Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002318

Physical Location & Seq

Genomic Coordinates Reverse (-)

68755642 .. 68766522

Gene Structure 10881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G038880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1836 bp

ATGAAGAGGAGGAGAAGATCATCACCACCGGAGCCACTTCCGCTTCAGGCATTGACGCCGGTGAAAGAAGAAGACGACCCCAGAACAAATTGGCAGTTGGTGACCGCTGCTTCTGAGCGCTACGGACTCCCAGATGGTTGGTGCGTTGAGGAAATCCCCCGTCGCTTTAGCCGCTTCCGTCCCGCTCGAGTTGACAGGTATTTCATTGAGCCTGACACGGGACAGAAGTTTCGTTCACTAGTAGCTGTCCACAGATATCTAACAGGCGGACAAGTTGATACACATGCCACTATGCAATTTAAACCACACACCATGAGGTGTAGTTCTTCCTTTGTACTACCAGATGGTTGGGAAATTGAGGAAAAGCCACGAAAGAATACTAATACTGGTCACAGTGACAAGTATTATATTGAGCCAGGAACTGGAAGGCGGTTCCGTTCTTTAGTAGCTGTTGAGAGATACCTAACAGAAGAAAATGAACACACTCCACTTCAGGCATTGATACCTGCCAATAAGTTGATTCTTTCGAGTGGATCCAGCAGCCAGAAGAAAAAGATTCGGTCCCTGAAATTTGTTTCTAAGAATTCATCACATTCAAACGTATGTAATAGCACACTCAATGCATCAAGGCTCAACACCTATTCTGCAGGGAAGCATTTTAGTAGTCCCAAGAAAGAAATACTCCCAGAAATCAGTAGACCTTCGCAGCTCAATATTAGCAGCGCACCAACAAAAGTTAAATGGGTCCTCGTTGGTCCTGGGGGCAATAATTGGAACCCCTTCATGGATGATTCTAGAGTTGCCGATTCTGTAAAGCAAAAGTGGTCTGAGATTTTCAAATCATCCATCTATGACGAAAACATTAAGGCACCGTTTATTGCTCTGTTTGTTCCATTGGTACCAAATGATATAGAGGAATCAAGCCCAATTAGTGTCAGCACCCAAATCATGAACACACCCAAATCATCATCGCCGGAGCCAATTCCACTGATGAAGGTGACTCCGGCAAAGGAAGAAAACCAACCCAGAAGCTCTAGGCAACTGCAATTGGTCACTGCTTCGCCCTTTGGACTCCCAGATGGTTGGTCTGTTGAGGAAAGGCCCCGTCGCTCCAGCCAAACAGTTGACAAGTATTACATTGAGCTTGACACGGGACTGAAATTTCGTTCACTGGCAGCTGCCCGCAGATACCTAACAGATGGGCAAATTGATACACGTACCAGGAGAGAAAAATCAGGCAGTCAAAGCACAATGCAATCCTTCAAGAGAAGTTCTTCCTTCACACTACCAGATGGTTGGGAAATTGAGGAAAGGCCGCGAAAGAATACTAATTCTAGTCATAGTGACAAGTATTATATTGAGCCAGGGACTGGAAAGCGGTTTCGTTCTTTAATATCTGTTGAGAGATACCTAACAGAAGAAATTGAACACACTCCACTTCAGGCATTGATGCCTGCCAATAAGTCCAATCTTTCAAGTAGTTCTGACAGTCAGAAGAAGAAAATCCGGTCCCTGGAATTAATTTCTAAGCATTCACCATGTTCGAATGAATGTTATAATAGCACACTTGATGCAATGAGGCTCAACACTTATTCTACACCTGCAAAGCATTCTAGTTCTCCGAAGAAAAGTATTTCTGGGGAGACGAGTAGACCCTCAGAGCTCACTAATGGCAGCCCACCAACAAAAGTTAAATGGGTTCTCGCCGGTCCAGGGGGGAATATGTGGAACCCCTTCATAGATGACTCTGGGGTCGCTGATTCTGTAAAGCAAATGTGGTCTGAGATTTTCAAGTCATCAATCTATAACGAAAACGAAAAGGCACCAAGGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0008150 GO:0008327 GO:0009628 GO:0009893 GO:0010369 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0036094 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0060255 GO:0065007 GO:0080090 GO:0080167 GO:0097159 GO:0098687 GO:1901265 GO:1901363 GO:1901535 GO:1901537

