Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002318

Physical Location & Seq

Genomic Coordinates Forward (+)

5690500 .. 5694512

Gene Structure 4013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G084500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAGGATGCGCAAATCGTCACAGTCGAAGCCAATTCCGCTTCTGACAATGAGGCCAGCCGAAGATGAAGAAGAAGAAGAAGAAGAAGAACCCAGTAGTAGCAGCAAAAGGAAATTGCAAATGGTCACCACCTCACCCTTCAAACTCCCTGATGGTTGGTCCGTTGAAGAAAAGCGCCGTCCCCTTAGCAACAGTTGCAACCCCGGCCAAATCGACAGGTATTACTATGAGCCTGACACTGGACTGAAGTTTCGTTCTTTGGCAGCTGTTCAGAGATACCTAACAGAAGGGCAAATCGATACACGTACTATAAGATCCAAACCAGGCAGTGAATGCACTATACAAAATACACCGAGCACCAACAGGAACACTTCATCCTTTTTACTACCTGATGATTGGGAGATTGAGGAAAAGCGACGTTACAATTCTGCTACCGTGGACAAGGTACCTGTTTTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0008327 GO:0009628 GO:0009893 GO:0010369 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0098687 GO:1901265 GO:1901363 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

154

Amino Acids

17.69

Weight (kDa)

5.72

Isoelectric Point (pI)

