Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7996734.1

Orthogroup ID

OG0002318

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 383

Gene Structure 383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7996734.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

cctgaaaagcattctagttctccgaagaaaagtatttctggggagacgagtagaccctcagagctcactaatggcagcccaccaacaaaagttaaatgggttctcgccggtcctggggggaatatgtggaaccccttcatagatgactctagggtcgctgattctgtaaagcaaatgtggtctgagattttcaagtcatcaatctataacgaaaacgcaaaggcaccaaggtcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0008327 GO:0009628 GO:0009893 GO:0010369 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0098687 GO:1901265 GO:1901363 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

78

Amino Acids

8.56

Weight (kDa)

9.47

Isoelectric Point (pI)

59.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59800
fragaria_vesca	FvH4_3g35002 FvH4_3g35002 FvH4_3g35010
malus_domestica	MD03G1099400.v1.1 MD03G1099500.v1.1 MD11G1113700.v1.1
prunus_persica	Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084300_v2.0.a1 Prupe.6G084500_v2.0.a1
pyrus_communis	pycom03g08180 pycom03g08190 pycom11g09570
rosa_chinensis	RchiOBHm_Chr5g0062921 RchiOBHm_Chr5g0062931
rosa_laevigata	RLG00000009507 RLG00000035590 RLG00000035591
rosa_multiflora	Rmu_co7996734.1_g000001 Rmu_sc0000192.1_g000027 Rmu_sc0001738.1_g000035 Rmu_sc0003303.1_g000011 Rmu_sc0006171.1_g000008 Rmu_sc0010322.1_g000002 Rmu_sc0010322.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017700 Rroxscaffold_1G00017710
rosa_rugosa	Rorug05G0352700 Rorug05G0352700 Rorug05G0352800 Rorug05G0352900
rosa_samantha	Rh5AG413800 Rh5AG413900 Rh5BG428000 Rh5BG428100 Rh5CG451600 Rh5CG451700 Rh5DG441700 Rh5DG441800
rosa_wichuraiana	Rw5G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
AccB1I	GGYRCC	1 cut(s)	223
AccI	GTMKAC	1 cut(s)	52
AfiI	CCNNNNNNNGG	1 cut(s)	114
AgsI	TTSAA	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	75
Asp700I	GAANNNNTTC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	110
BanI	GGYRCC	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	87
BciT130I	CCWGG	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	2 cut(s)	15, 150
BisI	GCNGC	1 cut(s)	76
BlsI	GCNGC	1 cut(s)	77
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	2 cut(s)	131, 225
BmrFI	CCNGG	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	113, 227
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse118I	RCCGGY	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	113, 227
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMII	CTCAG	2 cut(s)	72, 174
BseXI	GCAGC	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	108
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmAI	GTCTC	1 cut(s)	38
BsmBI	CGTCTC	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	66
BspCNI	CTCAG	2 cut(s)	71, 175
BspLI	GGNNCC	2 cut(s)	131, 225
BspT107I	GGYRCC	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	107
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	2 cut(s)	113, 227
BssT1I	CCWWGG	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	58, 183
BstMAI	GTCTC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	87
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	110
CviJI	RGCY	2 cut(s)	64, 78
CviKI_1	RGCY	2 cut(s)	64, 78
DdeI	CTNAG	2 cut(s)	58, 183
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
Ecl136II	GAGCTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	227
Eco24I	GRGCYC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	110
Eco53kI	GAGCTC	1 cut(s)	64
EcoICRI	GAGCTC	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	227
EcoT38I	GRGCYC	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	227
Esp3I	CGTCTC	1 cut(s)	38
FaiI	YATR	3 cut(s)	125, 140, 207
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	76
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	76
FspBI	CTAG	2 cut(s)	15, 150
GluI	GCNGC	1 cut(s)	76
HapII	CCGG	1 cut(s)	108
HinfI	GANTC	2 cut(s)	146, 161
HpaII	CCGG	1 cut(s)	108
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188I	TCNGA	3 cut(s)	24, 61, 184
Hpy8I	GTNNAC	1 cut(s)	53
HpyAV	CCTTC	1 cut(s)	145
HpyF3I	CTNAG	2 cut(s)	58, 183
LpnPI	CCDG	5 cut(s)	15, 24, 99, 121, 126
Lsp1109I	GCAGC	1 cut(s)	87
MaeI	CTAG	2 cut(s)	15, 150
MboII	GAAGA	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	66
MlyI	GAGTC	1 cut(s)	140
MnlI	CCTC	1 cut(s)	67
MroXI	GAANNNNTTC	1 cut(s)	134
MseI	TTAA	2 cut(s)	93, 235
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	114
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	114
NlaIV	GGNNCC	2 cut(s)	131, 225
PctI	GAATGC	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	161
PkrI	GCNGC	1 cut(s)	77
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
Psp124BI	GAGCTC	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	2 cut(s)	131, 225
PspPI	GGNCC	1 cut(s)	110
SacI	GAGCTC	1 cut(s)	66
SaqAI	TTAA	2 cut(s)	93, 235
SatI	GCNGC	1 cut(s)	76
Sau96I	GGNCC	1 cut(s)	110
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	2 cut(s)	66, 233
SinI	GGWCC	1 cut(s)	110
SspMI	CTAG	2 cut(s)	15, 150
SstI	GAGCTC	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	112
StyI	CCWWGG	1 cut(s)	227
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	2 cut(s)	93, 235
Tru9I	TTAA	2 cut(s)	93, 235
TseI	GCWGC	1 cut(s)	75
TspDTI	ATGAA	1 cut(s)	127
VpaK11BI	GGWCC	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	52
XmnI	GAANNNNTTC	1 cut(s)	134
XspI	CTAG	2 cut(s)	15, 150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.