Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010322.1

Orthogroup ID

OG0002318

Physical Location & Seq

Genomic Coordinates Reverse (-)

10010 .. 12600

Gene Structure 2591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010322.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgaggtgtagttcttcctttgtactaccagatggttgggaaattgaggaaaagccacgaaagaatgctaatactggtcacagtgacaagtattatattgagccaggaactggaaggcggttccgttctttagtagctgttgagagatacctaacagaagaaaatgaacacactccacttcaggcattgatacctgccaataagttgattctttcgagtggatccagcagccagaagaaaaagattcggtccctgaaatttgtttctaagaattcatcacattcaaactctgcagagcattttagtagtcccaagaaagaaatactcccagaaatcagtagaccttcgcagctcaatattagcagcgcaccaacaaaagttaaatgggtcctcgttggtcctggggctaataaatggaaccccttcatggatgattctagagttgccgattctgtaaagcaaaagtggtctgagattttcaaatcatccatctatgacgaaaacattaaggcaccgtgtttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0008327 GO:0009628 GO:0009893 GO:0010369 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0098687 GO:1901265 GO:1901363 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

174

Amino Acids

19.64

Weight (kDa)

9.52

Isoelectric Point (pI)

67.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59800
fragaria_vesca	FvH4_3g35002 FvH4_3g35002 FvH4_3g35010
malus_domestica	MD03G1099400.v1.1 MD03G1099500.v1.1 MD11G1113700.v1.1
prunus_persica	Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084300_v2.0.a1 Prupe.6G084500_v2.0.a1
pyrus_communis	pycom03g08180 pycom03g08190 pycom11g09570
rosa_chinensis	RchiOBHm_Chr5g0062921 RchiOBHm_Chr5g0062931
rosa_laevigata	RLG00000009507 RLG00000035590 RLG00000035591
rosa_multiflora	Rmu_co7996734.1_g000001 Rmu_sc0000192.1_g000027 Rmu_sc0001738.1_g000035 Rmu_sc0003303.1_g000011 Rmu_sc0006171.1_g000008 Rmu_sc0010322.1_g000002 Rmu_sc0010322.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017700 Rroxscaffold_1G00017710
rosa_rugosa	Rorug05G0352700 Rorug05G0352700 Rorug05G0352800 Rorug05G0352900
rosa_samantha	Rh5AG413800 Rh5AG413900 Rh5BG428000 Rh5BG428100 Rh5CG451600 Rh5CG451700 Rh5DG441700 Rh5DG441800
rosa_wichuraiana	Rw5G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	202
AccB1I	GGYRCC	1 cut(s)	511
AccB7I	CCANNNNNTGG	1 cut(s)	110
AccI	GTMKAC	1 cut(s)	340
AciI	CCGC	1 cut(s)	118
AclWI	GGATC	2 cut(s)	216, 229
AcsI	RAATTY	2 cut(s)	257, 271
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	1 cut(s)	24
AfiI	CCNNNNNNNGG	2 cut(s)	110, 427
AgsI	TTSAA	2 cut(s)	285, 481
AjnI	CCWGG	2 cut(s)	103, 400
AluBI	AGCT	2 cut(s)	137, 352
AluI	AGCT	2 cut(s)	137, 352
AlwI	GGATC	2 cut(s)	216, 229
AlwNI	CAGNNNCTG	1 cut(s)	110
ApeKI	GCWGC	3 cut(s)	228, 349, 363
ApoI	RAATTY	2 cut(s)	257, 271
Asp700I	GAANNNNTTC	1 cut(s)	422
AspLEI	GCGC	1 cut(s)	368
AspS9I	GGNCC	3 cut(s)	249, 388, 398
