Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006171.1

Orthogroup ID

OG0002318

Physical Location & Seq

Genomic Coordinates Reverse (-)

25959 .. 28289

Gene Structure 2331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006171.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atggaacctgcaaaaattgattggaaaaacctggaatggacattcgtagaggacaaagcctacgagcatatcaacgcccccaagtggtttgatttcttgaaccccaatgacaacctcgtcgacgaccacgcctgttatgttccttttcagcctgcgaagcattctagttctccgaagaaaaatatttatggggagaccagtagatcctcagagctcactaatggcagcgcaccaacaaaagttaaatgggttctcgccggttctgggggaaatatgtggaaccccttcatagatgcctctagggtcactgattctgtaaagcaaatgtggtctgagattttcaagtcatcaatctatgaggaggtagagcctgccactgaaattgagaaggatgttagtgctgagaagcagttggaagagaatgaagctgctgatgccaataatagatggagcctgaggacaatgttgactcaaccaacagtcgtcgtggcttcaaatcctctatacggtgtcgtatggtctgagcttcactccacctggcatcaggagcgtatagaaagtgatacgtcactctcgtctcgtgttgacgtcatcgtcgtcttcttcctcttcttctccgcaacaacaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0008327 GO:0009628 GO:0009893 GO:0010369 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0098687 GO:1901265 GO:1901363 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

210

Amino Acids

23.94

Weight (kDa)

