Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002318

Physical Location & Seq

Genomic Coordinates Reverse (-)

30226747 .. 30230289

Gene Structure 3543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g35010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAAGAGGAGAAGACGATCATCAGCGCCGGAGCCACTTCCGCTTCAGGCAGTGACGCCGGTGAAAGAAGAAGAAAAAGACGACCCCGGAAAGAACTGGCAATTAGTGACGGCTGCTTCTGCTTCGGTGCGCTTCGGACTCCCCGACGGTTGGTGTGTTCAGGAAATCCCCCGTTGCTCTACCAGCTTCTGTCCCCAACGAGTTGACAGGTATTTCATTGAGCCTGACACGGGACAGAAGTTTCGTTCGCTGGTAGCTGTTCGCAGATACCTAACAGGTGGACAAGTTGCTAGACAAGCAACTGCTGATAAACAAGTAACTGTGGATAAACAAGCAACTGTGGATAAACGAGCAACTATGCAAATTACACCACACACCACGAGGTGTAGTCCTTCCTTCGGACTACCAGATGGTTGGAAAATTGAGAAAAAGCCACGAATTAATACTACATATAGTGACAGTGATAAGTATTATATTGAGCCAGGAACTGGAAGGCGGTTCCGGTCTTTAGTAGCTGTTGAGAGATACCTAGCAGAAGAAAATGAACATACTCCACTTCAGGCATTGATACCTGCCAATAAGTTGACTGTTTCGAGTGGATCCAGCGGCCAGAAGAAAAAGATTCAGTCCCGAAAAATTGTTTCTAAGAATTCATCACATTCGAACGATTGCAATAGCACACTCAATGCATCAAGGCTGAACACTTATTCTTCACCTGCAGAGCATTTTAGTTCTCCCCAGAAAGAATTTCCCCGAGAAAACAGTAGAACTTTGCATCTCAATAGTAGCAGCCAACCAACAATTAAATGGGTCCTGGTCGATCGTGGGGGAAATGAGTGGAACCCCTTCATGGATGATTCAATGGTAGCGGATTCTGTGAAGCAAAAGTGGTCTGAGATTTTCAAATCAACTATCTATGGCGAAAATATCAAGCCACCAATTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0008327 GO:0009628 GO:0009893 GO:0010369 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0098687 GO:1901265 GO:1901363 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

316

Amino Acids

35.55

Weight (kDa)

9.59

Isoelectric Point (pI)