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

611

Amino Acids

68.99

Weight (kDa)

9.57

Isoelectric Point (pI)

70.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBD	PF01429	40 - 91	4.2e-06	Methyl-CpG binding domain
MBD	PF01429	111 - 162	1.8e-09	Methyl-CpG binding domain
MBD	PF01429	423 - 478	4.9e-10	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59800
fragaria_vesca	FvH4_3g35002 FvH4_3g35002 FvH4_3g35010
malus_domestica	MD03G1099400.v1.1 MD03G1099500.v1.1 MD11G1113700.v1.1
prunus_persica	Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084200_v2.0.a1 Prupe.6G084300_v2.0.a1 Prupe.6G084500_v2.0.a1
pyrus_communis	pycom03g08180 pycom03g08190 pycom11g09570
rosa_chinensis	RchiOBHm_Chr5g0062921 RchiOBHm_Chr5g0062931
rosa_laevigata	RLG00000009507 RLG00000035590 RLG00000035591
rosa_multiflora	Rmu_co7996734.1_g000001 Rmu_sc0000192.1_g000027 Rmu_sc0001738.1_g000035 Rmu_sc0003303.1_g000011 Rmu_sc0006171.1_g000008 Rmu_sc0010322.1_g000002 Rmu_sc0010322.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017700 Rroxscaffold_1G00017710
rosa_rugosa	Rorug05G0352700 Rorug05G0352700 Rorug05G0352800 Rorug05G0352900
rosa_samantha	Rh5AG413800 Rh5AG413900 Rh5BG428000 Rh5BG428100 Rh5CG451600 Rh5CG451700 Rh5DG441700 Rh5DG441800
rosa_wichuraiana	Rw5G038880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1557
AarI	CACCTGC	1 cut(s)	1609
AasI	GACNNNNNNGTC	1 cut(s)	1751
Acc36I	ACCTGC	2 cut(s)	514, 1609
Acc65I	GGTACC	1 cut(s)	898
AccB1I	GGYRCC	3 cut(s)	868, 898, 1822
AccB7I	CCANNNNNTGG	2 cut(s)	422, 1370
AccBSI	CCGCTC	1 cut(s)	185
AccI	GTMKAC	2 cut(s)	697, 1651
AccII	CGCG	1 cut(s)	1318
AciI	CCGC	9 cut(s)	41, 105, 172, 183, 267, 430, 1183, 1316, 1378
AclWI	GGATC	2 cut(s)	528, 541
AcsI	RAATTY	3 cut(s)	569, 583, 1160
AcuI	CTGAAG	3 cut(s)	29, 476, 1424
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	3 cut(s)	336, 900, 1219
AfeI	AGCGCT	1 cut(s)	119
AfiI	CCNNNNNNNGG	6 cut(s)	218, 422, 784, 1370, 1513, 1713
AflIII	ACRYGT	1 cut(s)	1214
AgsI	TTSAA	6 cut(s)	597, 838, 1264, 1427, 1476, 1792
AhlI	ACTAGT	1 cut(s)	238
AjnI	CCWGG	6 cut(s)	415, 757, 1220, 1363, 1512, 1711
AluBI	AGCT	7 cut(s)	245, 449, 709, 1032, 1144, 1178, 1663
AluI	AGCT	7 cut(s)	245, 449, 709, 1032, 1144, 1178, 1663
Alw21I	GWGCWC	1 cut(s)	1665
Alw26I	GTCTC	1 cut(s)	1637
AlwI	GGATC	2 cut(s)	528, 541
AlwNI	CAGNNNCTG	2 cut(s)	422, 1370
Ama87I	CYCGRG	1 cut(s)	186
