Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002318

Physical Location & Seq

Genomic Coordinates Reverse (-)

62944904 .. 62948354

Gene Structure 3451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG451600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGATGGGAAAATTTTTCATTCACAATGTCAATTTGCAGATGCAATCCTTCAAGAGAAGTTCTTCCTTCACACTACCAGATGGTTGGGAAATTGAGGAAAGGCCGCGAAAGAATACTAATTCTAGTCATAGTGACAAGTATTATATTGAGCCAGGGACTGGAAAGCGGTTTCGTTCTTTAATATCTGTTGAGAGATACCTAACAGAAGAAATTGAACACACTCCACTTCAGGCATTGATGCCTGCCAATAAGTCCAATCTTTCAAGTAGTTCTGGCAGTCAGAAGAAGAAAATCAGGTCCCTGGAATTAATTTCTAAGCATTCACCATGTTCGAATGAATGTTATAATAGCACACTTGATGCAATGAGGCTCAACACTTATTCTACACCTGAAAAGCATTCTAGTTCTCCGAAGAAAAGTATTTCTGGGGAGACGAGTAGACCCTCAGAGCTCACTAATGGCAGCCCACCAACAAAAGTTAAATGGGTTCTCGCCGGTCCTGGGGGGAATATGTGGAACCCCTTCATAGATGACTCTAGGGTCGCTGATTCTGTAAAGCAAATGTGGTCTGAGATTTTCAAGTCATCAATCTATAACGAAAACGCAAAGGCACCAAGGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0008327 GO:0009628 GO:0009893 GO:0010369 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0098687 GO:1901265 GO:1901363 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

207

Amino Acids

23.37

Weight (kDa)

9.47

Isoelectric Point (pI)

