Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001738.1

Orthogroup ID

OG0002318

Physical Location & Seq

Genomic Coordinates Forward (+)

138948 .. 142766

Gene Structure 3819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001738.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atggcggtgatggcatccatgcttgaagacgacgtccccctccctcggcctcaccgcccgctctctccggccactagttcgacttaccacgatggtgccatctcccttctctctctcctccgcgctatatttctctctcctttctcctcctcgacggcgatctggtctttgcggtttcgagttcgtttccagtcctacaacgtcgcctcaaagccattaacggccacctcatctccaacgccgtgtcccgctccattctgcggccaaacgtcactactggagagtttgtttccagtcctctctctctccggcgagattctgaggagcatcgccaacctgattgagcttcagctcgtacaatcagttttctggtcaggttctggcgagctttggcgttggaccacgacctcttgcaactcatccccaaggtgcaccaatgggaatgtctgcactgtggtaccgcctgcgaagcattctagttctccgaagaaaaatatttatggggagaccagtagaccctcagagctcactaatggcagcccaccaacaaaagttaaatgggttctcgccggtcctgggggaaatatgtggaaccccttcatagatgtccctagggtctctgattctgtaaagcaaatgtggtctgagattttcaagtcatcaatctatgaggtctcaccacttggtgataaaatccaaaggcaagccatgaatcccgtctttcatagtggtgaaacatggaatgcccaagagagtgatggagggcagtcgttggatttgagtagatataagttgaaccagcttgaggagcaccagattacagcccagaccgatggtatctctactttccggctagcacccgatgtcaaacaggcgtcgttcgactcttctcggcatcgcaaaccagagcttggtcgtccctgctcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0008327 GO:0009628 GO:0009893 GO:0010369 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0098687 GO:1901265 GO:1901363 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

309

Amino Acids

33.97

Weight (kDa)

8.74

Isoelectric Point (pI)