4.91

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59800
fragaria_vesca	FvH4_3g35002 FvH4_3g35002 FvH4_3g35010
malus_domestica	MD03G1099400.v1.1 MD03G1099500.v1.1 MD11G1113700.v1.1
prunus_persica	Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084300_v2.0.a1 Prupe.6G084500_v2.0.a1
pyrus_communis	pycom03g08180 pycom03g08190 pycom11g09570
rosa_chinensis	RchiOBHm_Chr5g0062921 RchiOBHm_Chr5g0062931
rosa_laevigata	RLG00000009507 RLG00000035590 RLG00000035591
rosa_multiflora	Rmu_co7996734.1_g000001 Rmu_sc0000192.1_g000027 Rmu_sc0001738.1_g000035 Rmu_sc0003303.1_g000011 Rmu_sc0006171.1_g000008 Rmu_sc0010322.1_g000002 Rmu_sc0010322.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017700 Rroxscaffold_1G00017710
rosa_rugosa	Rorug05G0352700 Rorug05G0352700 Rorug05G0352800 Rorug05G0352900
rosa_samantha	Rh5AG413800 Rh5AG413900 Rh5BG428000 Rh5BG428100 Rh5CG451600 Rh5CG451700 Rh5DG441700 Rh5DG441800
rosa_wichuraiana	Rw5G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	116, 593
AatII	GACGTC	1 cut(s)	591
Acc36I	ACCTGC	1 cut(s)	16
AccI	GTMKAC	1 cut(s)	120
AciI	CCGC	1 cut(s)	618
AclWI	GGATC	1 cut(s)	198
AcyI	GRCGYC	1 cut(s)	588
AfiI	CCNNNNNNNGG	3 cut(s)	84, 264, 506
AgsI	TTSAA	3 cut(s)	100, 343, 495
AjnI	CCWGG	2 cut(s)	30, 536
AluBI	AGCT	3 cut(s)	214, 428, 526
AluI	AGCT	3 cut(s)	214, 428, 526
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	2 cut(s)	188, 582
AlwI	GGATC	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	225, 428
Asp700I	GAANNNNTTC	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	230
AxyI	CCTNAGG	1 cut(s)	455
BanII	GRGCYC	1 cut(s)	216
BauI	CACGAG	1 cut(s)	579
BbsI	GAAGAC	1 cut(s)	592
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	237, 415
BccI	CCATC	1 cut(s)	441
BciT130I	CCWGG	2 cut(s)	32, 538
BcoDI	GTCTC	2 cut(s)	188, 582
BfaI	CTAG	2 cut(s)	165, 300
BfuAI	ACCTGC	1 cut(s)	16
BisI	GCNGC	2 cut(s)	226, 429
BlsI	GCNGC	2 cut(s)	227, 430
Bme1390I	CCNGG	2 cut(s)	32, 538
BmiI	GGNNCC	3 cut(s)	6, 281, 452
BmrFI	CCNGG	2 cut(s)	32, 538
BmsI	GCATC	3 cut(s)	283, 424, 550
BpiI	GAAGAC	1 cut(s)	592
BplI	GAGNNNNNCTC	2 cut(s)	515, 547
BsaHI	GRCGYC	1 cut(s)	588
BsaI	GGTCTC	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 264, 506
Bse118I	RCCGGY	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	198
Bse21I	CCTNAGG	1 cut(s)	455
BseBI	CCWGG	2 cut(s)	32, 538
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	3 cut(s)	84, 264, 506
BseMII	CTCAG	5 cut(s)	222, 324, 393, 446, 513
BseNI	ACTGG	1 cut(s)	198
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	2 cut(s)	237, 415
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	258
BslI	CCNNNNNNNGG	3 cut(s)	84, 264, 506
BsmAI	GTCTC	2 cut(s)	188, 582
BsmBI	CGTCTC	1 cut(s)	582
BsmI	GAATGC	1 cut(s)	160
Bso31I	GGTCTC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	203
BspACI	CCGC	1 cut(s)	618
BspCNI	CTCAG	5 cut(s)	221, 325, 394, 447, 514
BspLI	GGNNCC	3 cut(s)	6, 281, 452
BspMI	ACCTGC	1 cut(s)	16
BspPI	GGATC	1 cut(s)	198
BspTNI	GGTCTC	1 cut(s)	188
BsrFI	RCCGGY	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	198
BssAI	RCCGGY	1 cut(s)	257
BssMI	GATC	1 cut(s)	203
BssNI	GRCGYC	1 cut(s)	588
BssSI	CACGAG	1 cut(s)	579
Bst2BI	CACGAG	1 cut(s)	579
Bst2UI	CCWGG	2 cut(s)	32, 538
Bst4CI	ACNGT	2 cut(s)	481, 509
Bst6I	CTCTTC	2 cut(s)	411, 614
BstACI	GRCGYC	1 cut(s)	588
BstC8I	GCNNGC	2 cut(s)	153, 372
BstDEI	CTNAG	5 cut(s)	208, 333, 402, 455, 522
BstF5I	GGATG	1 cut(s)	397
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	1 cut(s)	206
BstMAI	GTCTC	2 cut(s)	188, 582
BstMBI	GATC	1 cut(s)	203
BstMWI	GCNNNNNNNGC	3 cut(s)	157, 434, 547
BstNI	CCWGG	2 cut(s)	32, 538
BstSCI	CCNGG	2 cut(s)	30, 536
BstV1I	GCAGC	2 cut(s)	237, 415
BstV2I	GAAGAC	1 cut(s)	592
BstX2I	RGATCY	1 cut(s)	203
BstYI	RGATCY	1 cut(s)	203
Bsu36I	CCTNAGG	1 cut(s)	455
BtsCI	GGATG	1 cut(s)	397
BtsIMutI	CAGTG	2 cut(s)	306, 375
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	2 cut(s)	153, 372
