Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002318

Physical Location & Seq

Genomic Coordinates Forward (+)

6579039 .. 6580544

Gene Structure 1506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g08180.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGAAGAAGGGAAAATCGTCAGAGTCGCAGACAGTTCCTCTTCTGACAATGAGGCCGGCGGAAGAAAACGAAAAACCCTTCAATTGCAAAAGGCAATTGCAATTGGTCACCACATCACCCTTCAGACTCCCCGATGATTGGTTCGTTGAGGAAAAGCGTCGTCCCCTCAGCAACATTTGCAACCCCGGCAAAATCGACAGGTCCCGAATTTACTTTGATTATGCAAAGCTTATTGAATTTTGTCCATTGATACAATTCGTGTGCGTAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0008327 GO:0009628 GO:0009893 GO:0010369 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0098687 GO:1901265 GO:1901363 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

91

Amino Acids

10.58

Weight (kDa)

8.76

Isoelectric Point (pI)

74.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59800
fragaria_vesca	FvH4_3g35002 FvH4_3g35002 FvH4_3g35010
malus_domestica	MD03G1099400.v1.1 MD03G1099500.v1.1 MD11G1113700.v1.1
prunus_persica	Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084300_v2.0.a1 Prupe.6G084500_v2.0.a1
pyrus_communis	pycom03g08180 pycom03g08190 pycom11g09570
rosa_chinensis	RchiOBHm_Chr5g0062921 RchiOBHm_Chr5g0062931
rosa_laevigata	RLG00000009507 RLG00000035590 RLG00000035591
rosa_multiflora	Rmu_co7996734.1_g000001 Rmu_sc0000192.1_g000027 Rmu_sc0001738.1_g000035 Rmu_sc0003303.1_g000011 Rmu_sc0006171.1_g000008 Rmu_sc0010322.1_g000002 Rmu_sc0010322.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017700 Rroxscaffold_1G00017710
rosa_rugosa	Rorug05G0352700 Rorug05G0352700 Rorug05G0352800 Rorug05G0352900
rosa_samantha	Rh5AG413800 Rh5AG413900 Rh5BG428000 Rh5BG428100 Rh5CG451600 Rh5CG451700 Rh5DG441700 Rh5DG441800
rosa_wichuraiana	Rw5G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	59
AcsI	RAATTY	2 cut(s)	207, 236
AcuI	CTGAAG	1 cut(s)	106
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgsI	TTSAA	2 cut(s)	82, 236
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
AoxI	GGCC	1 cut(s)	53
ApoI	RAATTY	2 cut(s)	207, 236
AspS9I	GGNCC	1 cut(s)	201
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	2 cut(s)	100, 108
AvaII	GGWCC	1 cut(s)	201
BbvCI	CCTCAGC	1 cut(s)	167
BcnI	CCSGG	1 cut(s)	186
Bme1390I	CCNGG	1 cut(s)	186
Bme18I	GGWCC	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	1 cut(s)	203
BmrFI	CCNGG	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse118I	RCCGGY	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	181
BshFI	GGCC	1 cut(s)	55
BsiSI	CCGG	2 cut(s)	56, 186
BslFI	GGGAC	2 cut(s)	147, 187
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmFI	GGGAC	2 cut(s)	147, 187
BsnI	GGCC	1 cut(s)	55
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	55
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	184
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	45
BstAPI	GCANNNNNTGC	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	167
BstEII	GGTNACC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 186
BstPI	GGTNACC	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	57
Cfr10I	RCCGGY	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	201
CseI	GACGC	1 cut(s)	146
CviJI	RGCY	2 cut(s)	55, 229
CviKI_1	RGCY	2 cut(s)	55, 229
DdeI	CTNAG	1 cut(s)	167
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
EciI	GGCGGA	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	106
Eco91I	GGTNACC	1 cut(s)	106
EcoO109I	RGGNCCY	1 cut(s)	201
EcoO65I	GGTNACC	1 cut(s)	106
FaiI	YATR	1 cut(s)	222
FaqI	GGGAC	2 cut(s)	147, 187
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	2 cut(s)	56, 186
HgaI	GACGC	1 cut(s)	146
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	2 cut(s)	23, 126
HpaII	CCGG	2 cut(s)	56, 186
HphI	GGTGA	2 cut(s)	100, 108
Hpy188I	TCNGA	3 cut(s)	22, 45, 125
Hpy188III	TCNNGA	1 cut(s)	204
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	2 cut(s)	88, 130
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4V	TGCA	4 cut(s)	87, 100, 180, 224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 186
HpyF3I	CTNAG	1 cut(s)	167
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
LpnPI	CCDG	3 cut(s)	69, 184, 199
MaeIII	GTNAC	1 cut(s)	106
MboII	GAAGA	3 cut(s)	16, 32, 74
MfeI	CAATTG	3 cut(s)	82, 95, 101
MluCI	AATT	6 cut(s)	82, 95, 101, 207, 236, 254
MlyI	GAGTC	2 cut(s)	32, 120
MnlI	CCTC	4 cut(s)	45, 48, 142, 176
MroNI	GCCGGC	1 cut(s)	55
MspI	CCGG	2 cut(s)	56, 186
MspR9I	CCNGG	1 cut(s)	186
MunI	CAATTG	3 cut(s)	82, 95, 101
MwoI	GCNNNNNNNGC	2 cut(s)	177, 186
NaeI	GCCGGC	1 cut(s)	57
NciI	CCSGG	1 cut(s)	186
NgoMIV	GCCGGC	1 cut(s)	55
NlaIV	GGNNCC	1 cut(s)	203
NmuCI	GTSAC	1 cut(s)	106
PdiI	GCCGGC	1 cut(s)	57
PleI	GAGTC	2 cut(s)	31, 120
PpsI	GAGTC	2 cut(s)	31, 120
PpuMI	RGGWCCY	1 cut(s)	201
Psp5II	RGGWCCY	1 cut(s)	201
PspEI	GGTNACC	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	203
PspPI	GGNCC	1 cut(s)	201
PspPPI	RGGWCCY	1 cut(s)	201
Sau96I	GGNCC	1 cut(s)	201
SchI	GAGTC	2 cut(s)	32, 120
ScrFI	CCNGG	1 cut(s)	186
SetI	ASST	2 cut(s)	203, 231
SgeI	CNNG	6 cut(s)	68, 143, 197, 198, 211, 216
SinI	GGWCC	1 cut(s)	201
Sse9I	AATT	6 cut(s)	82, 95, 101, 207, 236, 254
SsiI	CCGC	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	34
TaqI	TCGA	1 cut(s)	195
TasI	AATT	6 cut(s)	82, 95, 101, 207, 236, 254
TseFI	GTSAC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	201
XapI	RAATTY	2 cut(s)	207, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.