Aor51HI	AGCGCT	1 cut(s)	119
AoxI	GGCC	2 cut(s)	1100, 1313
ApeKI	GCWGC	7 cut(s)	107, 540, 706, 720, 1175, 1178, 1674
ApoI	RAATTY	3 cut(s)	569, 583, 1160
ArsI	GACNNNNNNTTYG	4 cut(s)	213, 245, 1146, 1178
AseI	ATTAAT	1 cut(s)	1520
Asp700I	GAANNNNTTC	3 cut(s)	779, 1273, 1733
Asp718I	GGTACC	1 cut(s)	898
AspLEI	GCGC	2 cut(s)	120, 725
AspS9I	GGNCC	6 cut(s)	561, 745, 755, 1101, 1509, 1709
AsuHPI	GGTGA	5 cut(s)	15, 73, 112, 1009, 1527
AsuII	TTCGAA	1 cut(s)	1544
AvaI	CYCGRG	1 cut(s)	186
AvaII	GGWCC	5 cut(s)	561, 745, 755, 1509, 1709
BamHI	GGATCC	1 cut(s)	533
BanI	GGYRCC	3 cut(s)	868, 898, 1822
BanII	GRGCYC	1 cut(s)	1665
BbsI	GAAGAC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	1665
BbvI	GCAGC	7 cut(s)	94, 552, 718, 732, 1165, 1187, 1686
BccI	CCATC	6 cut(s)	128, 338, 854, 1073, 1193, 1286
BciT130I	CCWGG	6 cut(s)	417, 759, 1222, 1365, 1514, 1713
BcoDI	GTCTC	1 cut(s)	1637
BcuI	ACTAGT	1 cut(s)	238
BfaI	CTAG	5 cut(s)	239, 795, 1035, 1335, 1614
BfmI	CTRYAG	1 cut(s)	645
BfoI	RGCGCY	1 cut(s)	121
BfuAI	ACCTGC	2 cut(s)	514, 1609
BisI	GCNGC	9 cut(s)	108, 172, 541, 707, 721, 1176, 1179, 1316, 1675
BlsI	GCNGC	9 cut(s)	109, 173, 542, 708, 722, 1177, 1180, 1317, 1676
Bme1390I	CCNGG	6 cut(s)	417, 759, 1222, 1365, 1514, 1713
Bme18I	GGWCC	5 cut(s)	561, 745, 755, 1509, 1709
BmeT110I	CYCGRG	1 cut(s)	186
BmgT120I	GGNCC	6 cut(s)	561, 745, 755, 1101, 1509, 1709
BmrFI	CCNGG	6 cut(s)	417, 759, 1222, 1365, 1514, 1713
BmsI	GCATC	3 cut(s)	632, 1440, 1561
BpiI	GAAGAC	1 cut(s)	78
BpmI	CTGGAG	1 cut(s)	1096
Bpu14I	TTCGAA	1 cut(s)	1544
BsaAI	YACGTR	1 cut(s)	1217
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	5 cut(s)	758, 1364, 1512, 1712, 1826
BsaWI	WCCGGW	2 cut(s)	28, 1506
Bsc4I	CCNNNNNNNGG	6 cut(s)	218, 422, 784, 1370, 1513, 1713
Bse118I	RCCGGY	2 cut(s)	58, 1706
Bse1I	ACTGG	4 cut(s)	391, 427, 1176, 1375
Bse3DI	GCAATG	1 cut(s)	1581
BseBI	CCWGG	6 cut(s)	417, 759, 1222, 1365, 1514, 1713
BseDI	CCNNGG	5 cut(s)	758, 1364, 1512, 1712, 1826
BseGI	GGATG	2 cut(s)	793, 842
BseLI	CCNNNNNNNGG	6 cut(s)	218, 422, 784, 1370, 1513, 1713
BseMI	GCAATG	1 cut(s)	1581
BseMII	CTCAG	4 cut(s)	105, 819, 1671, 1773
BseNI	ACTGG	4 cut(s)	391, 427, 1176, 1375
BseRI	GAGGAG	2 cut(s)	22, 25
BseXI	GCAGC	7 cut(s)	94, 552, 718, 732, 1165, 1187, 1686
Bsh1236I	CGCG	1 cut(s)	1318
BshFI	GGCC	2 cut(s)	1102, 1315
BshNI	GGYRCC	3 cut(s)	868, 898, 1822
BsiHKAI	GWGCWC	1 cut(s)	1665
BsiHKCI	CYCGRG	1 cut(s)	186
