Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002318

Physical Location & Seq

Genomic Coordinates Forward (+)

5684634 .. 5688574

Gene Structure 3941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G084300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGAAGAAGAGCAGATGGTCACAGTCCAACCCAATTCCGCTTCTAACAAAAAGGCCAGCCGGAGAAGAAGAAGAAGAAGAACCTAGTTGTCACAGCAAAAGGGAACTGCAATTGGTCACCACCTCACCCTTCAGACTCCCCGATGGTTGGTACGTTGAGGAAAAGCGCCGTCCCCTTAGCAATACTTCCCACCCCGGAAAAATCGACAGGTATTACATTGAGCCTGGCACGGGACTGAAGTTTCGCTCGCTGTCAGCTGTACAGAGATACCTAACAGAAGGGAAAATCGAAACACGTACCAAGAATTCAGAACCAGGCAATGAATGGAATAAGCAAATTACACCACGCACCACCTGGAGCACTTCATCCTTTATACTACCTGATGGTTGGGAAGTTGAGGAAAAGCCACGAAACAATTCTTGTATCATAGACAAGACCTATATTGAGCCAGGGACTGGACAGCGGTTCCGTTCTTTAATATCTGTTGAGAGATACCTAACAGGAGCAAATGAAGATACACCTCTCAAGGCATTGGTACCTGCCAATAAGTCTGGTCTTTCTCCTGGCTCAGGCCGCCAGAAGATGAAAAGTTTGGGTGAGATACAGTCCCAGAAAGTTGTCTCTAGTTCTCTGACGAGAAATATTACTGGTGCGAACGATAGACCATCCAAGCTCAATTTCGGCAGACCACCAGCAAAAGTGAAATGGGTCCTCGGAGGTCCGGGGGGGTGTATGTGGAACCCCTTCATGGACGAATCAAAGGTCCCTGATTCTGTATTACAGAAGTGGTCCAAAACTTTCGTTTCATCCCTCTATGGTGGAAACATTGGTGCACCAAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0008327 GO:0009628 GO:0009893 GO:0010369 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0098687 GO:1901265 GO:1901363 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

282

Amino Acids

31.42

Weight (kDa)

9.6

Isoelectric Point (pI)

