAG	3 cut(s)	31, 205, 330
Hsp92II	CATG	2 cut(s)	382, 442
Kzo9I	GATC	1 cut(s)	69
Lsp1109I	GCAGC	1 cut(s)	234
MaeI	CTAG	2 cut(s)	162, 297
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	213
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	1 cut(s)	15
MluNI	TGGCCA	1 cut(s)	377
MnlI	CCTC	6 cut(s)	43, 122, 214, 377, 437, 465
Mox20I	TGGCCA	1 cut(s)	377
MroXI	GAANNNNTTC	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	3 cut(s)	240, 407, 478
Msp20I	TGGCCA	1 cut(s)	377
MspI	CCGG	2 cut(s)	255, 418
MspR9I	CCNGG	3 cut(s)	261, 418, 419
Mva1269I	GAATGC	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	154
NciI	CCSGG	2 cut(s)	418, 419
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	2 cut(s)	382, 442
NlaIV	GGNNCC	2 cut(s)	6, 278
PctI	GAATGC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	308
PinAI	ACCGGT	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	224
Psp124BI	GAGCTC	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	2 cut(s)	6, 278
PspPI	GGNCC	3 cut(s)	257, 386, 446
SacI	GAGCTC	1 cut(s)	213
SalI	GTCGAC	1 cut(s)	116
SaqAI	TTAA	3 cut(s)	240, 407, 478
SatI	GCNGC	1 cut(s)	223
Sau3AI	GATC	1 cut(s)	69
Sau96I	GGNCC	3 cut(s)	257, 386, 446
ScrFI	CCNGG	3 cut(s)	261, 418, 419
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	7 cut(s)	10, 114, 213, 344, 360, 406, 471
SgrDI	CGTCGACG	1 cut(s)	116
SinI	GGWCC	3 cut(s)	257, 386, 446
SmaI	CCCGGG	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
SrfI	GCCCGGGC	1 cut(s)	419
Sse9I	AATT	1 cut(s)	15
SspI	AATATT	1 cut(s)	181
SspMI	CTAG	2 cut(s)	162, 297
SstI	GAGCTC	1 cut(s)	213
StyD4I	CCNGG	3 cut(s)	259, 416, 417
TaaI	ACNGT	1 cut(s)	430
TaqI	TCGA	3 cut(s)	87, 117, 434
TasI	AATT	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	3 cut(s)	240, 407, 478
Tru9I	TTAA	3 cut(s)	240, 407, 478
TseI	GCWGC	1 cut(s)	222
TspDTI	ATGAA	1 cut(s)	274
TspMI	CCCGGG	1 cut(s)	417
VpaK11BI	GGWCC	3 cut(s)	257, 386, 446
XmaI	CCCGGG	1 cut(s)	417
XmiI	GTMKAC	2 cut(s)	117, 199
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	2 cut(s)	162, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.