CfoI	GCGC	1 cut(s)	230
Cfr10I	RCCGGY	1 cut(s)	257
CspCI	CAANNNNNGTGG	2 cut(s)	364, 399
CviJI	RGCY	8 cut(s)	59, 151, 214, 370, 428, 453, 491, 526
CviKI_1	RGCY	8 cut(s)	59, 151, 214, 370, 428, 453, 491, 526
DdeI	CTNAG	5 cut(s)	208, 333, 402, 455, 522
DpnI	GATC	1 cut(s)	205
DpnII	GATC	1 cut(s)	203
DrdI	GACNNNNNNGTC	2 cut(s)	116, 593
DseDI	GACNNNNNNGTC	2 cut(s)	116, 593
Eam1104I	CTCTTC	2 cut(s)	411, 614
EarI	CTCTTC	2 cut(s)	411, 614
Ecl136II	GAGCTC	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	188
Eco53kI	GAGCTC	1 cut(s)	214
Eco81I	CCTNAGG	1 cut(s)	455
EcoICRI	GAGCTC	1 cut(s)	214
EcoRII	CCWGG	2 cut(s)	30, 536
EcoT38I	GRGCYC	1 cut(s)	216
Esp3I	CGTCTC	1 cut(s)	582
FaiI	YATR	9 cut(s)	69, 138, 189, 275, 290, 357, 505, 517, 554
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	226, 429
FokI	GGATG	1 cut(s)	404
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	2 cut(s)	226, 429
FspBI	CTAG	2 cut(s)	165, 300
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	2 cut(s)	226, 429
HapII	CCGG	1 cut(s)	258
HhaI	GCGC	1 cut(s)	230
Hin1I	GRCGYC	1 cut(s)	588
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HincII	GTYRAC	3 cut(s)	121, 468, 586
HindII	GTYRAC	3 cut(s)	121, 468, 586
HinfI	GANTC	2 cut(s)	311, 469
HpaII	CCGG	1 cut(s)	258
Hpy166II	GTNNAC	3 cut(s)	121, 468, 586
Hpy188I	TCNGA	4 cut(s)	174, 211, 334, 523
Hpy188III	TCNNGA	2 cut(s)	97, 545
Hpy8I	GTNNAC	3 cut(s)	121, 468, 586
Hpy99I	CGWCG	4 cut(s)	122, 125, 488, 599
HpyAV	CCTTC	2 cut(s)	295, 382
HpyCH4III	ACNGT	2 cut(s)	481, 509
HpyCH4IV	ACGT	2 cut(s)	566, 588
HpyCH4V	TGCA	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	3 cut(s)	157, 434, 547
HpyF3I	CTNAG	5 cut(s)	208, 333, 402, 455, 522
HpySE526I	ACGT	2 cut(s)	566, 588
Hsp92I	GRCGYC	1 cut(s)	588
HspAI	GCGC	1 cut(s)	228
Kzo9I	GATC	1 cut(s)	203
LmnI	GCTCC	2 cut(s)	450, 547
Lsp1109I	GCAGC	2 cut(s)	237, 415
LweI	GCATC	3 cut(s)	283, 424, 550
MaeI	CTAG	2 cut(s)	165, 300
MaeII	ACGT	2 cut(s)	566, 588
MaeIII	GTNAC	2 cut(s)	304, 567
MalI	GATC	1 cut(s)	205
MboI	GATC	1 cut(s)	203
MboII	GAAGA	6 cut(s)	187, 428, 592, 595, 601, 604
MflI	RGATCY	1 cut(s)	203
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	2 cut(s)	15, 381
MlyI	GAGTC	1 cut(s)	463
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	9 cut(s)	43, 125, 217, 307, 352, 355, 450, 510, 617
MroXI	GAANNNNTTC	1 cut(s)	284
MseI	TTAA	1 cut(s)	243
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	2 cut(s)	32, 538
Mva1269I	GAATGC	1 cut(s)	160
MvaI	CCWGG	2 cut(s)	32, 538
MwoI	GCNNNNNNNGC	3 cut(s)	157, 434, 547
NdeII	GATC	1 cut(s)	203
NlaIV	GGNNCC	3 cut(s)	6, 281, 452
NmuCI	GTSAC	2 cut(s)	304, 567
PcsI	WCGNNNNNNNCGW	2 cut(s)	572, 594
PctI	GAATGC	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	311
PkrI	GCNGC	2 cut(s)	227, 430
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
Psp124BI	GAGCTC	1 cut(s)	216
Psp6I	CCWGG	2 cut(s)	30, 536
PspGI	CCWGG	2 cut(s)	30, 536
PspN4I	GGNNCC	3 cut(s)	6, 281, 452
PsuI	RGATCY	1 cut(s)	203
SacI	GAGCTC	1 cut(s)	216
SalI	GTCGAC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	2 cut(s)	226, 429
Sau3AI	GATC	1 cut(s)	203
SchI	GAGTC	1 cut(s)	463
ScrFI	CCNGG	2 cut(s)	32, 538
SduI	GDGCHC	1 cut(s)	216
SfaNI	GCATC	3 cut(s)	283, 424, 550
SgrDI	CGTCGACG	1 cut(s)	119
Sse9I	AATT	2 cut(s)	15, 381
SsiI	CCGC	1 cut(s)	618
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	2 cut(s)	165, 300
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	2 cut(s)	30, 536
TaaI	ACNGT	2 cut(s)	481, 509
TaiI	ACGT	2 cut(s)	569, 591
TaqI	TCGA	1 cut(s)	120
TasI	AATT	2 cut(s)	15, 381
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	2 cut(s)	313, 382
TseFI	GTSAC	2 cut(s)	304, 567
TseI	GCWGC	2 cut(s)	225, 428
Tsp45I	GTSAC	2 cut(s)	304, 567
TspDTI	ATGAA	2 cut(s)	277, 438
TspRI	CASTG	2 cut(s)	313, 382
XmiI	GTMKAC	1 cut(s)	120
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	2 cut(s)	165, 300
ZraI	GACGTC	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.