68.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	19 - 79	5.6e-11	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59800
fragaria_vesca	FvH4_3g35002 FvH4_3g35002 FvH4_3g35010
malus_domestica	MD03G1099400.v1.1 MD03G1099500.v1.1 MD11G1113700.v1.1
prunus_persica	Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084300_v2.0.a1 Prupe.6G084500_v2.0.a1
pyrus_communis	pycom03g08180 pycom03g08190 pycom11g09570
rosa_chinensis	RchiOBHm_Chr5g0062921 RchiOBHm_Chr5g0062931
rosa_laevigata	RLG00000009507 RLG00000035590 RLG00000035591
rosa_multiflora	Rmu_co7996734.1_g000001 Rmu_sc0000192.1_g000027 Rmu_sc0001738.1_g000035 Rmu_sc0003303.1_g000011 Rmu_sc0006171.1_g000008 Rmu_sc0010322.1_g000002 Rmu_sc0010322.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017700 Rroxscaffold_1G00017710
rosa_rugosa	Rorug05G0352700 Rorug05G0352700 Rorug05G0352800 Rorug05G0352900
rosa_samantha	Rh5AG413800 Rh5AG413900 Rh5BG428000 Rh5BG428100 Rh5CG451600 Rh5CG451700 Rh5DG441700 Rh5DG441800
rosa_wichuraiana	Rw5G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
AasI	GACNNNNNNGTC	1 cut(s)	539
AccB1I	GGYRCC	1 cut(s)	610
AccB7I	CCANNNNNTGG	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	439
AccII	CGCG	1 cut(s)	106
AciI	CCGC	2 cut(s)	104, 166
AcsI	RAATTY	1 cut(s)	11
AcuI	CTGAAG	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	158, 501
AgsI	TTSAA	4 cut(s)	52, 215, 264, 580
AjnI	CCWGG	3 cut(s)	151, 300, 499
AluBI	AGCT	1 cut(s)	451
AluI	AGCT	1 cut(s)	451
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	1 cut(s)	425
AlwNI	CAGNNNCTG	1 cut(s)	158
AoxI	GGCC	1 cut(s)	101
ApeKI	GCWGC	1 cut(s)	462
ApoI	RAATTY	1 cut(s)	11
AseI	ATTAAT	1 cut(s)	308
Asp700I	GAANNNNTTC	2 cut(s)	61, 521
AspS9I	GGNCC	2 cut(s)	297, 497
AsuHPI	GGTGA	1 cut(s)	315
AsuII	TTCGAA	1 cut(s)	332
AvaII	GGWCC	2 cut(s)	297, 497
BanI	GGYRCC	1 cut(s)	610
BanII	GRGCYC	1 cut(s)	453
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	474
BccI	CCATC	1 cut(s)	74
BciT130I	CCWGG	3 cut(s)	153, 302, 501
BcoDI	GTCTC	1 cut(s)	425
BfaI	CTAG	3 cut(s)	123, 402, 537
BisI	GCNGC	2 cut(s)	104, 463
BlsI	GCNGC	2 cut(s)	105, 464
Bme1390I	CCNGG	3 cut(s)	153, 302, 501
Bme18I	GGWCC	2 cut(s)	297, 497
BmgT120I	GGNCC	2 cut(s)	297, 497
BmiI	GGNNCC	3 cut(s)	299, 518, 612
BmrFI	CCNGG	3 cut(s)	153, 302, 501
BmsI	GCATC	3 cut(s)	30, 228, 349
Bpu14I	TTCGAA	1 cut(s)	332
BsaJI	CCNNGG	4 cut(s)	152, 300, 500, 614
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 501
Bse118I	RCCGGY	1 cut(s)	494
Bse1I	ACTGG	1 cut(s)	163
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	3 cut(s)	153, 302, 501
BseDI	CCNNGG	4 cut(s)	152, 300, 500, 614
BseLI	CCNNNNNNNGG	2 cut(s)	158, 501
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	2 cut(s)	459, 561
BseNI	ACTGG	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	474
Bsh1236I	CGCG	1 cut(s)	106
BshFI	GGCC	1 cut(s)	103
BshNI	GGYRCC	1 cut(s)	610
BsiHKAI	GWGCWC	1 cut(s)	453
BsiSI	CCGG	1 cut(s)	495
BslFI	GGGAC	2 cut(s)	169, 283
BslI	CCNNNNNNNGG	2 cut(s)	158, 501
BsmAI	GTCTC	1 cut(s)	425
BsmBI	CGTCTC	1 cut(s)	425
BsmFI	GGGAC	2 cut(s)	169, 283
BsmI	GAATGC	2 cut(s)	319, 397
BsnI	GGCC	1 cut(s)	103
Bsp119I	TTCGAA	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	453
BspACI	CCGC	2 cut(s)	104, 166
BspANI	GGCC	1 cut(s)	103
BspCNI	CTCAG	2 cut(s)	458, 562
BspFNI	CGCG	1 cut(s)	106
BspLI	GGNNCC	3 cut(s)	299, 518, 612
BspT104I	TTCGAA	1 cut(s)	332
BspT107I	GGYRCC	1 cut(s)	610
BsrDI	GCAATG	1 cut(s)	369
BsrFI	RCCGGY	1 cut(s)	494
BsrI	ACTGG	1 cut(s)	163
BssAI	RCCGGY	1 cut(s)	494
BssECI	CCNNGG	4 cut(s)	152, 300, 500, 614
BssT1I	CCWWGG	1 cut(s)	614
Bst2UI	CCWGG	3 cut(s)	153, 302, 501
BstBI	TTCGAA	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	3 cut(s)	315, 445, 570
BstFNI	CGCG	1 cut(s)	106
BstMAI	GTCTC	1 cut(s)	425
BstNI	CCWGG	3 cut(s)	153, 302, 501
BstSCI	CCNGG	3 cut(s)	151, 300, 499