53.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	135 - 184	1.2e-07	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59800
fragaria_vesca	FvH4_3g35002 FvH4_3g35002 FvH4_3g35010
malus_domestica	MD03G1099400.v1.1 MD03G1099500.v1.1 MD11G1113700.v1.1
prunus_persica	Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084300_v2.0.a1 Prupe.6G084500_v2.0.a1
pyrus_communis	pycom03g08180 pycom03g08190 pycom11g09570
rosa_chinensis	RchiOBHm_Chr5g0062921 RchiOBHm_Chr5g0062931
rosa_laevigata	RLG00000009507 RLG00000035590 RLG00000035591
rosa_multiflora	Rmu_co7996734.1_g000001 Rmu_sc0000192.1_g000027 Rmu_sc0001738.1_g000035 Rmu_sc0003303.1_g000011 Rmu_sc0006171.1_g000008 Rmu_sc0010322.1_g000002 Rmu_sc0010322.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017700 Rroxscaffold_1G00017710
rosa_rugosa	Rorug05G0352700 Rorug05G0352700 Rorug05G0352800 Rorug05G0352900
rosa_samantha	Rh5AG413800 Rh5AG413900 Rh5BG428000 Rh5BG428100 Rh5CG451600 Rh5CG451700 Rh5DG441700 Rh5DG441800
rosa_wichuraiana	Rw5G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	724
Acc36I	ACCTGC	2 cut(s)	580, 724
AccB7I	CCANNNNNTGG	1 cut(s)	488
AciI	CCGC	4 cut(s)	41, 496, 606, 869
AclWI	GGATC	2 cut(s)	594, 607
AcoI	YGGCCR	1 cut(s)	607
AcsI	RAATTY	2 cut(s)	649, 746
AcuI	CTGAAG	2 cut(s)	29, 542
AcyI	GRCGYC	1 cut(s)	56
AdeI	CACNNNGTG	1 cut(s)	384
AfiI	CCNNNNNNNGG	5 cut(s)	150, 230, 398, 488, 850
AgsI	TTSAA	2 cut(s)	861, 904
AjnI	CCWGG	2 cut(s)	481, 813
AluBI	AGCT	3 cut(s)	186, 257, 515
AluI	AGCT	3 cut(s)	186, 257, 515
AlwI	GGATC	2 cut(s)	594, 607
AlwNI	CAGNNNCTG	2 cut(s)	189, 488
Ama87I	CYCGRG	1 cut(s)	753
AoxI	GGCC	1 cut(s)	607
ApeKI	GCWGC	2 cut(s)	113, 789
ApoI	RAATTY	2 cut(s)	649, 746
ArsI	GACNNNNNNTTYG	2 cut(s)	225, 257
AseI	ATTAAT	1 cut(s)	441
Asp700I	GAANNNNTTC	1 cut(s)	845
AspLEI	GCGC	2 cut(s)	28, 132
AspS9I	GGNCC	1 cut(s)	811
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	2 cut(s)	73, 705
AsuII	TTCGAA	1 cut(s)	662
AvaI	CYCGRG	1 cut(s)	753
AvaII	GGWCC	1 cut(s)	811
BamHI	GGATCC	1 cut(s)	599
BauI	CACGAG	1 cut(s)	379
BbsI	GAAGAC	1 cut(s)	19
BbvI	GCAGC	2 cut(s)	100, 801
BccI	CCATC	1 cut(s)	404
BceAI	ACGGC	1 cut(s)	126
BciT130I	CCWGG	2 cut(s)	483, 815
BcnI	CCSGG	1 cut(s)	87
BfaI	CTAG	2 cut(s)	291, 530
BfmI	CTRYAG	1 cut(s)	717
BfoI	RGCGCY	1 cut(s)	29
BfuAI	ACCTGC	2 cut(s)	580, 724
BisI	GCNGC	3 cut(s)	114, 607, 790
BlsI	GCNGC	3 cut(s)	115, 608, 791
Bme1390I	CCNGG	3 cut(s)	87, 483, 815
Bme18I	GGWCC	1 cut(s)	811
BmeT110I	CYCGRG	1 cut(s)	753
BmgT120I	GGNCC	1 cut(s)	811
BmiI	GGNNCC	5 cut(s)	33, 500, 601, 812, 842
BmrFI	CCNGG	3 cut(s)	87, 483, 815
BmsI	GCATC	2 cut(s)	698, 784
BpiI	GAAGAC	1 cut(s)	19
Bpu14I	TTCGAA	1 cut(s)	662
BpuMI	CCSGG	1 cut(s)	87
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	85
BsaWI	WCCGGW	1 cut(s)	501
Bsc4I	CCNNNNNNNGG	5 cut(s)	150, 230, 398, 488, 850
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	2 cut(s)	101, 493
BseBI	CCWGG	2 cut(s)	483, 815
BseDI	CCNNGG	1 cut(s)	85
BseGI	GGATG	1 cut(s)	859
BseLI	CCNNNNNNNGG	5 cut(s)	150, 230, 398, 488, 850
BseMII	CTCAG	1 cut(s)	885
BseNI	ACTGG	2 cut(s)	101, 493
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	2 cut(s)	100, 801
Bsh1285I	CGRYCG	1 cut(s)	823