80.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59800
fragaria_vesca	FvH4_3g35002 FvH4_3g35002 FvH4_3g35010
malus_domestica	MD03G1099400.v1.1 MD03G1099500.v1.1 MD11G1113700.v1.1
prunus_persica	Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084300_v2.0.a1 Prupe.6G084500_v2.0.a1
pyrus_communis	pycom03g08180 pycom03g08190 pycom11g09570
rosa_chinensis	RchiOBHm_Chr5g0062921 RchiOBHm_Chr5g0062931
rosa_laevigata	RLG00000009507 RLG00000035590 RLG00000035591
rosa_multiflora	Rmu_co7996734.1_g000001 Rmu_sc0000192.1_g000027 Rmu_sc0001738.1_g000035 Rmu_sc0003303.1_g000011 Rmu_sc0006171.1_g000008 Rmu_sc0010322.1_g000002 Rmu_sc0010322.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017700 Rroxscaffold_1G00017710
rosa_rugosa	Rorug05G0352700 Rorug05G0352700 Rorug05G0352800 Rorug05G0352900
rosa_samantha	Rh5AG413800 Rh5AG413900 Rh5BG428000 Rh5BG428100 Rh5CG451600 Rh5CG451700 Rh5DG441700 Rh5DG441800
rosa_wichuraiana	Rw5G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	11
Acc65I	GGTACC	1 cut(s)	445
AccB1I	GGYRCC	1 cut(s)	445
AciI	CCGC	1 cut(s)	38
AclWI	GGATC	1 cut(s)	309
AcoI	YGGCCR	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	2 cut(s)	307, 447
AfiI	CCNNNNNNNGG	1 cut(s)	239
AflIII	ACRYGT	1 cut(s)	302
AgsI	TTSAA	2 cut(s)	142, 167
AjnI	CCWGG	1 cut(s)	322
AloI	GAACNNNNNNTCC	2 cut(s)	359, 391
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
Alw21I	GWGCWC	1 cut(s)	359
AlwI	GGATC	1 cut(s)	309
AoxI	GGCC	2 cut(s)	53, 205
ApeKI	GCWGC	2 cut(s)	102, 263
ArsI	GACNNNNNNTTYG	2 cut(s)	234, 266
Asp718I	GGTACC	1 cut(s)	445
AspLEI	GCGC	2 cut(s)	12, 177
AspS9I	GGNCC	1 cut(s)	159
AsuC2I	CCSGG	1 cut(s)	204
AsuHPI	GGTGA	2 cut(s)	118, 126
AvaII	GGWCC	1 cut(s)	159
BanI	GGYRCC	1 cut(s)	445
Bbv12I	GWGCWC	1 cut(s)	359
BbvI	GCAGC	2 cut(s)	114, 275
BccI	CCATC	1 cut(s)	146
BceAI	ACGGC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	324
BcnI	CCSGG	1 cut(s)	204
BfoI	RGCGCY	1 cut(s)	178
BisI	GCNGC	2 cut(s)	103, 264
BlsI	GCNGC	2 cut(s)	104, 265
Bme1390I	CCNGG	2 cut(s)	204, 324
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	2 cut(s)	204, 324
BmrI	ACTGGG	1 cut(s)	87
BmuI	ACTGGG	1 cut(s)	87
Bpu10I	CCTNAGC	1 cut(s)	185
BpuMI	CCSGG	1 cut(s)	204
Bsa29I	ATCGAT	1 cut(s)	297
BsaAI	YACGTR	1 cut(s)	305
BsaJI	CCNNGG	2 cut(s)	202, 435
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	2 cut(s)	93, 244
BseBI	CCWGG	1 cut(s)	324
BseCI	ATCGAT	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	202, 435
BseGI	GGATG	2 cut(s)	12, 374
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseNI	ACTGG	2 cut(s)	93, 244
BseXI	GCAGC	2 cut(s)	114, 275
BshFI	GGCC	2 cut(s)	55, 207
BshNI	GGYRCC	1 cut(s)	445
BshVI	ATCGAT	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	359
BsiSI	CCGG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	165
BsmI	GAATGC	1 cut(s)	338
BsnI	GGCC	2 cut(s)	55, 207
Bsp1286I	GDGCHC	1 cut(s)	359
Bsp143I	GATC	1 cut(s)	314
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	2 cut(s)	55, 207
BspDI	ATCGAT	1 cut(s)	297
BspLI	GGNNCC	1 cut(s)	447
BspPI	GGATC	1 cut(s)	309
BspT107I	GGYRCC	1 cut(s)	445
BsrI	ACTGG	2 cut(s)	93, 244
BssECI	CCNNGG	2 cut(s)	202, 435
BssMI	GATC	1 cut(s)	314
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	3 cut(s)	24, 194, 436
BstAPI	GCANNNNNTGC	2 cut(s)	195, 333
BstBAI	YACGTR	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	185
BstDSI	CCRYGG	1 cut(s)	435
BstEII	GGTNACC	1 cut(s)	124
BstF5I	GGATG	2 cut(s)	12, 374
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	2 cut(s)	12, 177
BstKTI	GATC	1 cut(s)	317
BstMBI	GATC	1 cut(s)	314
BstMWI	GCNNNNNNNGC	4 cut(s)	37, 195, 204, 333
BstNI	CCWGG	1 cut(s)	324
BstPI	GGTNACC	1 cut(s)	124
