Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002318

Physical Location & Seq

Genomic Coordinates Forward (+)

6582953 .. 6585785

Gene Structure 2833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g08190.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGATGAAGGGGGAATCGTCACAGTCGGAGCCGATTCCGCTGCTAACAATGAGGCCAGGGGAAGAAGGAGAAGAACCCAGAAGCAGTGGCAGCAAAAGGCAATTGCAATTGGTCACGCCCTCACGGTCATTCAAACTTCCCGATGGTTGGCTGTTCGAGGAAAGGCCCCGTCCTCCAAGCTCTTCCCGCCCGGGCCATACCCAAATCGACAAGTATTACTATGAGCCTGGCACGGGACTGAAGTTTCGTTCACTGGCAGCTGTTCAGAGATACCTAACAGAAGGGCAAATCGAACAACATATCAGAAGATCAAAACCAGGCAATGAGTGTACTGTGCTGATTACACCACGCACCAGGAGGACCAGTTCATCCTTTGTACTACCTGATGGTTGGGAAGTTGAGGAGAAGCCACGGAGCAATATTAATTATTCTGGTTACGTAGACAGGTATTATATTGAGCCAGGGACTAGAAAGCGGTTCCGTTCTTTATTATCTGTTGAGAGGTACCTAACAGAAGCAAATGAAGATGCTCCACTCAAGGCATTGATGCCTGCCAACAAGTCTAGTCTTTCGCCTGGCTCTGGCTTTCAAAAGATGAACAATTTGGGCGAGATCCTGTCCAAGAAAGTTATTTCTGGTTCTGTGAAGAGAAATCTTTCGGGCGATTATGATACACCCTCCAATCCCAGCCCACCAGCAAAAGTTAATTGGGTCCTCGGCGGTCCTGGGGGGAATATGTGGAACGCCTTCATGGACGACTCTAAGGTCCCGGATTCTGTAAAGCAGAAGTGGTCCGAGACTTTTGTATCATCCGTCTCTGGTGAAAACGTGAGCGTACCAAGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0008327 GO:0009628 GO:0009893 GO:0010369 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0098687 GO:1901265 GO:1901363 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

283

Amino Acids

31.59

Weight (kDa)

9.45

Isoelectric Point (pI)