BshFI	GGCC	1 cut(s)	609
BsiEI	CGRYCG	1 cut(s)	823
BsiHKCI	CYCGRG	1 cut(s)	753
BsiSI	CCGG	4 cut(s)	29, 59, 87, 502
BslFI	GGGAC	3 cut(s)	177, 246, 613
BslI	CCNNNNNNNGG	5 cut(s)	150, 230, 398, 488, 850
BsmFI	GGGAC	3 cut(s)	177, 246, 613
BsnI	GGCC	1 cut(s)	609
BsoBI	CYCGRG	1 cut(s)	753
Bsp119I	TTCGAA	1 cut(s)	662
Bsp143I	GATC	3 cut(s)	17, 599, 820
BspACI	CCGC	4 cut(s)	41, 496, 606, 869
BspANI	GGCC	1 cut(s)	609
BspCNI	CTCAG	1 cut(s)	886
BspLI	GGNNCC	5 cut(s)	33, 500, 601, 812, 842
BspMAI	CTGCAG	1 cut(s)	721
BspMI	ACCTGC	2 cut(s)	580, 724
BspPI	GGATC	2 cut(s)	594, 607
BspT104I	TTCGAA	1 cut(s)	662
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	2 cut(s)	101, 493
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	3 cut(s)	17, 599, 820
BssNI	GRCGYC	1 cut(s)	56
BssSI	CACGAG	1 cut(s)	379
Bst2BI	CACGAG	1 cut(s)	379
Bst2UI	CCWGG	2 cut(s)	483, 815
Bst4CI	ACNGT	6 cut(s)	149, 322, 340, 461, 589, 764
BstACI	GRCGYC	1 cut(s)	56
BstBI	TTCGAA	1 cut(s)	662
BstDEI	CTNAG	2 cut(s)	645, 894
BstF5I	GGATG	1 cut(s)	859
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	2 cut(s)	28, 132
BstKTI	GATC	3 cut(s)	20, 602, 823
BstMBI	GATC	3 cut(s)	17, 599, 820
BstMCI	CGRYCG	1 cut(s)	823
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 119, 183, 296
BstNI	CCWGG	2 cut(s)	483, 815
BstSCI	CCNGG	3 cut(s)	85, 481, 813
BstSFI	CTRYAG	1 cut(s)	717
BstV1I	GCAGC	2 cut(s)	100, 801
BstV2I	GAAGAC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	599
BstXI	CCANNNNNNTGG	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	599
BsuRI	GGCC	1 cut(s)	609
BtsCI	GGATG	1 cut(s)	859
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	2 cut(s)	57, 466
BveI	ACCTGC	2 cut(s)	580, 724
CaiI	CAGNNNCTG	2 cut(s)	189, 488
CfoI	GCGC	2 cut(s)	28, 132
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	811
CseI	GACGC	1 cut(s)	64
CviAII	CATG	1 cut(s)	850
DdeI	CTNAG	2 cut(s)	645, 894
DpnI	GATC	3 cut(s)	19, 601, 822
DpnII	GATC	3 cut(s)	17, 599, 820
DraIII	CACNNNGTG	1 cut(s)	384
EaeI	YGGCCR	1 cut(s)	607
Eco47I	GGWCC	1 cut(s)	811
Eco57I	CTGAAG	2 cut(s)	29, 542
Eco88I	CYCGRG	1 cut(s)	753
EcoO109I	RGGNCCY	1 cut(s)	811
EcoRI	GAATTC	1 cut(s)	649
EcoRII	CCWGG	2 cut(s)	481, 813
EcoT22I	ATGCAT	1 cut(s)	691
FaeI	CATG	1 cut(s)	853
FaiI	YATR	7 cut(s)	359, 451, 453, 474, 549, 851, 918
FaqI	GGGAC	3 cut(s)	177, 246, 613
FatI	CATG	1 cut(s)	849
Fnu4HI	GCNGC	3 cut(s)	114, 607, 790
FokI	GGATG	1 cut(s)	866
Fsp4HI	GCNGC	3 cut(s)	114, 607, 790
FspBI	CTAG	2 cut(s)	291, 530
GlaI	GCGC	2 cut(s)	27, 131
GluI	GCNGC	3 cut(s)	114, 607, 790
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	609
HapII	CCGG	4 cut(s)	29, 59, 87, 502
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	2 cut(s)	28, 132
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	853
Hin6I	GCGC	2 cut(s)	26, 130
HinP1I	GCGC	2 cut(s)	26, 130
HincII	GTYRAC	2 cut(s)	205, 585
HindII	GTYRAC	2 cut(s)	205, 585
HinfI	GANTC	4 cut(s)	138, 622, 857, 872
HpaII	CCGG	4 cut(s)	29, 59, 87, 502
HphI	GGTGA	2 cut(s)	73, 705
Hpy166II	GTNNAC	3 cut(s)	205, 281, 585
Hpy188I	TCNGA	3 cut(s)	137, 401, 895
Hpy188III	TCNNGA	2 cut(s)	161, 630
Hpy8I	GTNNAC	3 cut(s)	205, 281, 585
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	4 cut(s)	402, 406, 486, 856