BsiSI	CCGG	6 cut(s)	29, 59, 974, 1004, 1507, 1707
BslFI	GGGAC	7 cut(s)	165, 234, 547, 651, 1167, 1381, 1495
BslI	CCNNNNNNNGG	6 cut(s)	218, 422, 784, 1370, 1513, 1713
BsmAI	GTCTC	1 cut(s)	1637
BsmBI	CGTCTC	1 cut(s)	1637
BsmFI	GGGAC	7 cut(s)	165, 234, 547, 651, 1167, 1381, 1495
BsmI	GAATGC	2 cut(s)	1531, 1609
BsnI	GGCC	2 cut(s)	1102, 1315
BsoBI	CYCGRG	1 cut(s)	186
Bsp119I	TTCGAA	1 cut(s)	1544
Bsp1286I	GDGCHC	1 cut(s)	1665
Bsp143I	GATC	2 cut(s)	17, 533
BspACI	CCGC	9 cut(s)	41, 105, 172, 183, 267, 430, 1183, 1316, 1378
BspANI	GGCC	2 cut(s)	1102, 1315
BspCNI	CTCAG	4 cut(s)	106, 820, 1670, 1774
BspFNI	CGCG	1 cut(s)	1318
BspHI	TCATGA	1 cut(s)	948
BspMAI	CTGCAG	1 cut(s)	649
BspMI	ACCTGC	2 cut(s)	514, 1609
BspPI	GGATC	2 cut(s)	528, 541
BspT104I	TTCGAA	1 cut(s)	1544
BspT107I	GGYRCC	3 cut(s)	868, 898, 1822
BsrBI	CCGCTC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	1581
BsrFI	RCCGGY	2 cut(s)	58, 1706
BsrI	ACTGG	4 cut(s)	391, 427, 1176, 1375
BssAI	RCCGGY	2 cut(s)	58, 1706
BssECI	CCNNGG	5 cut(s)	758, 1364, 1512, 1712, 1826
BssMI	GATC	2 cut(s)	17, 533
BssNI	GRCGYC	1 cut(s)	56
BssT1I	CCWWGG	1 cut(s)	1826
Bst2UI	CCWGG	6 cut(s)	417, 759, 1222, 1365, 1514, 1713
Bst4CI	ACNGT	4 cut(s)	395, 873, 1123, 1490
BstACI	GRCGYC	1 cut(s)	56
BstBAI	YACGTR	1 cut(s)	1217
BstBI	TTCGAA	1 cut(s)	1544
BstC8I	GCNNGC	2 cut(s)	1183, 1455
BstDEI	CTNAG	6 cut(s)	114, 579, 828, 1527, 1657, 1782
BstEII	GGTNACC	1 cut(s)	100
BstF5I	GGATG	2 cut(s)	793, 842
BstFNI	CGCG	1 cut(s)	1318
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	2 cut(s)	120, 725
BstKTI	GATC	2 cut(s)	20, 536
BstMAI	GTCTC	1 cut(s)	1637
BstMBI	GATC	2 cut(s)	17, 533
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 171, 1245
BstNI	CCWGG	6 cut(s)	417, 759, 1222, 1365, 1514, 1713
BstNSI	RCATGY	1 cut(s)	287
BstPI	GGTNACC	1 cut(s)	100
BstSCI	CCNGG	6 cut(s)	415, 757, 1220, 1363, 1512, 1711
BstSFI	CTRYAG	1 cut(s)	645
BstUI	CGCG	1 cut(s)	1318
BstV1I	GCAGC	7 cut(s)	94, 552, 718, 732, 1165, 1187, 1686
BstV2I	GAAGAC	1 cut(s)	78
BstX2I	RGATCY	1 cut(s)	533
BstXI	CCANNNNNNTGG	4 cut(s)	138, 348, 1083, 1296
BstYI	RGATCY	1 cut(s)	533
BsuRI	GGCC	2 cut(s)	1102, 1315
BtgZI	GCGATG	1 cut(s)	954
BtsCI	GGATG	2 cut(s)	793, 842
BtsI	GCAGTG	1 cut(s)	1053
BtsIMutI	CAGTG	4 cut(s)	400, 986, 1053, 1169
BveI	ACCTGC	2 cut(s)	514, 1609
Cac8I	GCNNGC	2 cut(s)	1183, 1455
CaiI	CAGNNNCTG	2 cut(s)	422, 1370
CciI	TCATGA	1 cut(s)	948