AvaII	GGWCC	3 cut(s)	249, 388, 398
BamHI	GGATCC	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	511
BbvI	GCAGC	3 cut(s)	240, 361, 375
BccI	CCATC	2 cut(s)	26, 497
BciT130I	CCWGG	2 cut(s)	105, 402
BfaI	CTAG	1 cut(s)	438
BfmI	CTRYAG	1 cut(s)	291
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	3 cut(s)	229, 350, 364
BlsI	GCNGC	3 cut(s)	230, 351, 365
Bme1390I	CCNGG	2 cut(s)	105, 402
Bme18I	GGWCC	3 cut(s)	249, 388, 398
BmgT120I	GGNCC	3 cut(s)	249, 388, 398
BmiI	GGNNCC	6 cut(s)	122, 223, 251, 389, 419, 513
BmrFI	CCNGG	2 cut(s)	105, 402
BsaJI	CCNNGG	1 cut(s)	401
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 427
Bse1I	ACTGG	2 cut(s)	79, 115
BseBI	CCWGG	2 cut(s)	105, 402
BseDI	CCNNGG	1 cut(s)	401
BseGI	GGATG	2 cut(s)	436, 485
BseLI	CCNNNNNNNGG	2 cut(s)	110, 427
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	2 cut(s)	79, 115
BseXI	GCAGC	3 cut(s)	240, 361, 375
BshNI	GGYRCC	1 cut(s)	511
BslFI	GGGAC	2 cut(s)	235, 294
BslI	CCNNNNNNNGG	2 cut(s)	110, 427
BsmFI	GGGAC	2 cut(s)	235, 294
BsmI	GAATGC	1 cut(s)	70
Bsp143I	GATC	1 cut(s)	221
BspACI	CCGC	1 cut(s)	118
BspCNI	CTCAG	1 cut(s)	463
BspLI	GGNNCC	6 cut(s)	122, 223, 251, 389, 419, 513
BspMAI	CTGCAG	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	2 cut(s)	216, 229
BspT107I	GGYRCC	1 cut(s)	511
BsrI	ACTGG	2 cut(s)	79, 115
BssECI	CCNNGG	1 cut(s)	401
BssMI	GATC	1 cut(s)	221
Bst2UI	CCWGG	2 cut(s)	105, 402
Bst4CI	ACNGT	2 cut(s)	83, 516
BstDEI	CTNAG	2 cut(s)	267, 471
BstF5I	GGATG	2 cut(s)	436, 485
BstHHI	GCGC	1 cut(s)	368
BstKTI	GATC	1 cut(s)	224
BstMBI	GATC	1 cut(s)	221
BstNI	CCWGG	2 cut(s)	105, 402
BstSCI	CCNGG	2 cut(s)	103, 400
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	3 cut(s)	240, 361, 375
BstX2I	RGATCY	1 cut(s)	221
BstXI	CCANNNNNNTGG	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	221
BtsCI	GGATG	2 cut(s)	436, 485
BtsIMutI	CAGTG	1 cut(s)	88
BveI	ACCTGC	1 cut(s)	202
CaiI	CAGNNNCTG	1 cut(s)	110
CfoI	GCGC	1 cut(s)	368
Cfr13I	GGNCC	3 cut(s)	249, 388, 398
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	1 cut(s)	427
CviJI	RGCY	6 cut(s)	55, 103, 137, 231, 352, 407
CviKI_1	RGCY	6 cut(s)	55, 103, 137, 231, 352, 407
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	2 cut(s)	267, 471
DpnI	GATC	1 cut(s)	223
DpnII	GATC	1 cut(s)	221
Eco47I	GGWCC	3 cut(s)	249, 388, 398
Eco57I	CTGAAG	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRI	GAATTC	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	103, 400
FaeI	CATG	1 cut(s)	430
FaiI	YATR	3 cut(s)	96, 428, 495
FaqI	GGGAC	2 cut(s)	235, 294
FatI	CATG	1 cut(s)	426
FblI	GTMKAC	1 cut(s)	340
Fnu4HI	GCNGC	3 cut(s)	229, 350, 364
FokI	GGATG	2 cut(s)	443, 472
Fsp4HI	GCNGC	3 cut(s)	229, 350, 364
FspBI	CTAG	1 cut(s)	438