72.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59800
fragaria_vesca	FvH4_3g35002 FvH4_3g35002 FvH4_3g35010
malus_domestica	MD03G1099400.v1.1 MD03G1099500.v1.1 MD11G1113700.v1.1
prunus_persica	Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084300_v2.0.a1 Prupe.6G084500_v2.0.a1
pyrus_communis	pycom03g08180 pycom03g08190 pycom11g09570
rosa_chinensis	RchiOBHm_Chr5g0062921 RchiOBHm_Chr5g0062931
rosa_laevigata	RLG00000009507 RLG00000035590 RLG00000035591
rosa_multiflora	Rmu_co7996734.1_g000001 Rmu_sc0000192.1_g000027 Rmu_sc0001738.1_g000035 Rmu_sc0003303.1_g000011 Rmu_sc0006171.1_g000008 Rmu_sc0010322.1_g000002 Rmu_sc0010322.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017700 Rroxscaffold_1G00017710
rosa_rugosa	Rorug05G0352700 Rorug05G0352700 Rorug05G0352800 Rorug05G0352900
rosa_samantha	Rh5AG413800 Rh5AG413900 Rh5BG428000 Rh5BG428100 Rh5CG451600 Rh5CG451700 Rh5DG441700 Rh5DG441800
rosa_wichuraiana	Rw5G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	764
Acc65I	GGTACC	1 cut(s)	504
AccB1I	GGYRCC	1 cut(s)	504
AccI	GTMKAC	1 cut(s)	441
AciI	CCGC	4 cut(s)	38, 187, 475, 720
AclWI	GGATC	1 cut(s)	607
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	4 cut(s)	331, 378, 506, 837
AfiI	CCNNNNNNNGG	3 cut(s)	147, 233, 581
AgsI	TTSAA	2 cut(s)	133, 590
AjnI	CCWGG	7 cut(s)	55, 226, 316, 353, 460, 574, 724
AloI	GAACNNNNNNTCC	2 cut(s)	349, 381
AluBI	AGCT	2 cut(s)	180, 260
AluI	AGCT	2 cut(s)	180, 260
Alw26I	GTCTC	2 cut(s)	791, 820
AlwI	GGATC	1 cut(s)	607
Ama87I	CYCGRG	1 cut(s)	190
AoxI	GGCC	3 cut(s)	53, 164, 193
ApeKI	GCWGC	3 cut(s)	40, 90, 257
ArsI	GACNNNNNNTTYG	2 cut(s)	228, 260
AseI	ATTAAT	1 cut(s)	423
Asp700I	GAANNNNTTC	2 cut(s)	655, 746
Asp718I	GGTACC	1 cut(s)	504
AspS9I	GGNCC	7 cut(s)	165, 193, 360, 712, 722, 766, 792
AsuC2I	CCSGG	3 cut(s)	191, 192, 770
AsuHPI	GGTGA	1 cut(s)	833
AvaI	CYCGRG	1 cut(s)	190
AvaII	GGWCC	5 cut(s)	360, 712, 722, 766, 792
BaeI	ACNNNNGTAYC	2 cut(s)	789, 822
BanI	GGYRCC	1 cut(s)	504
BbvI	GCAGC	3 cut(s)	27, 102, 269
BccI	CCATC	2 cut(s)	137, 380
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BciT130I	CCWGG	7 cut(s)	57, 228, 318, 355, 462, 576, 726
BcnI	CCSGG	3 cut(s)	191, 192, 770
BcoDI	GTCTC	2 cut(s)	791, 820
BfaI	CTAG	2 cut(s)	468, 564
BisI	GCNGC	3 cut(s)	41, 91, 258
BlsI	GCNGC	3 cut(s)	42, 92, 259
Bme18I	GGWCC	5 cut(s)	360, 712, 722, 766, 792
BmeT110I	CYCGRG	1 cut(s)	190
BmgT120I	GGNCC	7 cut(s)	165, 193, 360, 712, 722, 766, 792
BmiI	GGNNCC	6 cut(s)	30, 167, 479, 506, 713, 768
BmsI	GCATC	2 cut(s)	517, 537
BpuEI	CTTGAG	1 cut(s)	521
BpuMI	CCSGG	3 cut(s)	191, 192, 770
BsaAI	YACGTR	1 cut(s)	439
BsaJI	CCNNGG	7 cut(s)	56, 190, 410, 461, 715, 725, 839
BsaXI	ACNNNNNCTCC	2 cut(s)	349, 379
Bsc4I	CCNNNNNNNGG	3 cut(s)	147, 233, 581
Bse1I	ACTGG	2 cut(s)	258, 363
Bse3DI	GCAATG	1 cut(s)	328
BseBI	CCWGG	7 cut(s)	57, 228, 318, 355, 462, 576, 726
BseDI	CCNNGG	7 cut(s)	56, 190, 410, 461, 715, 725, 839
BseGI	GGATG	2 cut(s)	368, 809
BseLI	CCNNNNNNNGG	3 cut(s)	147, 233, 581
BseMI	GCAATG	1 cut(s)	328
BseNI	ACTGG	2 cut(s)	258, 363
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	3 cut(s)	27, 102, 269
BseYI	CCCAGC	1 cut(s)	686
BshFI	GGCC	3 cut(s)	55, 166, 195
BshNI	GGYRCC	1 cut(s)	504