63.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59800
fragaria_vesca	FvH4_3g35002 FvH4_3g35002 FvH4_3g35010
malus_domestica	MD03G1099400.v1.1 MD03G1099500.v1.1 MD11G1113700.v1.1
prunus_persica	Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084300_v2.0.a1 Prupe.6G084500_v2.0.a1
pyrus_communis	pycom03g08180 pycom03g08190 pycom11g09570
rosa_chinensis	RchiOBHm_Chr5g0062921 RchiOBHm_Chr5g0062931
rosa_laevigata	RLG00000009507 RLG00000035590 RLG00000035591
rosa_multiflora	Rmu_co7996734.1_g000001 Rmu_sc0000192.1_g000027 Rmu_sc0001738.1_g000035 Rmu_sc0003303.1_g000011 Rmu_sc0006171.1_g000008 Rmu_sc0010322.1_g000002 Rmu_sc0010322.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017700 Rroxscaffold_1G00017710
rosa_rugosa	Rorug05G0352700 Rorug05G0352700 Rorug05G0352800 Rorug05G0352900
rosa_samantha	Rh5AG413800 Rh5AG413900 Rh5BG428000 Rh5BG428100 Rh5CG451600 Rh5CG451700 Rh5DG441700 Rh5DG441800
rosa_wichuraiana	Rw5G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	36
Acc65I	GGTACC	1 cut(s)	457
AccB1I	GGYRCC	2 cut(s)	95, 457
AccB7I	CCANNNNNTGG	1 cut(s)	911
AccBSI	CCGCTC	2 cut(s)	61, 251
AccI	GTMKAC	1 cut(s)	514
AccII	CGCG	1 cut(s)	123
AciI	CCGC	8 cut(s)	5, 55, 59, 121, 172, 249, 261, 461
AcoI	YGGCCR	3 cut(s)	69, 222, 262
AcuI	CTGAAG	1 cut(s)	332
AcyI	GRCGYC	2 cut(s)	33, 875
AdeI	CACNNNGTG	1 cut(s)	686
AfaI	GTAC	2 cut(s)	357, 459
AfiI	CCNNNNNNNGG	5 cut(s)	45, 260, 576, 805, 911
AgsI	TTSAA	3 cut(s)	26, 655, 796
AhlI	ACTAGT	1 cut(s)	74
AjnI	CCWGG	1 cut(s)	574
AleI	CACNNNNGTG	1 cut(s)	93
AluBI	AGCT	6 cut(s)	346, 352, 388, 526, 802, 910
AluI	AGCT	6 cut(s)	346, 352, 388, 526, 802, 910
Alw21I	GWGCWC	3 cut(s)	434, 528, 813
Alw26I	GTCTC	3 cut(s)	500, 622, 679
Alw44I	GTGCAC	1 cut(s)	430
AlwNI	CAGNNNCTG	1 cut(s)	380
AoxI	GGCC	4 cut(s)	47, 69, 222, 262
ApaLI	GTGCAC	1 cut(s)	430
ApeKI	GCWGC	1 cut(s)	537
Asp700I	GAANNNNTTC	1 cut(s)	596
Asp718I	GGTACC	1 cut(s)	457
AspA2I	CCTAGG	1 cut(s)	611
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	399, 572
AsuHPI	GGTGA	5 cut(s)	19, 44, 669, 698, 743
AsuNHI	GCTAGC	1 cut(s)	853
AvaII	GGWCC	2 cut(s)	399, 572
AvrII	CCTAGG	1 cut(s)	611
BaeGI	GKGCMC	1 cut(s)	434
BaeI	ACNNNNGTAYC	2 cut(s)	441, 474
BanI	GGYRCC	2 cut(s)	95, 457
BanII	GRGCYC	1 cut(s)	528
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	3 cut(s)	434, 528, 813
BbvI	GCAGC	1 cut(s)	549
BccI	CCATC	5 cut(s)	4, 86, 107, 752, 827
BceAI	ACGGC	3 cut(s)	171, 226, 237
BciT130I	CCWGG	1 cut(s)	576
BcoDI	GTCTC	3 cut(s)	500, 622, 679
BcuI	ACTAGT	1 cut(s)	74
BfaI	CTAG	4 cut(s)	75, 477, 612, 854
BisI	GCNGC	2 cut(s)	262, 538