HpyCH4III	ACNGT	6 cut(s)	149, 322, 340, 461, 589, 764
HpyCH4V	TGCA	5 cut(s)	361, 672, 689, 719, 775
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 119, 183, 296
HpyF3I	CTNAG	2 cut(s)	645, 894
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	1 cut(s)	853
HspAI	GCGC	2 cut(s)	26, 130
Kzo9I	GATC	3 cut(s)	17, 599, 820
LmnI	GCTCC	1 cut(s)	31
Lsp1109I	GCAGC	2 cut(s)	100, 801
LweI	GCATC	2 cut(s)	698, 784
MaeI	CTAG	2 cut(s)	291, 530
MaeIII	GTNAC	4 cut(s)	52, 106, 316, 455
MalI	GATC	3 cut(s)	19, 601, 822
MboI	GATC	3 cut(s)	17, 599, 820
MboII	GAAGA	7 cut(s)	16, 24, 80, 83, 548, 625, 702
MflI	RGATCY	1 cut(s)	599
MluCI	AATT	9 cut(s)	101, 363, 420, 438, 636, 649, 746, 801, 939
MlyI	GAGTC	1 cut(s)	132
MmeI	TCCRAC	1 cut(s)	395
MnlI	CCTC	1 cut(s)	375
Mph1103I	ATGCAT	1 cut(s)	691
MroXI	GAANNNNTTC	1 cut(s)	845
MseI	TTAA	2 cut(s)	441, 804
MspA1I	CMGCKG	1 cut(s)	606
MspI	CCGG	4 cut(s)	29, 59, 87, 502
MspR9I	CCNGG	3 cut(s)	87, 483, 815
MvaI	CCWGG	2 cut(s)	483, 815
MwoI	GCNNNNNNNGC	4 cut(s)	40, 119, 183, 296
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	3 cut(s)	17, 599, 820
NlaIII	CATG	1 cut(s)	853
NlaIV	GGNNCC	5 cut(s)	33, 500, 601, 812, 842
NmuCI	GTSAC	3 cut(s)	52, 106, 455
NsiI	ATGCAT	1 cut(s)	691
NspV	TTCGAA	1 cut(s)	662
PaqCI	CACCTGC	1 cut(s)	724
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PdmI	GAANNNNTTC	1 cut(s)	845
PfeI	GAWTC	3 cut(s)	622, 857, 872
PflMI	CCANNNNNTGG	1 cut(s)	488
PkrI	GCNGC	3 cut(s)	115, 608, 791
Ple19I	CGATCG	1 cut(s)	823
PleI	GAGTC	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	132
PpuMI	RGGWCCY	1 cut(s)	811
PshBI	ATTAAT	1 cut(s)	441
Psp5II	RGGWCCY	1 cut(s)	811
Psp6I	CCWGG	2 cut(s)	481, 813
PspGI	CCWGG	2 cut(s)	481, 813
PspN4I	GGNNCC	5 cut(s)	33, 500, 601, 812, 842
PspPI	GGNCC	1 cut(s)	811
PspPPI	RGGWCCY	1 cut(s)	811
PstI	CTGCAG	1 cut(s)	721
PstNI	CAGNNNCTG	2 cut(s)	189, 488
PsuI	RGATCY	1 cut(s)	599
PvuI	CGATCG	1 cut(s)	823
SaqAI	TTAA	2 cut(s)	441, 804
SatI	GCNGC	3 cut(s)	114, 607, 790
Sau3AI	GATC	3 cut(s)	17, 599, 820
Sau96I	GGNCC	1 cut(s)	811
SchI	GAGTC	1 cut(s)	132
ScrFI	CCNGG	3 cut(s)	87, 483, 815
SfaNI	GCATC	2 cut(s)	698, 784
SfcI	CTRYAG	1 cut(s)	717
SfuI	TTCGAA	1 cut(s)	662
SgrAI	CRCCGGYG	1 cut(s)	58
SinI	GGWCC	1 cut(s)	811
Sse9I	AATT	9 cut(s)	101, 363, 420, 438, 636, 649, 746, 801, 939
SsiI	CCGC	4 cut(s)	41, 496, 606, 869
SspMI	CTAG	2 cut(s)	291, 530
StyD4I	CCNGG	3 cut(s)	85, 481, 813
TaaI	ACNGT	6 cut(s)	149, 322, 340, 461, 589, 764
TaqI	TCGA	3 cut(s)	593, 662, 819
TasI	AATT	9 cut(s)	101, 363, 420, 438, 636, 649, 746, 801, 939
TauI	GCSGC	1 cut(s)	609
TfiI	GAWTC	3 cut(s)	622, 857, 872
Tru1I	TTAA	2 cut(s)	441, 804
Tru9I	TTAA	2 cut(s)	441, 804
TscAI	CASTG	2 cut(s)	57, 466
TseFI	GTSAC	3 cut(s)	52, 106, 455
TseI	GCWGC	2 cut(s)	113, 789
Tsp45I	GTSAC	3 cut(s)	52, 106, 455
TspDTI	ATGAA	5 cut(s)	17, 205, 558, 642, 838
TspRI	CASTG	2 cut(s)	57, 466
Van91I	CCANNNNNTGG	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	811
VspI	ATTAAT	1 cut(s)	441
XapI	RAATTY	2 cut(s)	649, 746
XcmI	CCANNNNNNNNNTGG	1 cut(s)	804
XmnI	GAANNNNTTC	1 cut(s)	845
XspI	CTAG	2 cut(s)	291, 530
Zsp2I	ATGCAT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.