BsiHKCI	CYCGRG	1 cut(s)	190
BsiSI	CCGG	2 cut(s)	191, 770
BslFI	GGGAC	3 cut(s)	249, 478, 752
BslI	CCNNNNNNNGG	3 cut(s)	147, 233, 581
BsmAI	GTCTC	2 cut(s)	791, 820
BsmBI	CGTCTC	1 cut(s)	820
BsmFI	GGGAC	3 cut(s)	249, 478, 752
BsnI	GGCC	3 cut(s)	55, 166, 195
BsoBI	CYCGRG	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	308, 612
BspACI	CCGC	4 cut(s)	38, 187, 475, 720
BspANI	GGCC	3 cut(s)	55, 166, 195
BspLI	GGNNCC	6 cut(s)	30, 167, 479, 506, 713, 768
BspPI	GGATC	1 cut(s)	607
BspQI	GCTCTTC	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	504
BsrDI	GCAATG	1 cut(s)	328
BsrI	ACTGG	2 cut(s)	258, 363
BssECI	CCNNGG	7 cut(s)	56, 190, 410, 461, 715, 725, 839
BssMI	GATC	2 cut(s)	308, 612
BssT1I	CCWWGG	1 cut(s)	839
Bst2UI	CCWGG	7 cut(s)	57, 228, 318, 355, 462, 576, 726
Bst4CI	ACNGT	3 cut(s)	24, 126, 334
Bst6I	CTCTTC	2 cut(s)	187, 641
BstBAI	YACGTR	1 cut(s)	439
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	1 cut(s)	762
BstDSI	CCRYGG	1 cut(s)	410
BstF5I	GGATG	2 cut(s)	368, 809
BstKTI	GATC	2 cut(s)	311, 615
BstMAI	GTCTC	2 cut(s)	791, 820
BstMBI	GATC	2 cut(s)	308, 612
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 90, 186
BstNI	CCWGG	7 cut(s)	57, 228, 318, 355, 462, 576, 726
BstSNI	TACGTA	1 cut(s)	439
BstV1I	GCAGC	3 cut(s)	27, 102, 269
BstX2I	RGATCY	1 cut(s)	612
BstYI	RGATCY	1 cut(s)	612
BsuRI	GGCC	3 cut(s)	55, 166, 195
BtgI	CCRYGG	1 cut(s)	410
BtsCI	GGATG	2 cut(s)	368, 809
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	2 cut(s)	91, 251
Cac8I	GCNNGC	1 cut(s)	552
Cfr13I	GGNCC	7 cut(s)	165, 193, 360, 712, 722, 766, 792
Cfr9I	CCCGGG	1 cut(s)	190
Csp6I	GTAC	4 cut(s)	330, 377, 505, 836
CviAII	CATG	1 cut(s)	751
CviQI	GTAC	4 cut(s)	330, 377, 505, 836
DdeI	CTNAG	1 cut(s)	762
DpnI	GATC	2 cut(s)	310, 614
DpnII	GATC	2 cut(s)	308, 612
DrdI	GACNNNNNNGTC	1 cut(s)	764
DseDI	GACNNNNNNGTC	1 cut(s)	764
Eam1104I	CTCTTC	2 cut(s)	187, 641
EarI	CTCTTC	2 cut(s)	187, 641
Eco105I	TACGTA	1 cut(s)	439
Eco130I	CCWWGG	1 cut(s)	839
Eco47I	GGWCC	5 cut(s)	360, 712, 722, 766, 792
Eco57I	CTGAAG	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	190
EcoO109I	RGGNCCY	3 cut(s)	165, 712, 766
EcoRII	CCWGG	7 cut(s)	55, 226, 316, 353, 460, 574, 724
EcoT14I	CCWWGG	1 cut(s)	839
ErhI	CCWWGG	1 cut(s)	839
Esp3I	CGTCTC	1 cut(s)	820
FaeI	CATG	1 cut(s)	754
FaiI	YATR	7 cut(s)	198, 222, 300, 453, 669, 737, 752
FaqI	GGGAC	3 cut(s)	249, 478, 752
FatI	CATG	1 cut(s)	750
FauI	CCCGC	1 cut(s)	194
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	3 cut(s)	41, 91, 258
FokI	GGATG	2 cut(s)	355, 796
Fsp4HI	GCNGC	3 cut(s)	41, 91, 258
FspBI	CTAG	2 cut(s)	468, 564
GluI	GCNGC	3 cut(s)	41, 91, 258
GsaI	CCCAGC	1 cut(s)	690
HaeIII	GGCC	3 cut(s)	55, 166, 195
HapII	CCGG	2 cut(s)	191, 770
Hin1II	CATG	1 cut(s)	754
HinfI	GANTC	4 cut(s)	14, 34, 758, 773
HpaII	CCGG	2 cut(s)	191, 770
HphI	GGTGA	1 cut(s)	833
Hpy166II	GTNNAC	3 cut(s)	251, 330, 442
Hpy188I	TCNGA	4 cut(s)	28, 267, 305, 796
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	3 cut(s)	251, 330, 442
HpyAV	CCTTC	3 cut(s)	59, 275, 757
HpyCH4III	ACNGT	3 cut(s)	24, 126, 334
HpyCH4IV	ACGT	2 cut(s)	438, 828
HpyCH4V	TGCA	1 cut(s)	106
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 90, 186
HpyF3I	CTNAG	1 cut(s)	762