BlnI	CCTAGG	1 cut(s)	611
BlsI	GCNGC	2 cut(s)	263, 539
Bme1390I	CCNGG	1 cut(s)	576
Bme18I	GGWCC	2 cut(s)	399, 572
BmgT120I	GGNCC	2 cut(s)	399, 572
BmiI	GGNNCC	3 cut(s)	97, 459, 593
BmrFI	CCNGG	1 cut(s)	576
BmsI	GCATC	3 cut(s)	23, 336, 904
BmtI	GCTAGC	1 cut(s)	857
BpiI	GAAGAC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	824
BsaHI	GRCGYC	2 cut(s)	33, 875
BsaI	GGTCTC	3 cut(s)	500, 622, 679
BsaJI	CCNNGG	4 cut(s)	44, 425, 575, 611
BsaXI	ACNNNNNCTCC	4 cut(s)	217, 247, 272, 302
Bsc4I	CCNNNNNNNGG	5 cut(s)	45, 260, 576, 805, 911
Bse118I	RCCGGY	1 cut(s)	569
Bse1I	ACTGG	4 cut(s)	190, 282, 293, 510
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	4 cut(s)	44, 425, 575, 611
BseGI	GGATG	2 cut(s)	14, 419
BseLI	CCNNNNNNNGG	5 cut(s)	45, 260, 576, 805, 911
BseMII	CTCAG	3 cut(s)	311, 534, 636
BseNI	ACTGG	4 cut(s)	190, 282, 293, 510
BseRI	GAGGAG	5 cut(s)	107, 136, 139, 337, 821
BseSI	GKGCMC	1 cut(s)	434
BseXI	GCAGC	1 cut(s)	549
BsgI	GTGCAG	1 cut(s)	433
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	4 cut(s)	49, 71, 224, 264
BshNI	GGYRCC	2 cut(s)	95, 457
BsiHKAI	GWGCWC	3 cut(s)	434, 528, 813
BsiSI	CCGG	4 cut(s)	68, 309, 570, 850
BslFI	GGGAC	4 cut(s)	20, 231, 593, 903
BslI	CCNNNNNNNGG	5 cut(s)	45, 260, 576, 805, 911
BsmAI	GTCTC	3 cut(s)	500, 622, 679
BsmFI	GGGAC	4 cut(s)	20, 231, 593, 903
BsmI	GAATGC	2 cut(s)	472, 748
BsnI	GGCC	4 cut(s)	49, 71, 224, 264
Bso31I	GGTCTC	3 cut(s)	500, 622, 679
Bsp1286I	GDGCHC	3 cut(s)	434, 528, 813
Bsp143I	GATC	1 cut(s)	159
BspACI	CCGC	8 cut(s)	5, 55, 59, 121, 172, 249, 261, 461
BspANI	GGCC	4 cut(s)	49, 71, 224, 264
BspCNI	CTCAG	3 cut(s)	312, 533, 637
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	3 cut(s)	97, 459, 593
BspOI	GCTAGC	1 cut(s)	857
BspT107I	GGYRCC	2 cut(s)	95, 457
BspTNI	GGTCTC	3 cut(s)	500, 622, 679
BsrBI	CCGCTC	2 cut(s)	61, 251
BsrFI	RCCGGY	1 cut(s)	569
BsrI	ACTGG	4 cut(s)	190, 282, 293, 510
BssAI	RCCGGY	1 cut(s)	569
BssECI	CCNNGG	4 cut(s)	44, 425, 575, 611
BssMI	GATC	1 cut(s)	159
BssNI	GRCGYC	2 cut(s)	33, 875
BssT1I	CCWWGG	2 cut(s)	425, 611
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	1 cut(s)	454
Bst6I	CTCTTC	1 cut(s)	892
BstACI	GRCGYC	2 cut(s)	33, 875
BstC8I	GCNNGC	5 cut(s)	59, 386, 465, 705, 855
BstDEI	CTNAG	3 cut(s)	320, 520, 645
BstF5I	GGATG	2 cut(s)	14, 419
BstFNI	CGCG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	1 cut(s)	162
BstMAI	GTCTC	3 cut(s)	500, 622, 679
BstMBI	GATC	1 cut(s)	159
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 469, 808
BstNI	CCWGG	1 cut(s)	576
BstSCI	CCNGG	1 cut(s)	574
BstSLI	GKGCMC	1 cut(s)	434
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	549