70.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59800
fragaria_vesca	FvH4_3g35002 FvH4_3g35002 FvH4_3g35010
malus_domestica	MD03G1099400.v1.1 MD03G1099500.v1.1 MD11G1113700.v1.1
prunus_persica	Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084300_v2.0.a1 Prupe.6G084500_v2.0.a1
pyrus_communis	pycom03g08180 pycom03g08190 pycom11g09570
rosa_chinensis	RchiOBHm_Chr5g0062921 RchiOBHm_Chr5g0062931
rosa_laevigata	RLG00000009507 RLG00000035590 RLG00000035591
rosa_multiflora	Rmu_co7996734.1_g000001 Rmu_sc0000192.1_g000027 Rmu_sc0001738.1_g000035 Rmu_sc0003303.1_g000011 Rmu_sc0006171.1_g000008 Rmu_sc0010322.1_g000002 Rmu_sc0010322.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017700 Rroxscaffold_1G00017710
rosa_rugosa	Rorug05G0352700 Rorug05G0352700 Rorug05G0352800 Rorug05G0352900
rosa_samantha	Rh5AG413800 Rh5AG413900 Rh5BG428000 Rh5BG428100 Rh5CG451600 Rh5CG451700 Rh5DG441700 Rh5DG441800
rosa_wichuraiana	Rw5G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	547
Acc65I	GGTACC	1 cut(s)	535
AccB1I	GGYRCC	1 cut(s)	535
AccB7I	CCANNNNNTGG	1 cut(s)	455
AciI	CCGC	3 cut(s)	38, 463, 574
AcsI	RAATTY	1 cut(s)	304
AcuI	CTGAAG	2 cut(s)	115, 257
AfaI	GTAC	4 cut(s)	152, 261, 298, 537
AfiI	CCNNNNNNNGG	5 cut(s)	147, 230, 455, 569, 748
AflIII	ACRYGT	1 cut(s)	293
AjnI	CCWGG	5 cut(s)	223, 313, 353, 448, 562
AjuI	GAANNNNNNNTTGG	2 cut(s)	662, 694
AluBI	AGCT	2 cut(s)	257, 673
AluI	AGCT	2 cut(s)	257, 673
Alw21I	GWGCWC	2 cut(s)	362, 835
Alw26I	GTCTC	1 cut(s)	625
Alw44I	GTGCAC	1 cut(s)	831
AlwNI	CAGNNNCTG	1 cut(s)	455
AoxI	GGCC	2 cut(s)	53, 571
ApaLI	GTGCAC	1 cut(s)	831
ApoI	RAATTY	1 cut(s)	304
ArsI	GACNNNNNNTTYG	4 cut(s)	225, 257, 747, 779
Asp700I	GAANNNNTTC	2 cut(s)	415, 743
Asp718I	GGTACC	1 cut(s)	535
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	4 cut(s)	709, 719, 763, 789
AsuC2I	CCSGG	2 cut(s)	195, 723
AsuHPI	GGTGA	3 cut(s)	109, 117, 608
AvaII	GGWCC	4 cut(s)	709, 719, 763, 789
BaeGI	GKGCMC	1 cut(s)	835
BanI	GGYRCC	1 cut(s)	535
Bbv12I	GWGCWC	2 cut(s)	362, 835
BccI	CCATC	4 cut(s)	9, 137, 377, 673
BceAI	ACGGC	1 cut(s)	153
BciT130I	CCWGG	5 cut(s)	225, 315, 355, 450, 564
BcnI	CCSGG	2 cut(s)	195, 723
BcoDI	GTCTC	1 cut(s)	625
BfaI	CTAG	2 cut(s)	84, 624
BfoI	RGCGCY	1 cut(s)	169
BfuAI	ACCTGC	1 cut(s)	547
BisI	GCNGC	1 cut(s)	574
BlsI	GCNGC	1 cut(s)	575
Bme1390I	CCNGG	7 cut(s)	195, 225, 315, 355, 450, 564, 723
Bme18I	GGWCC	4 cut(s)	709, 719, 763, 789
BmgT120I	GGNCC	4 cut(s)	709, 719, 763, 789
BmiI	GGNNCC	5 cut(s)	467, 537, 710, 740, 765
BmrFI	CCNGG	7 cut(s)	195, 225, 315, 355, 450, 564, 723
BpmI	CTGGAG	1 cut(s)	376
Bpu10I	CCTNAGC	2 cut(s)	176, 568
BpuEI	CTTGAG	1 cut(s)	509
BpuMI	CCSGG	2 cut(s)	195, 723
BsaAI	YACGTR	1 cut(s)	296
BsaJI	CCNNGG	4 cut(s)	193, 449, 712, 722
Bsc4I	CCNNNNNNNGG	5 cut(s)	147, 230, 455, 569, 748
Bse1I	ACTGG	2 cut(s)	460, 652
Bse3DI	GCAATG	1 cut(s)	325
BseBI	CCWGG	5 cut(s)	225, 315, 355, 450, 564
BseDI	CCNNGG	4 cut(s)	193, 449, 712, 722
BseGI	GGATG	3 cut(s)	365, 665, 806
BseLI	CCNNNNNNNGG	5 cut(s)	147, 230, 455, 569, 748