HpySE526I	ACGT	2 cut(s)	438, 828
Hsp92II	CATG	1 cut(s)	754
KpnI	GGTACC	1 cut(s)	508
Kzo9I	GATC	2 cut(s)	308, 612
LguI	GCTCTTC	1 cut(s)	187
LmnI	GCTCC	3 cut(s)	28, 414, 535
Lsp1109I	GCAGC	3 cut(s)	27, 102, 269
LweI	GCATC	2 cut(s)	517, 537
MaeI	CTAG	2 cut(s)	468, 564
MaeII	ACGT	2 cut(s)	438, 828
MaeIII	GTNAC	3 cut(s)	18, 112, 434
MalI	GATC	2 cut(s)	310, 614
MboI	GATC	2 cut(s)	308, 612
MboII	GAAGA	6 cut(s)	74, 83, 174, 318, 536, 658
MfeI	CAATTG	2 cut(s)	101, 107
MflI	RGATCY	1 cut(s)	612
MluCI	AATT	5 cut(s)	101, 107, 424, 601, 706
MlyI	GAGTC	1 cut(s)	752
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	9 cut(s)	45, 130, 151, 183, 351, 394, 495, 688, 725
MroXI	GAANNNNTTC	2 cut(s)	655, 746
MseI	TTAA	3 cut(s)	423, 705, 847
MspA1I	CMGCKG	2 cut(s)	40, 260
MspI	CCGG	2 cut(s)	191, 770
MunI	CAATTG	2 cut(s)	101, 107
MvaI	CCWGG	7 cut(s)	57, 228, 318, 355, 462, 576, 726
MwoI	GCNNNNNNNGC	3 cut(s)	37, 90, 186
NciI	CCSGG	3 cut(s)	191, 192, 770
NdeII	GATC	2 cut(s)	308, 612
NlaIII	CATG	1 cut(s)	754
NlaIV	GGNNCC	6 cut(s)	30, 167, 479, 506, 713, 768
NmeAIII	GCCGAG	1 cut(s)	696
NmuCI	GTSAC	2 cut(s)	18, 112
PciSI	GCTCTTC	1 cut(s)	187
PdmI	GAANNNNTTC	2 cut(s)	655, 746
PfeI	GAWTC	3 cut(s)	14, 34, 773
PfoI	TCCNGGA	1 cut(s)	768
PkrI	GCNGC	3 cut(s)	42, 92, 259
PleI	GAGTC	1 cut(s)	752
PpsI	GAGTC	1 cut(s)	752
Ppu21I	YACGTR	1 cut(s)	439
PpuMI	RGGWCCY	2 cut(s)	712, 766
PshBI	ATTAAT	1 cut(s)	423
Psp5II	RGGWCCY	2 cut(s)	712, 766
Psp6I	CCWGG	7 cut(s)	55, 226, 316, 353, 460, 574, 724
PspFI	CCCAGC	1 cut(s)	686
PspGI	CCWGG	7 cut(s)	55, 226, 316, 353, 460, 574, 724
PspN4I	GGNNCC	6 cut(s)	30, 167, 479, 506, 713, 768
PspPI	GGNCC	7 cut(s)	165, 193, 360, 712, 722, 766, 792
PspPPI	RGGWCCY	2 cut(s)	712, 766
PsuI	RGATCY	1 cut(s)	612
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	4 cut(s)	331, 378, 506, 837
RsaNI	GTAC	4 cut(s)	330, 377, 505, 836
SapI	GCTCTTC	1 cut(s)	187
SaqAI	TTAA	3 cut(s)	423, 705, 847
SatI	GCNGC	3 cut(s)	41, 91, 258
Sau3AI	GATC	2 cut(s)	308, 612
Sau96I	GGNCC	7 cut(s)	165, 193, 360, 712, 722, 766, 792
SchI	GAGTC	1 cut(s)	752
SfaNI	GCATC	2 cut(s)	517, 537
SinI	GGWCC	5 cut(s)	360, 712, 722, 766, 792
SmaI	CCCGGG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
SnaBI	TACGTA	1 cut(s)	439
SrfI	GCCCGGGC	1 cut(s)	192
Sse9I	AATT	5 cut(s)	101, 107, 424, 601, 706
SsiI	CCGC	4 cut(s)	38, 187, 475, 720
SspI	AATATT	1 cut(s)	421
SspMI	CTAG	2 cut(s)	468, 564
StyI	CCWWGG	1 cut(s)	839
TaaI	ACNGT	3 cut(s)	24, 126, 334
TaiI	ACGT	2 cut(s)	441, 831
TaqI	TCGA	3 cut(s)	156, 207, 291
TasI	AATT	5 cut(s)	101, 107, 424, 601, 706
TatI	WGTACW	2 cut(s)	329, 376
TfiI	GAWTC	3 cut(s)	14, 34, 773
Tru1I	TTAA	3 cut(s)	423, 705, 847
Tru9I	TTAA	3 cut(s)	423, 705, 847
TscAI	CASTG	2 cut(s)	91, 258
TseFI	GTSAC	2 cut(s)	18, 112
TseI	GCWGC	3 cut(s)	40, 90, 257
Tsp45I	GTSAC	2 cut(s)	18, 112
TspDTI	ATGAA	5 cut(s)	20, 357, 537, 611, 739
TspGWI	ACGGA	3 cut(s)	427, 470, 802
TspMI	CCCGGG	1 cut(s)	190
TspRI	CASTG	2 cut(s)	91, 258
VpaK11BI	GGWCC	5 cut(s)	360, 712, 722, 766, 792
VspI	ATTAAT	1 cut(s)	423
XmaI	CCCGGG	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	441
XmnI	GAANNNNTTC	2 cut(s)	655, 746
XspI	CTAG	2 cut(s)	468, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.