CfoI	GCGC	2 cut(s)	120, 725
Cfr10I	RCCGGY	2 cut(s)	58, 1706
Cfr13I	GGNCC	6 cut(s)	561, 745, 755, 1101, 1509, 1709
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	3 cut(s)	335, 899, 1218
CviAII	CATG	5 cut(s)	284, 313, 784, 949, 1539
CviQI	GTAC	3 cut(s)	335, 899, 1218
DdeI	CTNAG	6 cut(s)	114, 579, 828, 1527, 1657, 1782
DpnI	GATC	2 cut(s)	19, 535
DpnII	GATC	2 cut(s)	17, 533
DraI	TTTAAA	1 cut(s)	301
DrdI	GACNNNNNNGTC	1 cut(s)	1751
DseDI	GACNNNNNNGTC	1 cut(s)	1751
EciI	GGCGGA	1 cut(s)	282
Ecl136II	GAGCTC	1 cut(s)	1663
Eco130I	CCWWGG	1 cut(s)	1826
Eco24I	GRGCYC	1 cut(s)	1665
Eco32I	GATATC	1 cut(s)	257
Eco47I	GGWCC	5 cut(s)	561, 745, 755, 1509, 1709
Eco47III	AGCGCT	1 cut(s)	119
Eco53kI	GAGCTC	1 cut(s)	1663
Eco57I	CTGAAG	3 cut(s)	29, 476, 1424
Eco88I	CYCGRG	1 cut(s)	186
Eco91I	GGTNACC	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	1663
EcoO109I	RGGNCCY	2 cut(s)	745, 1101
EcoO65I	GGTNACC	1 cut(s)	100
EcoRI	GAATTC	1 cut(s)	583
EcoRII	CCWGG	6 cut(s)	415, 757, 1220, 1363, 1512, 1711
EcoRV	GATATC	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	1826
EcoT22I	ATGCAT	1 cut(s)	625
EcoT38I	GRGCYC	1 cut(s)	1665
ErhI	CCWWGG	1 cut(s)	1826
Esp3I	CGTCTC	1 cut(s)	1637
FaeI	CATG	5 cut(s)	287, 316, 787, 952, 1542
FaqI	GGGAC	7 cut(s)	165, 234, 547, 651, 1167, 1381, 1495
FatI	CATG	5 cut(s)	283, 312, 783, 948, 1538
FauI	CCCGC	2 cut(s)	190, 1190
FblI	GTMKAC	2 cut(s)	697, 1651
Fnu4HI	GCNGC	9 cut(s)	108, 172, 541, 707, 721, 1176, 1179, 1316, 1675
FokI	GGATG	2 cut(s)	800, 829
FriOI	GRGCYC	1 cut(s)	1665
Fsp4HI	GCNGC	9 cut(s)	108, 172, 541, 707, 721, 1176, 1179, 1316, 1675
FspBI	CTAG	5 cut(s)	239, 795, 1035, 1335, 1614
GlaI	GCGC	2 cut(s)	119, 724
GluI	GCNGC	9 cut(s)	108, 172, 541, 707, 721, 1176, 1179, 1316, 1675
GsuI	CTGGAG	1 cut(s)	1096
HaeII	RGCGCY	1 cut(s)	121
HaeIII	GGCC	2 cut(s)	1102, 1315
HapII	CCGG	6 cut(s)	29, 59, 974, 1004, 1507, 1707
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	2 cut(s)	120, 725
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	5 cut(s)	287, 316, 787, 952, 1542
Hin6I	GCGC	2 cut(s)	118, 723
HinP1I	GCGC	2 cut(s)	118, 723
HincII	GTYRAC	2 cut(s)	193, 1126
HindII	GTYRAC	2 cut(s)	193, 1126
HpaII	CCGG	6 cut(s)	29, 59, 974, 1004, 1507, 1707
HphI	GGTGA	5 cut(s)	15, 73, 112, 1009, 1527
Hpy166II	GTNNAC	7 cut(s)	193, 236, 250, 698, 1126, 1169, 1652
Hpy188I	TCNGA	7 cut(s)	115, 829, 1486, 1494, 1623, 1660, 1783