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	1 cut(s)	582
BseNI	ACTGG	2 cut(s)	460, 652
BseSI	GKGCMC	1 cut(s)	835
BshFI	GGCC	2 cut(s)	55, 573
BshNI	GGYRCC	1 cut(s)	535
BsiHKAI	GWGCWC	2 cut(s)	362, 835
BsiSI	CCGG	3 cut(s)	60, 195, 722
BslFI	GGGAC	5 cut(s)	156, 246, 466, 592, 749
BslI	CCNNNNNNNGG	5 cut(s)	147, 230, 455, 569, 748
BsmAI	GTCTC	1 cut(s)	625
BsmFI	GGGAC	5 cut(s)	156, 246, 466, 592, 749
BsnI	GGCC	2 cut(s)	55, 573
Bsp1286I	GDGCHC	2 cut(s)	362, 835
Bsp1407I	TGTACA	1 cut(s)	259
BspACI	CCGC	3 cut(s)	38, 463, 574
BspANI	GGCC	2 cut(s)	55, 573
BspCNI	CTCAG	1 cut(s)	581
BspLI	GGNNCC	5 cut(s)	467, 537, 710, 740, 765
BspMI	ACCTGC	1 cut(s)	547
BspQI	GCTCTTC	1 cut(s)	2
BspT107I	GGYRCC	1 cut(s)	535
BsrDI	GCAATG	1 cut(s)	325
BsrGI	TGTACA	1 cut(s)	259
BsrI	ACTGG	2 cut(s)	460, 652
BssECI	CCNNGG	4 cut(s)	193, 449, 712, 722
Bst2UI	CCWGG	5 cut(s)	225, 315, 355, 450, 564
Bst4CI	ACNGT	2 cut(s)	24, 606
Bst6I	CTCTTC	1 cut(s)	2
BstAUI	TGTACA	1 cut(s)	259
BstBAI	YACGTR	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	57, 248
BstDEI	CTNAG	2 cut(s)	176, 568
BstEII	GGTNACC	1 cut(s)	115
BstENI	CCTNNNNNAGG	1 cut(s)	567
BstF5I	GGATG	3 cut(s)	365, 665, 806
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	168
BstMAI	GTCTC	1 cut(s)	625
BstMWI	GCNNNNNNNGC	1 cut(s)	573
BstNI	CCWGG	5 cut(s)	225, 315, 355, 450, 564
BstPI	GGTNACC	1 cut(s)	115
BstSCI	CCNGG	7 cut(s)	193, 223, 313, 353, 448, 562, 721
BstSLI	GKGCMC	1 cut(s)	835
BsuRI	GGCC	2 cut(s)	55, 573
BtsCI	GGATG	3 cut(s)	365, 665, 806
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	2 cut(s)	57, 248
CaiI	CAGNNNCTG	1 cut(s)	455
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	4 cut(s)	709, 719, 763, 789
Csp6I	GTAC	4 cut(s)	151, 260, 297, 536
CviAII	CATG	1 cut(s)	748
CviJI	RGCY	9 cut(s)	55, 59, 223, 257, 406, 448, 567, 573, 673
CviKI_1	RGCY	9 cut(s)	55, 59, 223, 257, 406, 448, 567, 573, 673
CviQI	GTAC	4 cut(s)	151, 260, 297, 536
DdeI	CTNAG	2 cut(s)	176, 568
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco47I	GGWCC	4 cut(s)	709, 719, 763, 789
Eco57I	CTGAAG	2 cut(s)	115, 257
Eco91I	GGTNACC	1 cut(s)	115
EcoNI	CCTNNNNNAGG	1 cut(s)	567
EcoO109I	RGGNCCY	2 cut(s)	709, 763
EcoO65I	GGTNACC	1 cut(s)	115
EcoRI	GAATTC	1 cut(s)	304
EcoRII	CCWGG	5 cut(s)	223, 313, 353, 448, 562
FaeI	CATG	1 cut(s)	751
FaiI	YATR	6 cut(s)	374, 428, 441, 734, 749, 816
FaqI	GGGAC	5 cut(s)	156, 246, 466, 592, 749
FatI	CATG	1 cut(s)	747
Fnu4HI	GCNGC	1 cut(s)	574
FokI	GGATG	3 cut(s)	352, 652, 793
Fsp4HI	GCNGC	1 cut(s)	574
FspBI	CTAG	2 cut(s)	84, 624
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	1 cut(s)	574
GsuI	CTGGAG	1 cut(s)	376
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	2 cut(s)	55, 573
HapII	CCGG	3 cut(s)	60, 195, 722
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	1 cut(s)	751
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	3 cut(s)	135, 755, 770
HpaII	CCGG	3 cut(s)	60, 195, 722
HphI	GGTGA	3 cut(s)	109, 117, 608
Hpy166II	GTNNAC	1 cut(s)	833
Hpy188I	TCNGA	4 cut(s)	134, 310, 633, 716
Hpy188III	TCNNGA	1 cut(s)	843
Hpy8I	GTNNAC	1 cut(s)	833
