Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010322.1

Orthogroup ID

OG0002318

Physical Location & Seq

Genomic Coordinates Reverse (-)

7047 .. 7403

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010322.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

atgaacacacccaaatcatcatcgccggagccaattccactgatgacggtgactccggcaaaggaagaagaccaacccagaagctctaggcaactgcaattggtcactgcttcgcgctttggactcccagatggttggtctgttgaggaaaggccccgtcgctccagccaaacaggtttgactggtattgaaaagttgtctgggattttaagagtgaaaattggtccatataatttatccctgaaagttcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0008327 GO:0009628 GO:0009893 GO:0010369 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0098687 GO:1901265 GO:1901363 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

84

Amino Acids

9.28

Weight (kDa)

9.98

Isoelectric Point (pI)

74.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59800
fragaria_vesca	FvH4_3g35002 FvH4_3g35002 FvH4_3g35010
malus_domestica	MD03G1099400.v1.1 MD03G1099500.v1.1 MD11G1113700.v1.1
prunus_persica	Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084300_v2.0.a1 Prupe.6G084500_v2.0.a1
pyrus_communis	pycom03g08180 pycom03g08190 pycom11g09570
rosa_chinensis	RchiOBHm_Chr5g0062921 RchiOBHm_Chr5g0062931
rosa_laevigata	RLG00000009507 RLG00000035590 RLG00000035591
rosa_multiflora	Rmu_co7996734.1_g000001 Rmu_sc0000192.1_g000027 Rmu_sc0001738.1_g000035 Rmu_sc0003303.1_g000011 Rmu_sc0006171.1_g000008 Rmu_sc0010322.1_g000002 Rmu_sc0010322.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017700 Rroxscaffold_1G00017710
rosa_rugosa	Rorug05G0352700 Rorug05G0352700 Rorug05G0352800 Rorug05G0352900
rosa_samantha	Rh5AG413800 Rh5AG413900 Rh5BG428000 Rh5BG428100 Rh5CG451600 Rh5CG451700 Rh5DG441700 Rh5DG441800
rosa_wichuraiana	Rw5G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	191
AluBI	AGCT	1 cut(s)	84
AluI	AGCT	1 cut(s)	84
AoxI	GGCC	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	2 cut(s)	153, 224
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	75
BccI	CCATC	1 cut(s)	125
BfaI	CTAG	2 cut(s)	87, 253
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	2 cut(s)	153, 224
BmiI	GGNNCC	2 cut(s)	30, 155
BpiI	GAAGAC	1 cut(s)	75
BpmI	CTGGAG	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bse1I	ACTGG	1 cut(s)	187
BseNI	ACTGG	1 cut(s)	187
Bsh1236I	CGCG	1 cut(s)	115
BshFI	GGCC	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	26, 56
BsnI	GGCC	1 cut(s)	154
BspANI	GGCC	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	30, 155
BsrI	ACTGG	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	49
BstFNI	CGCG	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	117
BstUI	CGCG	1 cut(s)	115
BstV2I	GAAGAC	1 cut(s)	75
BstXI	CCANNNNNNTGG	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	154
BtgZI	GCGATG	1 cut(s)	6
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	38, 105
CfoI	GCGC	1 cut(s)	117
Cfr13I	GGNCC	2 cut(s)	153, 224
CviJI	RGCY	4 cut(s)	31, 84, 154, 168
CviKI_1	RGCY	4 cut(s)	31, 84, 154, 168
Eco47I	GGWCC	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	153
FaiI	YATR	2 cut(s)	229, 231
FspBI	CTAG	2 cut(s)	87, 253
GlaI	GCGC	1 cut(s)	116
GsuI	CTGGAG	1 cut(s)	148
HaeIII	GGCC	1 cut(s)	154
HapII	CCGG	2 cut(s)	26, 56
HhaI	GCGC	1 cut(s)	117
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HinfI	GANTC	2 cut(s)	52, 123
HpaII	CCGG	2 cut(s)	26, 56
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	250
Hpy8I	GTNNAC	1 cut(s)	250
Hpy99I	CGWCG	1 cut(s)	162
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	97
HspAI	GCGC	1 cut(s)	115
LmnI	GCTCC	2 cut(s)	28, 167
LpnPI	CCDG	8 cut(s)	39, 69, 91, 141, 159, 168, 178, 186
MaeI	CTAG	2 cut(s)	87, 253
MaeIII	GTNAC	2 cut(s)	49, 103
MboII	GAAGA	2 cut(s)	77, 80
MfeI	CAATTG	1 cut(s)	98
MluCI	AATT	4 cut(s)	33, 98, 219, 232
MlyI	GAGTC	2 cut(s)	46, 117
MnlI	CCTC	1 cut(s)	139
MseI	TTAA	1 cut(s)	209
MspI	CCGG	2 cut(s)	26, 56
MunI	CAATTG	1 cut(s)	98
MvnI	CGCG	1 cut(s)	115
NlaIV	GGNNCC	2 cut(s)	30, 155
NmuCI	GTSAC	2 cut(s)	49, 103
PleI	GAGTC	2 cut(s)	46, 117
PpsI	GAGTC	2 cut(s)	46, 117
PspN4I	GGNNCC	2 cut(s)	30, 155
PspPI	GGNCC	2 cut(s)	153, 224
SaqAI	TTAA	1 cut(s)	209
Sau96I	GGNCC	2 cut(s)	153, 224
SchI	GAGTC	2 cut(s)	46, 117
SetI	ASST	2 cut(s)	86, 178
SinI	GGWCC	1 cut(s)	224
Sse9I	AATT	4 cut(s)	33, 98, 219, 232
SspMI	CTAG	2 cut(s)	87, 253
TaaI	ACNGT	1 cut(s)	49
TasI	AATT	4 cut(s)	33, 98, 219, 232
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TscAI	CASTG	2 cut(s)	45, 112
TseFI	GTSAC	2 cut(s)	49, 103
Tsp45I	GTSAC	2 cut(s)	49, 103
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	45, 112
VpaK11BI	GGWCC	1 cut(s)	224
XspI	CTAG	2 cut(s)	87, 253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.