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	3 cut(s)	229, 350, 364
HhaI	GCGC	1 cut(s)	368
Hin1II	CATG	1 cut(s)	430
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HinfI	GANTC	4 cut(s)	208, 244, 434, 449
Hpy166II	GTNNAC	1 cut(s)	341
Hpy188I	TCNGA	1 cut(s)	472
Hpy188III	TCNNGA	1 cut(s)	438
Hpy8I	GTNNAC	1 cut(s)	341
HpyAV	CCTTC	3 cut(s)	108, 354, 433
HpyCH4III	ACNGT	2 cut(s)	83, 516
HpyCH4V	TGCA	1 cut(s)	293
HpyF3I	CTNAG	2 cut(s)	267, 471
Hsp92II	CATG	1 cut(s)	430
HspAI	GCGC	1 cut(s)	366
Kzo9I	GATC	1 cut(s)	221
Lsp1109I	GCAGC	3 cut(s)	240, 361, 375
MaeI	CTAG	1 cut(s)	438
MaeIII	GTNAC	2 cut(s)	77, 83
MalI	GATC	1 cut(s)	223
MboI	GATC	1 cut(s)	221
MboII	GAAGA	3 cut(s)	6, 170, 247
MflI	RGATCY	1 cut(s)	221
MluCI	AATT	3 cut(s)	42, 257, 271
MnlI	CCTC	2 cut(s)	40, 401
MroXI	GAANNNNTTC	1 cut(s)	422
MseI	TTAA	2 cut(s)	381, 507
MspR9I	CCNGG	2 cut(s)	105, 402
Mva1269I	GAATGC	1 cut(s)	70
MvaI	CCWGG	2 cut(s)	105, 402
NdeII	GATC	1 cut(s)	221
NlaIII	CATG	1 cut(s)	430
NlaIV	GGNNCC	6 cut(s)	122, 223, 251, 389, 419, 513
NmuCI	GTSAC	2 cut(s)	77, 83
PctI	GAATGC	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	422
PfeI	GAWTC	4 cut(s)	208, 244, 434, 449
PflMI	CCANNNNNTGG	1 cut(s)	110
PkrI	GCNGC	3 cut(s)	230, 351, 365
PpuMI	RGGWCCY	1 cut(s)	388
Psp5II	RGGWCCY	1 cut(s)	388
Psp6I	CCWGG	2 cut(s)	103, 400
PspGI	CCWGG	2 cut(s)	103, 400
PspN4I	GGNNCC	6 cut(s)	122, 223, 251, 389, 419, 513
PspPI	GGNCC	3 cut(s)	249, 388, 398
PspPPI	RGGWCCY	1 cut(s)	388
PstI	CTGCAG	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	221
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	381, 507
SatI	GCNGC	3 cut(s)	229, 350, 364
Sau3AI	GATC	1 cut(s)	221
Sau96I	GGNCC	3 cut(s)	249, 388, 398
ScrFI	CCNGG	2 cut(s)	105, 402
SetI	ASST	6 cut(s)	8, 139, 153, 196, 346, 354
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	3 cut(s)	249, 388, 398
Sse9I	AATT	3 cut(s)	42, 257, 271
SsiI	CCGC	1 cut(s)	118
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	1 cut(s)	438
StyD4I	CCNGG	2 cut(s)	103, 400
TaaI	ACNGT	2 cut(s)	83, 516
TaqI	TCGA	1 cut(s)	215
TaqII	GACCGA	1 cut(s)	237
TasI	AATT	3 cut(s)	42, 257, 271
TatI	WGTACW	1 cut(s)	22
TfiI	GAWTC	4 cut(s)	208, 244, 434, 449
Tru1I	TTAA	2 cut(s)	381, 507
Tru9I	TTAA	2 cut(s)	381, 507
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	2 cut(s)	77, 83
TseI	GCWGC	3 cut(s)	228, 349, 363
Tsp45I	GTSAC	2 cut(s)	77, 83
TspDTI	ATGAA	3 cut(s)	180, 264, 415
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	88
Van91I	CCANNNNNTGG	1 cut(s)	110
VpaK11BI	GGWCC	3 cut(s)	249, 388, 398
XapI	RAATTY	2 cut(s)	257, 271
XbaI	TCTAGA	1 cut(s)	437
XmiI	GTMKAC	1 cut(s)	340
XmnI	GAANNNNTTC	1 cut(s)	422
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.