HpyAV	CCTTC	3 cut(s)	139, 272, 754
HpyCH4III	ACNGT	2 cut(s)	24, 606
HpyCH4IV	ACGT	2 cut(s)	153, 295
HpyCH4V	TGCA	2 cut(s)	109, 833
HpyF10VI	GCNNNNNNNGC	1 cut(s)	573
HpyF3I	CTNAG	2 cut(s)	176, 568
HpySE526I	ACGT	2 cut(s)	153, 295
Hsp92II	CATG	1 cut(s)	751
HspAI	GCGC	1 cut(s)	166
KpnI	GGTACC	1 cut(s)	539
LguI	GCTCTTC	1 cut(s)	2
LmnI	GCTCC	2 cut(s)	357, 503
MaeI	CTAG	2 cut(s)	84, 624
MaeII	ACGT	2 cut(s)	153, 295
MaeIII	GTNAC	3 cut(s)	18, 89, 115
MboII	GAAGA	9 cut(s)	16, 19, 77, 80, 83, 86, 89, 524, 592
MfeI	CAATTG	1 cut(s)	110
MhlI	GDGCHC	2 cut(s)	362, 835
MluCI	AATT	6 cut(s)	33, 110, 304, 336, 415, 676
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	7 cut(s)	133, 151, 391, 531, 710, 722, 821
MroXI	GAANNNNTTC	2 cut(s)	415, 743
MseI	TTAA	1 cut(s)	476
MspA1I	CMGCKG	2 cut(s)	257, 463
MspI	CCGG	3 cut(s)	60, 195, 722
MspR9I	CCNGG	7 cut(s)	195, 225, 315, 355, 450, 564, 723
MunI	CAATTG	1 cut(s)	110
MvaI	CCWGG	5 cut(s)	225, 315, 355, 450, 564
MwoI	GCNNNNNNNGC	1 cut(s)	573
NciI	CCSGG	2 cut(s)	195, 723
NlaIII	CATG	1 cut(s)	751
NlaIV	GGNNCC	5 cut(s)	467, 537, 710, 740, 765
NmuCI	GTSAC	3 cut(s)	18, 89, 115
PciSI	GCTCTTC	1 cut(s)	2
PdmI	GAANNNNTTC	2 cut(s)	415, 743
PfeI	GAWTC	2 cut(s)	755, 770
PflMI	CCANNNNNTGG	1 cut(s)	455
PkrI	GCNGC	1 cut(s)	575
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
Ppu21I	YACGTR	1 cut(s)	296
PpuMI	RGGWCCY	2 cut(s)	709, 763
Psp5II	RGGWCCY	2 cut(s)	709, 763
Psp6I	CCWGG	5 cut(s)	223, 313, 353, 448, 562
PspEI	GGTNACC	1 cut(s)	115
PspGI	CCWGG	5 cut(s)	223, 313, 353, 448, 562
PspN4I	GGNNCC	5 cut(s)	467, 537, 710, 740, 765
PspPI	GGNCC	4 cut(s)	709, 719, 763, 789
PspPPI	RGGWCCY	2 cut(s)	709, 763
PstNI	CAGNNNCTG	1 cut(s)	455
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	4 cut(s)	152, 261, 298, 537
RsaNI	GTAC	4 cut(s)	151, 260, 297, 536
SapI	GCTCTTC	1 cut(s)	2
SaqAI	TTAA	1 cut(s)	476
SatI	GCNGC	1 cut(s)	574
Sau96I	GGNCC	4 cut(s)	709, 719, 763, 789
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	7 cut(s)	195, 225, 315, 355, 450, 564, 723
SduI	GDGCHC	2 cut(s)	362, 835
SinI	GGWCC	4 cut(s)	709, 719, 763, 789
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	6 cut(s)	33, 110, 304, 336, 415, 676
SsiI	CCGC	3 cut(s)	38, 463, 574
SspI	AATATT	1 cut(s)	643
SspMI	CTAG	2 cut(s)	84, 624
StyD4I	CCNGG	7 cut(s)	193, 223, 313, 353, 448, 562, 721
TaaI	ACNGT	2 cut(s)	24, 606
TaiI	ACGT	2 cut(s)	156, 298
TaqI	TCGA	2 cut(s)	204, 288
TasI	AATT	6 cut(s)	33, 110, 304, 336, 415, 676
TatI	WGTACW	1 cut(s)	259
TauI	GCSGC	1 cut(s)	576
TfiI	GAWTC	2 cut(s)	755, 770
Tru1I	TTAA	1 cut(s)	476
Tru9I	TTAA	1 cut(s)	476
TseFI	GTSAC	3 cut(s)	18, 89, 115
Tsp45I	GTSAC	3 cut(s)	18, 89, 115
TspDTI	ATGAA	7 cut(s)	17, 336, 354, 525, 599, 736, 795
TspGWI	ACGGA	1 cut(s)	458
Van91I	CCANNNNNTGG	1 cut(s)	455
VneI	GTGCAC	1 cut(s)	831
VpaK11BI	GGWCC	4 cut(s)	709, 719, 763, 789
XagI	CCTNNNNNAGG	1 cut(s)	567
XapI	RAATTY	1 cut(s)	304
XcmI	CCANNNNNNNNNTGG	2 cut(s)	321, 351
XmnI	GAANNNNTTC	2 cut(s)	415, 743
XspI	CTAG	2 cut(s)	84, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.