BstUI	CGCG	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	474
BstXI	CCANNNNNNTGG	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	243
CaiI	CAGNNNCTG	1 cut(s)	158
Cfr10I	RCCGGY	1 cut(s)	494
Cfr13I	GGNCC	2 cut(s)	297, 497
CviAII	CATG	1 cut(s)	327
CviJI	RGCY	5 cut(s)	103, 151, 370, 451, 465
CviKI_1	RGCY	5 cut(s)	103, 151, 370, 451, 465
DdeI	CTNAG	3 cut(s)	315, 445, 570
DrdI	GACNNNNNNGTC	1 cut(s)	539
DseDI	GACNNNNNNGTC	1 cut(s)	539
Ecl136II	GAGCTC	1 cut(s)	451
Eco130I	CCWWGG	1 cut(s)	614
Eco24I	GRGCYC	1 cut(s)	453
Eco47I	GGWCC	2 cut(s)	297, 497
Eco53kI	GAGCTC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	212
EcoICRI	GAGCTC	1 cut(s)	451
EcoO109I	RGGNCCY	1 cut(s)	297
EcoRII	CCWGG	3 cut(s)	151, 300, 499
EcoT14I	CCWWGG	1 cut(s)	614
EcoT38I	GRGCYC	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	614
Esp3I	CGTCTC	1 cut(s)	425
FaeI	CATG	1 cut(s)	330
FaiI	YATR	7 cut(s)	129, 144, 328, 345, 512, 527, 594
FaqI	GGGAC	2 cut(s)	169, 283
FatI	CATG	1 cut(s)	326
FblI	GTMKAC	1 cut(s)	439
Fnu4HI	GCNGC	2 cut(s)	104, 463
FriOI	GRGCYC	1 cut(s)	453
Fsp4HI	GCNGC	2 cut(s)	104, 463
FspBI	CTAG	3 cut(s)	123, 402, 537
GluI	GCNGC	2 cut(s)	104, 463
HaeIII	GGCC	1 cut(s)	103
HapII	CCGG	1 cut(s)	495
Hin1II	CATG	1 cut(s)	330
HinfI	GANTC	2 cut(s)	533, 548
HpaII	CCGG	1 cut(s)	495
HphI	GGTGA	1 cut(s)	315
Hpy166II	GTNNAC	1 cut(s)	440
Hpy188I	TCNGA	4 cut(s)	282, 411, 448, 571
Hpy188III	TCNNGA	1 cut(s)	52
Hpy8I	GTNNAC	1 cut(s)	440
HpyAV	CCTTC	3 cut(s)	58, 76, 532
HpyCH4V	TGCA	3 cut(s)	37, 43, 362
HpyF3I	CTNAG	3 cut(s)	315, 445, 570
Hsp92II	CATG	1 cut(s)	330
Lsp1109I	GCAGC	1 cut(s)	474
LweI	GCATC	3 cut(s)	30, 228, 349
MaeI	CTAG	3 cut(s)	123, 402, 537
MaeIII	GTNAC	1 cut(s)	131
MboII	GAAGA	5 cut(s)	54, 218, 295, 298, 424
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	7 cut(s)	11, 31, 90, 118, 210, 305, 309
MlyI	GAGTC	1 cut(s)	527
MnlI	CCTC	3 cut(s)	88, 360, 454
MroXI	GAANNNNTTC	2 cut(s)	61, 521
MseI	TTAA	4 cut(s)	179, 308, 480, 622
MspI	CCGG	1 cut(s)	495
MspR9I	CCNGG	3 cut(s)	153, 302, 501
Mva1269I	GAATGC	2 cut(s)	319, 397
MvaI	CCWGG	3 cut(s)	153, 302, 501
MvnI	CGCG	1 cut(s)	106
NlaIII	CATG	1 cut(s)	330
NlaIV	GGNNCC	3 cut(s)	299, 518, 612
NmuCI	GTSAC	1 cut(s)	131
NspV	TTCGAA	1 cut(s)	332
PctI	GAATGC	2 cut(s)	319, 397
PdmI	GAANNNNTTC	2 cut(s)	61, 521
PfeI	GAWTC	1 cut(s)	548
PflMI	CCANNNNNTGG	1 cut(s)	158
PkrI	GCNGC	2 cut(s)	105, 464
PleI	GAGTC	1 cut(s)	527
PpsI	GAGTC	1 cut(s)	527
PpuMI	RGGWCCY	1 cut(s)	297
PshBI	ATTAAT	1 cut(s)	308
PsiI	TTATAA	1 cut(s)	345
Psp124BI	GAGCTC	1 cut(s)	453
Psp5II	RGGWCCY	1 cut(s)	297
Psp6I	CCWGG	3 cut(s)	151, 300, 499
PspGI	CCWGG	3 cut(s)	151, 300, 499
PspN4I	GGNNCC	3 cut(s)	299, 518, 612
PspPI	GGNCC	2 cut(s)	297, 497
PspPPI	RGGWCCY	1 cut(s)	297
PstNI	CAGNNNCTG	1 cut(s)	158
SacI	GAGCTC	1 cut(s)	453
SaqAI	TTAA	4 cut(s)	179, 308, 480, 622
SatI	GCNGC	2 cut(s)	104, 463
Sau96I	GGNCC	2 cut(s)	297, 497
SchI	GAGTC	1 cut(s)	527
ScrFI	CCNGG	3 cut(s)	153, 302, 501
SduI	GDGCHC	1 cut(s)	453
SetI	ASST	5 cut(s)	201, 299, 391, 453, 620
SfaNI	GCATC	3 cut(s)	30, 228, 349
SfuI	TTCGAA	1 cut(s)	332
SinI	GGWCC	2 cut(s)	297, 497
Sse9I	AATT	7 cut(s)	11, 31, 90, 118, 210, 305, 309
SsiI	CCGC	2 cut(s)	104, 166
SspMI	CTAG	3 cut(s)	123, 402, 537
SstI	GAGCTC	1 cut(s)	453
StyD4I	CCNGG	3 cut(s)	151, 300, 499
StyI	CCWWGG	1 cut(s)	614
TaqI	TCGA	1 cut(s)	332
TasI	AATT	7 cut(s)	11, 31, 90, 118, 210, 305, 309
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	4 cut(s)	179, 308, 480, 622
Tru9I	TTAA	4 cut(s)	179, 308, 480, 622
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	1 cut(s)	462
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	3 cut(s)	7, 351, 514
Van91I	CCANNNNNTGG	1 cut(s)	158
VpaK11BI	GGWCC	2 cut(s)	297, 497
VspI	ATTAAT	1 cut(s)	308
XapI	RAATTY	1 cut(s)	11
XmiI	GTMKAC	1 cut(s)	439
XmnI	GAANNNNTTC	2 cut(s)	61, 521
XspI	CTAG	3 cut(s)	123, 402, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.