BstV2I	GAAGAC	1 cut(s)	33
BstXI	CCANNNNNNTGG	1 cut(s)	833
BsuRI	GGCC	4 cut(s)	49, 71, 224, 264
BtgZI	GCGATG	2 cut(s)	313, 881
BtsCI	GGATG	2 cut(s)	14, 419
BtsIMutI	CAGTG	1 cut(s)	450
Cac8I	GCNNGC	5 cut(s)	59, 386, 465, 705, 855
CaiI	CAGNNNCTG	1 cut(s)	380
CfoI	GCGC	1 cut(s)	125
Cfr10I	RCCGGY	1 cut(s)	569
Cfr13I	GGNCC	2 cut(s)	399, 572
CseI	GACGC	1 cut(s)	864
Csp6I	GTAC	2 cut(s)	356, 458
CviAII	CATG	3 cut(s)	19, 709, 738
CviQI	GTAC	2 cut(s)	356, 458
DdeI	CTNAG	3 cut(s)	320, 520, 645
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
DraIII	CACNNNGTG	1 cut(s)	686
EaeI	YGGCCR	3 cut(s)	69, 222, 262
Eam1104I	CTCTTC	1 cut(s)	892
EarI	CTCTTC	1 cut(s)	892
Ecl136II	GAGCTC	1 cut(s)	526
Eco130I	CCWWGG	2 cut(s)	425, 611
Eco24I	GRGCYC	1 cut(s)	528
Eco31I	GGTCTC	3 cut(s)	500, 622, 679
Eco47I	GGWCC	2 cut(s)	399, 572
Eco53kI	GAGCTC	1 cut(s)	526
Eco57I	CTGAAG	1 cut(s)	332
EcoICRI	GAGCTC	1 cut(s)	526
EcoRII	CCWGG	1 cut(s)	574
EcoT14I	CCWWGG	2 cut(s)	425, 611
EcoT38I	GRGCYC	1 cut(s)	528
ErhI	CCWWGG	2 cut(s)	425, 611
FaeI	CATG	3 cut(s)	22, 712, 741
FaqI	GGGAC	4 cut(s)	20, 231, 593, 903
FatI	CATG	3 cut(s)	18, 708, 737
FauI	CCCGC	2 cut(s)	66, 256
FblI	GTMKAC	1 cut(s)	514
Fnu4HI	GCNGC	2 cut(s)	262, 538
FokI	GGATG	1 cut(s)	406
FriOI	GRGCYC	1 cut(s)	528
Fsp4HI	GCNGC	2 cut(s)	262, 538
FspBI	CTAG	4 cut(s)	75, 477, 612, 854
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	2 cut(s)	262, 538
GsuI	CTGGAG	1 cut(s)	299
HaeIII	GGCC	4 cut(s)	49, 71, 224, 264
HapII	CCGG	4 cut(s)	68, 309, 570, 850
HgaI	GACGC	1 cut(s)	864
HhaI	GCGC	1 cut(s)	125
Hin1I	GRCGYC	2 cut(s)	33, 875
Hin1II	CATG	3 cut(s)	22, 712, 741
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HinfI	GANTC	4 cut(s)	316, 623, 712, 884
HpaII	CCGG	4 cut(s)	68, 309, 570, 850
HphI	GGTGA	5 cut(s)	19, 44, 669, 698, 743
Hpy166II	GTNNAC	2 cut(s)	432, 515
Hpy188I	TCNGA	5 cut(s)	321, 486, 523, 622, 646
Hpy8I	GTNNAC	2 cut(s)	432, 515
Hpy99I	CGWCG	4 cut(s)	35, 157, 206, 880
HpyAV	CCTTC	2 cut(s)	116, 607
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4IV	ACGT	3 cut(s)	33, 201, 269
HpyCH4V	TGCA	3 cut(s)	414, 432, 450
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 469, 808
HpyF3I	CTNAG	3 cut(s)	320, 520, 645
HpySE526I	ACGT	3 cut(s)	33, 201, 269
Hsp92I	GRCGYC	2 cut(s)	33, 875
Hsp92II	CATG	3 cut(s)	22, 712, 741
HspAI	GCGC	1 cut(s)	123
KpnI	GGTACC	1 cut(s)	461
Kzo9I	GATC	1 cut(s)	159
LmnI	GCTCC	4 cut(s)	256, 324, 808, 929
Lsp1109I	GCAGC	1 cut(s)	549
LweI	GCATC	3 cut(s)	23, 336, 904
MaeI	CTAG	4 cut(s)	75, 477, 612, 854
MaeII	ACGT	3 cut(s)	33, 201, 269