BstSCI	CCNGG	2 cut(s)	202, 322
BstV1I	GCAGC	2 cut(s)	114, 275
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
Bsu15I	ATCGAT	1 cut(s)	297
BsuRI	GGCC	2 cut(s)	55, 207
BsuTUI	ATCGAT	1 cut(s)	297
BtgI	CCRYGG	1 cut(s)	435
BtsCI	GGATG	2 cut(s)	12, 374
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	2 cut(s)	237, 334
Cac8I	GCNNGC	1 cut(s)	57
CfoI	GCGC	2 cut(s)	12, 177
Cfr13I	GGNCC	1 cut(s)	159
ClaI	ATCGAT	1 cut(s)	297
Csp6I	GTAC	2 cut(s)	306, 446
CviJI	RGCY	6 cut(s)	31, 55, 59, 207, 232, 266
CviKI_1	RGCY	6 cut(s)	31, 55, 59, 207, 232, 266
CviQI	GTAC	2 cut(s)	306, 446
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	1 cut(s)	316
DpnII	GATC	1 cut(s)	314
EaeI	YGGCCR	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	266
Eco91I	GGTNACC	1 cut(s)	124
EcoO65I	GGTNACC	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	322
FaiI	YATR	3 cut(s)	228, 311, 341
FaqI	GGGAC	1 cut(s)	165
Fnu4HI	GCNGC	2 cut(s)	103, 264
FokI	GGATG	2 cut(s)	19, 361
Fsp4HI	GCNGC	2 cut(s)	103, 264
FspI	TGCGCA	1 cut(s)	11
GlaI	GCGC	2 cut(s)	11, 176
GluI	GCNGC	2 cut(s)	103, 264
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	2 cut(s)	55, 207
HapII	CCGG	1 cut(s)	204
HhaI	GCGC	2 cut(s)	12, 177
Hin6I	GCGC	2 cut(s)	10, 175
HinP1I	GCGC	2 cut(s)	10, 175
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	2 cut(s)	118, 126
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	2 cut(s)	45, 273
Hpy8I	GTNNAC	1 cut(s)	439
Hpy99I	CGWCG	1 cut(s)	420
HpyAV	CCTTC	2 cut(s)	148, 281
HpyCH4III	ACNGT	3 cut(s)	24, 194, 436
HpyCH4IV	ACGT	2 cut(s)	304, 418
HpyCH4V	TGCA	3 cut(s)	118, 198, 336
HpyF10VI	GCNNNNNNNGC	4 cut(s)	37, 195, 204, 333
HpyF3I	CTNAG	1 cut(s)	185
HpySE526I	ACGT	2 cut(s)	304, 418
HspAI	GCGC	2 cut(s)	10, 175
KpnI	GGTACC	1 cut(s)	449
Kzo9I	GATC	1 cut(s)	314
Lsp1109I	GCAGC	2 cut(s)	114, 275
MaeII	ACGT	2 cut(s)	304, 418
MaeIII	GTNAC	3 cut(s)	18, 124, 419
MalI	GATC	1 cut(s)	316
MboI	GATC	1 cut(s)	314
MboII	GAAGA	9 cut(s)	74, 80, 83, 86, 89, 92, 95, 98, 179
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	1 cut(s)	359
MluCI	AATT	3 cut(s)	33, 113, 424
MnlI	CCTC	3 cut(s)	45, 142, 400
MseI	TTAA	1 cut(s)	460
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	2 cut(s)	204, 324
Mva1269I	GAATGC	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	4 cut(s)	37, 195, 204, 333
NciI	CCSGG	1 cut(s)	204
NdeII	GATC	1 cut(s)	314
NlaIV	GGNNCC	1 cut(s)	447
NmuCI	GTSAC	2 cut(s)	18, 124
NsbI	TGCGCA	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PctI	GAATGC	1 cut(s)	338
PkrI	GCNGC	2 cut(s)	104, 265
Ppu21I	YACGTR	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	322
PspEI	GGTNACC	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	447
PspPI	GGNCC	1 cut(s)	159
PsuI	RGATCY	1 cut(s)	314
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	2 cut(s)	307, 447
RsaNI	GTAC	2 cut(s)	306, 446
SaqAI	TTAA	1 cut(s)	460
SatI	GCNGC	2 cut(s)	103, 264
Sau3AI	GATC	1 cut(s)	314
Sau96I	GGNCC	1 cut(s)	159
ScrFI	CCNGG	2 cut(s)	204, 324
SduI	GDGCHC	1 cut(s)	359
SetI	ASST	9 cut(s)	134, 221, 268, 282, 307, 391, 421, 447, 451
SinI	GGWCC	1 cut(s)	159
Sse9I	AATT	3 cut(s)	33, 113, 424
SsiI	CCGC	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	202, 322
TaaI	ACNGT	3 cut(s)	24, 194, 436
TaiI	ACGT	2 cut(s)	307, 421
TaqI	TCGA	3 cut(s)	26, 213, 297
TasI	AATT	3 cut(s)	33, 113, 424
Tru1I	TTAA	1 cut(s)	460
Tru9I	TTAA	1 cut(s)	460
TscAI	CASTG	2 cut(s)	244, 334
TseFI	GTSAC	2 cut(s)	18, 124
TseI	GCWGC	2 cut(s)	102, 263
Tsp45I	GTSAC	2 cut(s)	18, 124
TspDTI	ATGAA	2 cut(s)	81, 363
TspGWI	ACGGA	1 cut(s)	151
TspRI	CASTG	2 cut(s)	244, 334
VpaK11BI	GGWCC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.