Hpy188III	TCNNGA	3 cut(s)	795, 949, 1264
Hpy8I	GTNNAC	7 cut(s)	193, 236, 250, 698, 1126, 1169, 1652
Hpy99I	CGWCG	2 cut(s)	165, 1110
HpyAV	CCTTC	7 cut(s)	420, 711, 790, 988, 1270, 1288, 1744
HpyCH4III	ACNGT	4 cut(s)	395, 873, 1123, 1490
HpyCH4IV	ACGT	2 cut(s)	600, 1216
HpyCH4V	TGCA	7 cut(s)	295, 623, 647, 1045, 1255, 1574, 1604
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 171, 1245
HpyF3I	CTNAG	6 cut(s)	114, 579, 828, 1527, 1657, 1782
HpySE526I	ACGT	2 cut(s)	600, 1216
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	5 cut(s)	287, 316, 787, 952, 1542
HspAI	GCGC	2 cut(s)	118, 723
KpnI	GGTACC	1 cut(s)	902
Kzo9I	GATC	2 cut(s)	17, 533
LmnI	GCTCC	3 cut(s)	31, 976, 1115
Lsp1109I	GCAGC	7 cut(s)	94, 552, 718, 732, 1165, 1187, 1686
LweI	GCATC	3 cut(s)	632, 1440, 1561
MaeI	CTAG	5 cut(s)	239, 795, 1035, 1335, 1614
MaeII	ACGT	2 cut(s)	600, 1216
MaeIII	GTNAC	6 cut(s)	100, 389, 395, 997, 1051, 1343
MalI	GATC	2 cut(s)	19, 535
MbiI	CCGCTC	1 cut(s)	185
MboI	GATC	2 cut(s)	17, 533
MfeI	CAATTG	1 cut(s)	1046
MflI	RGATCY	1 cut(s)	533
MhlI	GDGCHC	1 cut(s)	1665
MlyI	GAGTC	4 cut(s)	120, 994, 1065, 1739
Mph1103I	ATGCAT	1 cut(s)	625
MroXI	GAANNNNTTC	3 cut(s)	779, 1273, 1733
MseI	TTAA	7 cut(s)	300, 738, 864, 1391, 1520, 1692, 1834
MspA1I	CMGCKG	2 cut(s)	107, 1178
MspI	CCGG	6 cut(s)	29, 59, 974, 1004, 1507, 1707
MspR9I	CCNGG	6 cut(s)	417, 759, 1222, 1365, 1514, 1713
MunI	CAATTG	1 cut(s)	1046
Mva1269I	GAATGC	2 cut(s)	1531, 1609
MvaI	CCWGG	6 cut(s)	417, 759, 1222, 1365, 1514, 1713
MvnI	CGCG	1 cut(s)	1318
MwoI	GCNNNNNNNGC	3 cut(s)	40, 171, 1245
NdeII	GATC	2 cut(s)	17, 533
NlaIII	CATG	5 cut(s)	287, 316, 787, 952, 1542
NmuCI	GTSAC	6 cut(s)	100, 389, 395, 997, 1051, 1343
NsiI	ATGCAT	1 cut(s)	625
NspI	RCATGY	1 cut(s)	287
NspV	TTCGAA	1 cut(s)	1544
PaeR7I	CTCGAG	1 cut(s)	186
PagI	TCATGA	1 cut(s)	948
PaqCI	CACCTGC	1 cut(s)	1609
PctI	GAATGC	2 cut(s)	1531, 1609
PdmI	GAANNNNTTC	3 cut(s)	779, 1273, 1733
PfeI	GAWTC	6 cut(s)	520, 556, 791, 806, 917, 1760
PflMI	CCANNNNNTGG	2 cut(s)	422, 1370
PkrI	GCNGC	9 cut(s)	109, 173, 542, 708, 722, 1177, 1180, 1317, 1676
PleI	GAGTC	4 cut(s)	120, 994, 1065, 1739
PpsI	GAGTC	4 cut(s)	120, 994, 1065, 1739
Ppu21I	YACGTR	1 cut(s)	1217
PpuMI	RGGWCCY	1 cut(s)	745
PshBI	ATTAAT	1 cut(s)	1520
PsiI	TTATAA	1 cut(s)	1557
Psp124BI	GAGCTC	1 cut(s)	1665
Psp5II	RGGWCCY	1 cut(s)	745
Psp6I	CCWGG	6 cut(s)	415, 757, 1220, 1363, 1512, 1711