MaeIII	GTNAC	1 cut(s)	270
MalI	GATC	1 cut(s)	161
MbiI	CCGCTC	2 cut(s)	61, 251
MboI	GATC	1 cut(s)	159
MboII	GAAGA	3 cut(s)	38, 499, 879
MhlI	GDGCHC	3 cut(s)	434, 528, 813
MlyI	GAGTC	1 cut(s)	878
MmeI	TCCRAC	3 cut(s)	260, 377, 753
MroXI	GAANNNNTTC	1 cut(s)	596
MseI	TTAA	2 cut(s)	218, 555
MslI	CAYNNNNRTG	2 cut(s)	93, 729
MspI	CCGG	4 cut(s)	68, 309, 570, 850
MspR9I	CCNGG	1 cut(s)	576
Mva1269I	GAATGC	2 cut(s)	472, 748
MvaI	CCWGG	1 cut(s)	576
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	3 cut(s)	11, 469, 808
NdeII	GATC	1 cut(s)	159
NheI	GCTAGC	1 cut(s)	853
NlaIII	CATG	3 cut(s)	22, 712, 741
NlaIV	GGNNCC	3 cut(s)	97, 459, 593
NmeAIII	GCCGAG	2 cut(s)	25, 871
NmuCI	GTSAC	1 cut(s)	270
OliI	CACNNNNGTG	1 cut(s)	93
PctI	GAATGC	2 cut(s)	472, 748
PdmI	GAANNNNTTC	1 cut(s)	596
PfeI	GAWTC	3 cut(s)	316, 623, 712
PflFI	GACNNNGTC	1 cut(s)	32
PflMI	CCANNNNNTGG	1 cut(s)	911
PkrI	GCNGC	2 cut(s)	263, 539
PleI	GAGTC	1 cut(s)	878
PpsI	GAGTC	1 cut(s)	878
Psp124BI	GAGCTC	1 cut(s)	528
Psp6I	CCWGG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	3 cut(s)	97, 459, 593
PspPI	GGNCC	2 cut(s)	399, 572
PstNI	CAGNNNCTG	1 cut(s)	380
PsyI	GACNNNGTC	1 cut(s)	32
RsaI	GTAC	2 cut(s)	357, 459
RsaNI	GTAC	2 cut(s)	356, 458
RseI	CAYNNNNRTG	2 cut(s)	93, 729
SacI	GAGCTC	1 cut(s)	528
SaqAI	TTAA	2 cut(s)	218, 555
SatI	GCNGC	2 cut(s)	262, 538
Sau3AI	GATC	1 cut(s)	159
Sau96I	GGNCC	2 cut(s)	399, 572
SchI	GAGTC	1 cut(s)	878
ScrFI	CCNGG	1 cut(s)	576
SduI	GDGCHC	3 cut(s)	434, 528, 813
SfaNI	GCATC	3 cut(s)	23, 336, 904
SinI	GGWCC	2 cut(s)	399, 572
SmiMI	CAYNNNNRTG	2 cut(s)	93, 729
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
SpeI	ACTAGT	1 cut(s)	74
SsiI	CCGC	8 cut(s)	5, 55, 59, 121, 172, 249, 261, 461
SspI	AATATT	1 cut(s)	496
SspMI	CTAG	4 cut(s)	75, 477, 612, 854
SstI	GAGCTC	1 cut(s)	528
StyD4I	CCNGG	1 cut(s)	574
StyI	CCWWGG	2 cut(s)	425, 611
TaaI	ACNGT	1 cut(s)	454
TaiI	ACGT	3 cut(s)	36, 204, 272
TaqI	TCGA	4 cut(s)	80, 152, 178, 882
TaqII	GACCGA	1 cut(s)	845
TauI	GCSGC	1 cut(s)	264
TfiI	GAWTC	3 cut(s)	316, 623, 712
Tru1I	TTAA	2 cut(s)	218, 555
Tru9I	TTAA	2 cut(s)	218, 555
TscAI	CASTG	1 cut(s)	457
TseFI	GTSAC	1 cut(s)	270
TseI	GCWGC	1 cut(s)	537
Tsp45I	GTSAC	1 cut(s)	270
TspDTI	ATGAA	3 cut(s)	589, 713, 725
TspRI	CASTG	1 cut(s)	457
Tth111I	GACNNNGTC	1 cut(s)	32
Van91I	CCANNNNNTGG	1 cut(s)	911
VneI	GTGCAC	1 cut(s)	430
VpaK11BI	GGWCC	2 cut(s)	399, 572
XcmI	CCANNNNNNNNNTGG	1 cut(s)	755
XmaJI	CCTAGG	1 cut(s)	611
XmiI	GTMKAC	1 cut(s)	514
XmnI	GAANNNNTTC	1 cut(s)	596
XspI	CTAG	4 cut(s)	75, 477, 612, 854
ZraI	GACGTC	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.