PspEI	GGTNACC	1 cut(s)	100
PspGI	CCWGG	6 cut(s)	415, 757, 1220, 1363, 1512, 1711
PspPI	GGNCC	6 cut(s)	561, 745, 755, 1101, 1509, 1709
PspPPI	RGGWCCY	1 cut(s)	745
PspXI	VCTCGAGB	1 cut(s)	186
PstI	CTGCAG	1 cut(s)	649
PstNI	CAGNNNCTG	2 cut(s)	422, 1370
PsuI	RGATCY	1 cut(s)	533
PvuII	CAGCTG	1 cut(s)	1178
RsaI	GTAC	3 cut(s)	336, 900, 1219
RsaNI	GTAC	3 cut(s)	335, 899, 1218
SacI	GAGCTC	1 cut(s)	1665
SaqAI	TTAA	7 cut(s)	300, 738, 864, 1391, 1520, 1692, 1834
SatI	GCNGC	9 cut(s)	108, 172, 541, 707, 721, 1176, 1179, 1316, 1675
Sau3AI	GATC	2 cut(s)	17, 533
Sau96I	GGNCC	6 cut(s)	561, 745, 755, 1101, 1509, 1709
SchI	GAGTC	4 cut(s)	120, 994, 1065, 1739
ScrFI	CCNGG	6 cut(s)	417, 759, 1222, 1365, 1514, 1713
SduI	GDGCHC	1 cut(s)	1665
SfaNI	GCATC	3 cut(s)	632, 1440, 1561
SfcI	CTRYAG	1 cut(s)	645
Sfr274I	CTCGAG	1 cut(s)	186
SfuI	TTCGAA	1 cut(s)	1544
SgrAI	CRCCGGYG	1 cut(s)	58
SinI	GGWCC	5 cut(s)	561, 745, 755, 1509, 1709
SlaI	CTCGAG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
SpeI	ACTAGT	1 cut(s)	238
SsiI	CCGC	9 cut(s)	41, 105, 172, 183, 267, 430, 1183, 1316, 1378
SspI	AATATT	1 cut(s)	715
SspMI	CTAG	5 cut(s)	239, 795, 1035, 1335, 1614
SstI	GAGCTC	1 cut(s)	1665
StyD4I	CCNGG	6 cut(s)	415, 757, 1220, 1363, 1512, 1711
StyI	CCWWGG	1 cut(s)	1826
TaaI	ACNGT	4 cut(s)	395, 873, 1123, 1490
TaiI	ACGT	2 cut(s)	603, 1219
TaqI	TCGA	3 cut(s)	187, 527, 1544
TaqII	GACCGA	1 cut(s)	549
TatI	WGTACW	1 cut(s)	334
TauI	GCSGC	2 cut(s)	174, 1318
TfiI	GAWTC	6 cut(s)	520, 556, 791, 806, 917, 1760
Tru1I	TTAA	7 cut(s)	300, 738, 864, 1391, 1520, 1692, 1834
Tru9I	TTAA	7 cut(s)	300, 738, 864, 1391, 1520, 1692, 1834
TscAI	CASTG	4 cut(s)	400, 993, 1060, 1176
TseFI	GTSAC	6 cut(s)	100, 389, 395, 997, 1051, 1343
TseI	GCWGC	7 cut(s)	107, 540, 706, 720, 1175, 1178, 1674
Tsp45I	GTSAC	6 cut(s)	100, 389, 395, 997, 1051, 1343
TspDTI	ATGAA	9 cut(s)	17, 193, 492, 576, 772, 965, 1007, 1563, 1726
TspGWI	ACGGA	3 cut(s)	138, 167, 425
TspRI	CASTG	4 cut(s)	400, 993, 1060, 1176
Van91I	CCANNNNNTGG	2 cut(s)	422, 1370
VpaK11BI	GGWCC	5 cut(s)	561, 745, 755, 1509, 1709
VspI	ATTAAT	1 cut(s)	1520
XapI	RAATTY	3 cut(s)	569, 583, 1160
XbaI	TCTAGA	1 cut(s)	794
XceI	RCATGY	1 cut(s)	287
XhoI	CTCGAG	1 cut(s)	186
XmiI	GTMKAC	2 cut(s)	697, 1651
XmnI	GAANNNNTTC	3 cut(s)	779, 1273, 1733
XspI	CTAG	5 cut(s)	239, 795, 1035, 1335, 1614
Zsp2I	ATGCAT	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.